Genomics Reporting Implementation Guide
4.0.0-ballot - STU 4 ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

CodeSystem: Genomic Study Data Format CodeSystem (Experimental)

Official URL: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs Version: 4.0.0-ballot
Standards status: Informative Computable Name: GenomicStudyDataFormatCS

Backport of http://hl7.org/fhir/genomicstudy-dataformat

This Code system is referenced in the content logical definition of the following value sets:

This case-sensitive code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs defines the following codes:

CodeDisplayDefinition
bam BAM BAM
bed BED BED
bedpe BEDPE BEDPE
bedgraph BedGraph BedGraph
bigbed bigBed bigBed
bigWig bigWig bigWig
birdsuite-files Birdsuite-Files Birdsuite-Files
broadpeak broadPeak broadPeak
cbs CBS CBS
chemical-reactivity-probing-profiles Chemical-Reactivity-Probing-Profiles Chemical-Reactivity-Probing-Profiles
chrom-sizes chrom-sizes chrom-sizes
cn CN CN
custom-file-formats Custom-File-Formats Custom-File-Formats
cytoband Cytoband Cytoband
fasta FASTA FASTA
gct GCT GCT
cram CRAM CRAM
genepred genePred genePred
gff-gtf GFF/GTF GFF/GTF
gistic GISTIC GISTIC
goby Goby Goby
gwas GWAS GWAS
igv IGV IGV
loh LOH LOH
maf-multiple-alignment-format MAF-Multiple Alignment Format MAF-Multiple Alignment Format
maf-mutation-annotation-format MAF-Mutation-Annotation-Format MAF-Mutation-Annotation-Format
merged-bam-file Merged BAM File Merged BAM File
mut MUT MUT
narrowpeak narrowPeak narrowPeak
psl PSL PSL
res RES RES
rna-secondary-structure-formats RNA-Secondary-Structure-Formats RNA-Secondary-Structure-Formats
sam SAM SAM
sample-info-attributes-file Sample-Info-Attributes-file Sample-Info-Attributes-file
seg SEG SEG
tdf TDF TDF
track-line Track Line Track Line
type-line Type Line Type Line
vcf VCF VCF
wig WIG WIG