Validation Results for GenomicsReporting

Generated Tue Mar 10 20:45:57 UTC 2020, FHIR version 4.0.1 for hl7.fhir.uv.genomics-reporting#1.0.0 (canonical = http://hl7.org/fhir/uv/genomics-reporting (history))

IG Publisher Version: v1.0.70-SNAPSHOT

No Suppressed Errors

HL7 Publication check:

FilenameErrorsInformation messages & Warnings
Build Errors310
/scratch/ig-build-temp-2T8370/repo/src-generated/resources/genomics-reporting00
/scratch/ig-build-temp-2T8370/repo/src/examples/AnnotationExample24
/scratch/ig-build-temp-2T8370/repo/src/examples/CG-IG-HLA-FullBundle-0110
/scratch/ig-build-temp-2T8370/repo/src/examples/HLAB1502-pgx-example10
/scratch/ig-build-temp-2T8370/repo/src/examples/SNVexample13
/scratch/ig-build-temp-2T8370/repo/src/examples/complexVariant-nonHGVS01
/scratch/ig-build-temp-2T8370/repo/src/examples/compound-heterozygote11
/scratch/ig-build-temp-2T8370/repo/src/examples/diagnosticreport-cgexample10
/scratch/ig-build-temp-2T8370/repo/src/examples/diagnosticreport-hla-glstring-r405
/scratch/ig-build-temp-2T8370/repo/src/examples/diagnosticreport-pgxexample10
/scratch/ig-build-temp-2T8370/repo/src/examples/genotype-hla-a-glstring-r404
/scratch/ig-build-temp-2T8370/repo/src/examples/haplotype-hla-a-1-r403
/scratch/ig-build-temp-2T8370/repo/src/examples/obs-idh-ex09
/scratch/ig-build-temp-2T8370/repo/src/examples/oncology-diagnostic10
/scratch/ig-build-temp-2T8370/repo/src/examples/oncology-report-example10
/scratch/ig-build-temp-2T8370/repo/src/examples/oncologyexamples-r410
/scratch/ig-build-temp-2T8370/repo/src/examples/report-CYP2C1910
/scratch/ig-build-temp-2T8370/repo/src/examples/sequence-phase-relation-CYP2C1910
/scratch/ig-build-temp-2T8370/repo/src/examples/servicerequest-hla-a-r410
/scratch/ig-build-temp-2T8370/repo/src/examples/specimen-hla-r430
/scratch/ig-build-temp-2T8370/repo/src/resources/operationdefinition-find-subject-variants31
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/codesystem-seq-phase-relationship00
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/codesystem-tbd-codes00
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/conceptmap-dna-change-type00
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-dna-change-type10
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-functional-annotation10
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-hgnc10
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-hgvs10
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-seq-phase-relationship00
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-tbd-codes00
/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-variant-inheritance10
GenomicsReport01
Medication Statement01
Observations316
Service Request00
Specimen00
Task profiles02

