Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/variant-confidence-status-vs | Version: 3.0.1-SNAPSHOT | |||
Active as of 2024-10-08 | Computable Name: VariantConfidenceStatusVS |
A code that classifies the confidence for calling this variant.
References
Generated Narrative: ValueSet variant-confidence-status-vs
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs
Generated Narrative: ValueSet
Expansion based on codesystem Variant Confidence Status Codes v3.0.1-SNAPSHOT (CodeSystem)
This value set contains 3 concepts
Code | System | Display | Definition |
high | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs | High | High confidence true positive variant call. Suitable for clinical reporting. |
intermediate | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs | Intermediate | Candidate true positive variant call. Unable to confirm without additional testing. |
low | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs | Low | High confidence false positive variant call. |
Explanation of the columns that may appear on this page:
Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
Code | The code (used as the code in the resource instance) |
Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
Definition | An explanation of the meaning of the concept |
Comments | Additional notes about how to use the code |