Genomics Reporting Implementation Guide
3.0.0 - STU3 International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

Example Observation: MSH2-del-var

Generated Narrative: Observation MSH2-del-var

status: Final

category: Laboratory, Genetics

code: Genetic variant assessment

subject: Substance Junior Hamsburg (official) Male, DoB: 1987-09-01 ( Medical record number: 1234567 (use: temp, period: 2021-01-01 --> (ongoing)))

effective: 2023-02-01

performer: Practitioner Test Dolin

value: Present

method: Sequencing

component

code: Transcript reference sequence [ID]

value: NM_006885.4

component

code: DNA change type

value: deletion

component

code: Gene studied [ID]

value: MSH2

component

code: Discrete genetic variant

value: NM_000251.3(MSH2):c.1832del (p.Val611fs)

component

code: Genomic source class [Type]

value: Somatic