n/a

conversion.html#/html/body/div/div/div/div/div/div/p/a at Line 177, column 148errorThe link 'http://hl7.org/fhir/stu3/genomics.html' for "here" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/p/a at Line 186, column 39errorThe link 'http://hl7.org/fhir/stu3/genomics.html#procedurerequest-genetics' for "STU3 ProcedureRequest-genetics" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/p/a at Line 200, column 39errorThe link 'http://hl7.org/fhir/stu3/genomics.html#diagnosticreport-genetics' for "STU3 DiagnosticReport-genetics" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/p/a at Line 217, column 10errorThe link 'http://hl7.org/fhir/stu3/genomics.html#observation-genetics' for "STU3 Observation-genetics" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 228, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsGene.html' for "Extension: Observation-geneticsGene" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 238, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsDNARegionName.html' for "Extension: Observation-geneticsDNARegionName" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 245, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsvariant.html' for "Extension: Observation-geneticsVariant.Name" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 251, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsvariant.html' for "Extension: Observation-geneticsVariant.Type" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 261, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsvariant.html' for "Extension: Observation-geneticsVariant.Id" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 271, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-geneticsGenomicSourceClass.html' for "Extension: Observation-geneticsGenomicSourceClass" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 277, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsAminoAcidChange.html' for "Extension: Observation-geneticsAminoAcidChange.Name" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 283, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsAminoAcidChange.html' for "Extension: Observation-geneticsAminoAcidChange.Type" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 289, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "MolecularSequence.referenceSeq.referenceSeqId" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 295, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "MolecularSequence.referenceSeq.referenceSeqId" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 301, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsAllele.html' for "Extension: Observation-geneticsAllele.Name" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 307, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsAllele.html' for "Extension: Observation-geneticsAllele.Frequency" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 313, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsPhaseSet.html' for "Extension: Observation-geneticsPhaseSet.Id" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 319, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsPhaseSet.html' for "Extension: Observation-geneticsPhaseSet.Sequence" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 329, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsAllele.html' for "Extension: Observation-geneticsAllele.State" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 335, column 17errorThe link 'http://hl7.org/fhir/stu3/extension-observation-geneticsCopyNumberEvent.html' for "Extension: Observation-geneticsCopyNumberEvent" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 341, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "Sequence.structureVariant.reportedaCGHRatio" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 347, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "Sequence.variant.referenceAllele" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 353, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "Sequence.variant.observedAllele" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 359, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "Sequence.coordinateSystem" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 365, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "Sequence.variant.start,end" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 371, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "Sequence.structureVariant.length" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 377, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "Sequence.structureVariant.outer" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/table/tbody/tr/td/a at Line 383, column 17errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "Sequence.structureVariant.inner" cannot be resolved
conversion.html#/html/body/div/div/div/div/div/div/p/a at Line 398, column 15errorThe link 'http://hl7.org/fhir/stu3/sequence.html' for "Sequence" cannot be resolved
find-subject-variants.html#/html/body/div/div/div/div/div/div/div/ul/li/a at Line 211, column 165errorThe link '#variant-normalization' for "'Variant normalization'" cannot be resolved (valid targets: 21 targets)
find-subject-variants.html#/html/body/div/div/div/div/div/div/div/ul/li/a at Line 211, column 487errorThe link '#variant-liftover' for "'Variant liftover'" cannot be resolved (valid targets: 21 targets)

/scratch/ig-build-temp-2T8370/repo/src-generated/resources/genomics-reporting.xml


/scratch/ig-build-temp-2T8370/repo/src/examples/AnnotationExample.json

PathSeverityMessage
DiagnosticReport/AnnotationExample: DiagnosticReport.contained[0].component[0].value.ofType(CodeableConcept).coding[0]errorUnable to provide support for code system http://snomed.info/sct version http://snomed.info/sct/900000000000207008900000000000207008 for "http://snomed.info/sct#398036000"
DiagnosticReport/AnnotationExample: DiagnosticReport.contained[0].derivedFrom[0]Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/inherited-disease-pathogenicity Show Reasoning
DiagnosticReport/AnnotationExample: DiagnosticReport.contained[1].component[1].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.ncbi.nlm.nih.gov/clinvar" is unknown so the code cannot be validated
DiagnosticReport/AnnotationExample: DiagnosticReport.contained[1].component[2].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.ncbi.nlm.nih.gov/nuccore" is unknown so the code cannot be validated
DiagnosticReport/AnnotationExample: DiagnosticReport.result[0]errorUnable to find matching profile for #1 among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/inherited-disease-pathogenicity
DiagnosticReport/AnnotationExample: DiagnosticReport.result[0]Slicing InformationDetails for #1 matching against Profilehttp://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/inherited-disease-pathogenicity Show Reasoning

/scratch/ig-build-temp-2T8370/repo/src/examples/CG-IG-HLA-FullBundle-01.xml

PathSeverityMessage
Bundle/CG-IG-HLA-FullBundle-01: BundleerrorSpecified profile type was "DiagnosticReport", but found type "Bundle"

