Genomics Reporting Implementation Guide
3.0.0 - release International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

ValueSet: Variant Confidence Status

Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/variant-confidence-status-vs Version: 3.0.0
Active as of 2024-11-19 Computable Name: VariantConfidenceStatusVS

A code that classifies the confidence for calling this variant.

References

Logical Definition (CLD)

Generated Narrative: ValueSet variant-confidence-status-vs

 

Expansion

Generated Narrative: ValueSet

Expansion based on codesystem Variant Confidence Status Codes v3.0.0 (CodeSystem)

This value set contains 3 concepts

CodeSystemDisplayDefinition
  highhttp://terminology.hl7.org/CodeSystem/variant-confidence-status-csHigh

High confidence true positive variant call. Suitable for clinical reporting.

  intermediatehttp://terminology.hl7.org/CodeSystem/variant-confidence-status-csIntermediate

Candidate true positive variant call. Unable to confirm without additional testing.

  lowhttp://terminology.hl7.org/CodeSystem/variant-confidence-status-csLow

High confidence false positive variant call.

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code