Genomics Reporting Implementation Guide
3.0.0 - STU3 International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

Example Observation: EGFR-L858R-var

Generated Narrative: Observation EGFR-L858R-var

status: Final

category: Laboratory, Genetics

code: Genetic variant assessment

subject: Substance Junior Hamsburg (official) Male, DoB: 1987-09-01 ( Medical record number: 1234567 (use: temp, period: 2021-01-01 --> (ongoing)))

effective: 2023-02-01

performer: Practitioner Test Dolin

value: Present

method: Sequencing

component

code: Discrete genetic variant

value: EGFR L858R

component

code: Amino acid change (pHGVS)

value: NP_005219.2:p.Leu858Arg

component

code: DNA change type

value: SNV

component

code: DNA change (c.HGVS)

value: NM_005228.4:c.2573T>G

component

code: Gene studied [ID]

value: EGFR

component

code: Genomic DNA change (gHGVS)

value: NC_000007.13:g.55259515T>G

component

code: Genomic source class [Type]

value: Somatic

component

code: Sample variant allelic frequency [NFr]

value: 0.066 decimal