/scratch/ig-build-temp-2T8370/repo/src/examples/HLAB1502-pgx-example.xml

PathSeverityMessage
Bundle/HLAB1502-pgx-example: BundleerrorSpecified profile type was "Observation", but found type "Bundle"

/scratch/ig-build-temp-2T8370/repo/src/examples/SNVexample.xml

PathSeverityMessage
Observation/SNVexample: Observation.component[0].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.genenames.org/geneId" is unknown so the code cannot be validated
Observation/SNVexample: Observation.component[4].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.(Ala412Val))
Observation/SNVexample: Observation.component[4].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://varnomen.hgvs.org" is unknown so the code cannot be validated
Observation/SNVexample: Observation.component[6].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.ncbi.nlm.nih.gov/refseq" is unknown so the code cannot be validated

/scratch/ig-build-temp-2T8370/repo/src/examples/complexVariant-nonHGVS.xml

PathSeverityMessage
Bundle/complexVariant-nonHGVS: Bundle.entry[0].resource.component[0].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.ncbi.nlm.nih.gov/refseq" is unknown so the code cannot be validated

/scratch/ig-build-temp-2T8370/repo/src/examples/compound-heterozygote.xml

PathSeverityMessage
Bundle/compound-heterozygote: Bundle.entry[0].resource.component[0].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#NM_022787.3:c.769G>A)
Bundle/compound-heterozygote: Bundle.entry[0].resource.component[0].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://varnomen.hgvs.org" is unknown so the code cannot be validated

/scratch/ig-build-temp-2T8370/repo/src/examples/diagnosticreport-cgexample.xml

PathSeverityMessage
Bundle/diagnosticreport-cgexample: BundleerrorSpecified profile type was "Observation", but found type "Bundle"

/scratch/ig-build-temp-2T8370/repo/src/examples/diagnosticreport-hla-glstring-r4.xml

PathSeverityMessage
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.result[0]Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report Show Reasoning
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.result[1]Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report Show Reasoning
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.result[2]Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report Show Reasoning
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.code.coding[1]informationCode System URI "http://genenames.org/geneId" is unknown so the code cannot be validated
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.code.coding[1]Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report Show Reasoning

/scratch/ig-build-temp-2T8370/repo/src/examples/diagnosticreport-pgxexample.xml

PathSeverityMessage
Bundle/diagnosticreport-pgxexample: BundleerrorSpecified profile type was "Observation", but found type "Bundle"

/scratch/ig-build-temp-2T8370/repo/src/examples/genotype-hla-a-glstring-r4.xml

PathSeverityMessage
Observation/genotype-hla-a-glstring-r4: Observation.derivedFrom[0]Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype Show Reasoning
Observation/genotype-hla-a-glstring-r4: Observation.derivedFrom[1]Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype Show Reasoning
Observation/genotype-hla-a-glstring-r4: Observation.value.ofType(CodeableConcept).coding[0]informationCode System URI "http://glstring.org" is unknown so the code cannot be validated
Observation/genotype-hla-a-glstring-r4: Observation.component[0].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.genenames.org/geneId" is unknown so the code cannot be validated

/scratch/ig-build-temp-2T8370/repo/src/examples/haplotype-hla-a-1-r4.xml

PathSeverityMessage
Observation/haplotype-hla-a-1-r4: Observation.derivedFrom[0]Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype Show Reasoning
Observation/haplotype-hla-a-1-r4: Observation.value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.ebi.ac.uk/ipd/imgt/hla" is unknown so the code cannot be validated
Observation/haplotype-hla-a-1-r4: Observation.component[0].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.genenames.org/geneId" is unknown so the code cannot be validated

