Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes-vs | Version: 3.0.0 | |||
Active as of 2024-11-19 | Computable Name: TBDCodesVS |
Value Set for codes yet to be defined in LOINC
References
This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)
Generated Narrative: ValueSet tbd-codes-vs
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs
Generated Narrative: ValueSet
Expansion based on codesystem To Be Determined Codes v3.0.0 (CodeSystem)
This value set contains 13 concepts
Code | System | Display | Definition |
associated-therapy | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Associated Therapy | The non-medication therapy (procedure) associated with this implication. |
molecular-consequence | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Molecular Consequence | The calculated or observed effect of a DNA variant on its downstream transcript and, if applicable, ensuing protein sequence. |
feature-consequence | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Feature Consequence | The structural implications of a variant (e.g. the variant disrupts a regulatory region, the variant is an inframe insertion). |
diagnostic-implication | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Diagnostic Implication | An observation linking a genomic finding with a knowledge base, providing context that may aid in diagnosing a patient with a particular phenotype or condition. |
therapeutic-implication | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Therapeutic Implication | An observation linking a genomic finding with a knowledge base, providing potential evidence of an interaction with a specified medication or non-medicinal therapy. Ramifications may include alterations in drug metabolism (or pharmacokinetics) that determine the concentration of the drug, prodrug, and/or break-down products over time; alterations in drug efficacy (or pharmacodynamics) that determine how effective a drug is at a given concentration; alterations that alter the risk of adverse drug events, or other types of implications that indicate altered responsiveness to other types of therapies. |
functional-effect | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Functional Effect | The effect of a variant on downstream biological products or pathways (from Sequence Ontology). |
conclusion-string | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Conclusion Text | Clinical conclusion (interpretation) of the observation. |
condition-inheritance | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Condition Inheritance | The transmission pattern of the condition/phenotype in a pedigree. |
variant-confidence-status | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Variant Confidence Status | The confidence of a true positive variant call. |
repeat-motif | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Repeat Expansion Motif | Nucleotides of a repeat expansion motif. |
repeat-number | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | Number of Repeat Expansions | Number of repeats of a repeat expansion. |
biomarker-category | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | A characterization of a given biomarker observation. | |
protein-ref-seq | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | An identifier for the protein reference sequence. |
Explanation of the columns that may appear on this page:
Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
Code | The code (used as the code in the resource instance) |
Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
Definition | An explanation of the meaning of the concept |
Comments | Additional notes about how to use the code |