/scratch/ig-build-temp-2T8370/repo/src/examples/obs-idh-ex.xml

PathSeverityMessage
Observation/obs-idh-ex: Observation.component[2]Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/inherited-disease-pathogenicity Show Reasoning
Observation/obs-idh-ex: Observation.component[0].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.ncbi.nlm.nih.gov/medgen" is unknown so the code cannot be validated
Observation/obs-idh-ex: Observation.component[0].value.ofType(CodeableConcept).coding[1]informationCode System URI "http://www.orpha.net" is unknown so the code cannot be validated
Observation/obs-idh-ex: Observation.component[0].value.ofType(CodeableConcept).coding[2]informationCode System URI "http://www.omim.org" is unknown so the code cannot be validated
Observation/obs-idh-ex: Observation.component[1].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://www.ncbi.nlm.nih.gov/medgen" is unknown so the code cannot be validated
Observation/obs-idh-ex: Observation.component[1].value.ofType(CodeableConcept).coding[1]informationCode System URI "http://www.orpha.net" is unknown so the code cannot be validated
Observation/obs-idh-ex: Observation.component[1].value.ofType(CodeableConcept).coding[2]informationCode System URI "http://www.omim.org" is unknown so the code cannot be validated
Observation/obs-idh-ex: Observation.component[1].value.ofType(CodeableConcept).coding[3]informationCode System URI "http://www.omim.org" is unknown so the code cannot be validated
Observation/obs-idh-ex: Observation.component[2].value.ofType(CodeableConcept).coding[0]informationCode System URI "http://ghr.nlm.nih.gov/primer/inheritance/inheritancepatterns" is unknown so the code cannot be validated

/scratch/ig-build-temp-2T8370/repo/src/examples/oncology-diagnostic.xml

PathSeverityMessage
Bundle/oncology-diagnostic: BundleerrorSpecified profile type was "Observation", but found type "Bundle"

/scratch/ig-build-temp-2T8370/repo/src/examples/oncology-report-example.json

PathSeverityMessage
Bundle/oncology-report-example: BundleerrorSpecified profile type was "DiagnosticReport", but found type "Bundle"

/scratch/ig-build-temp-2T8370/repo/src/examples/oncologyexamples-r4.xml

PathSeverityMessage
Bundle/oncologyexamples-r4: BundleerrorSpecified profile type was "Observation", but found type "Bundle"

/scratch/ig-build-temp-2T8370/repo/src/examples/report-CYP2C19.xml

PathSeverityMessage
DiagnosticReport/report-CYP2C19: DiagnosticReporterrorSpecified profile type was "Observation", but found type "DiagnosticReport"

/scratch/ig-build-temp-2T8370/repo/src/examples/sequence-phase-relation-CYP2C19.xml

PathSeverityMessage
DiagnosticReport/sequence-phase-relation-CYP2C19: DiagnosticReporterrorSpecified profile type was "Observation", but found type "DiagnosticReport"

/scratch/ig-build-temp-2T8370/repo/src/examples/servicerequest-hla-a-r4.xml

PathSeverityMessage
ServiceRequest/servicerequest-hla-a-r4: ServiceRequest.category[0].coding[0]errorUnable to provide support for code system http://snomed.info/sct version http://snomed.info/sct/900000000000207008900000000000207008 for "http://snomed.info/sct#108252007"

/scratch/ig-build-temp-2T8370/repo/src/examples/specimen-hla-r4.xml

PathSeverityMessage
Specimen/specimen-hla-r4: Specimen.type.coding[0]errorUnable to provide support for code system http://snomed.info/sct version http://snomed.info/sct/900000000000207008900000000000207008 for "http://snomed.info/sct#258564008"
Specimen/specimen-hla-r4: Specimen.collection.method.coding[0]errorUnable to provide support for code system http://snomed.info/sct version http://snomed.info/sct/900000000000207008900000000000207008 for "http://snomed.info/sct#418622002"
Specimen/specimen-hla-r4: Specimen.collection.bodySite.coding[0]errorUnable to provide support for code system http://snomed.info/sct version http://snomed.info/sct/900000000000207008900000000000207008 for "http://snomed.info/sct#261063000"

/scratch/ig-build-temp-2T8370/repo/src/resources/operationdefinition-find-subject-variants.xml

PathSeverityMessage
OperationDefinition/find-subject-variants: OperationDefinitionwarningopd-0: Name should be usable as an identifier for the module by machine processing applications such as code generation [name.matches('[A-Z]([A-Za-z0-9_]){0,254}')]
OperationDefinition/find-subject-variants: OperationDefinition.parameter[3]erroropd-3: A targetProfile can only be specified for parameters of type Reference or Canonical [targetProfile.exists() implies ((type = 'Reference') or (type = 'canonical'))]
OperationDefinition/find-subject-variants: OperationDefinition.parameter[4]erroropd-3: A targetProfile can only be specified for parameters of type Reference or Canonical [targetProfile.exists() implies ((type = 'Reference') or (type = 'canonical'))]
OperationDefinition/find-subject-variants: OperationDefinition.parameter[5]erroropd-3: A targetProfile can only be specified for parameters of type Reference or Canonical [targetProfile.exists() implies ((type = 'Reference') or (type = 'canonical'))]

/scratch/ig-build-temp-2T8370/repo/src/vocabulary/codesystem-seq-phase-relationship.xml


/scratch/ig-build-temp-2T8370/repo/src/vocabulary/codesystem-tbd-codes.xml


/scratch/ig-build-temp-2T8370/repo/src/vocabulary/conceptmap-dna-change-type.xml


/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-dna-change-type.xml

PathSeverityMessage
dna-change-typeerrorError from server: Unable to provide support for code system http://sequenceontology.org (see Tx log)

/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-functional-annotation.xml

PathSeverityMessage
functional-annotationerrorError from server: Unable to provide support for code system http://sequenceontology.org (see Tx log)

/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-hgnc.xml

PathSeverityMessage
hgncerrorError from server: Unable to provide support for code system http://www.genenames.org/geneId (see Tx log)

/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-hgvs.xml

PathSeverityMessage
hgvserrorError from server: Unable to provide support for code system http://varnomen.hgvs.org (see Tx log)

/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-seq-phase-relationship.xml


/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-tbd-codes.xml


/scratch/ig-build-temp-2T8370/repo/src/vocabulary/valueset-variant-inheritance.xml

PathSeverityMessage
variant-inheritanceerrorError from server: Unable to provide support for code system http://sequenceontology.org (see Tx log)

/scratch/ig-build-temp-2T8370/repo/src/resources/diagnosticreport-profile-spreadsheet.xml

PathSeverityMessage
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/SupportingInfowarningThe Implementation Guide contains no examples for this extension

/scratch/ig-build-temp-2T8370/repo/src/resources/medicationstatement-profile-spreadsheet.xml

PathSeverityMessage
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medicationstatementwarningThe Implementation Guide contains no examples for this profile

/scratch/ig-build-temp-2T8370/repo/src/resources/observation-profile-spreadsheet.xml

PathSeverityMessage
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotypeerrorThe element Observation.derivedFrom is out of order (and maybe others after it)
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/sequence-phase-relationshiperrorThe element Observation.derivedFrom is out of order (and maybe others after it)
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/implicationerrorThe element Observation.derivedFrom is out of order (and maybe others after it)
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-basewarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/grouperwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/overall-interpretationwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/findingwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/sequence-phase-relationshipwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/implicationwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-implicationwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-metabolismwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-transporterwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-efficacywarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-high-riskwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/somatic-implicationwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/somatic-diagnosticwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/somatic-prognosticwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/somatic-predictivewarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/region-studiedwarningThe Implementation Guide contains no examples for this profile

/scratch/ig-build-temp-2T8370/repo/src/resources/servicerequest-profile-spreadsheet.xml


/scratch/ig-build-temp-2T8370/repo/src/resources/specimen-profile-spreadsheet.xml


/scratch/ig-build-temp-2T8370/repo/src/resources/task-profile-spreadsheet.xml

PathSeverityMessage
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/task-med-chgwarningThe Implementation Guide contains no examples for this profile
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/task-rec-followupwarningThe Implementation Guide contains no examples for this profile