Genomics Reporting Implementation Guide
3.0.0 - release
Genomics Reporting Implementation Guide
3.0.0 - release
Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-code-vs | Version: 3.0.0 | |||
| Active as of 2024-11-19 | Computable Name: MolecularBiomarkerCodeVS | |||
Copyright/Legal: This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc. This value set includes content from SNOMED CT, which is copyright © 2002+ International Health Terminology Standards Development Organisation (IHTSDO), and distributed by agreement between IHTSDO and HL7. Implementer use of SNOMED CT is not covered by this agreement. |
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Value Set for terms that can be used as Biomarkers.
References
Generated Narrative: ValueSet molecular-biomarker-code-vs
This value set includes codes based on the following rules:
http://loinc.org| Code | Display |
| 85337-4 | Estrogen receptor Ag Immune stain Ql (Breast cancer specimen) |
| 72382-5 | HER2 IA Qn (Tiss) |
| 77637-7 | HLA-A and B and C (class I) IgG panel IA [Identifier] |
| 40557-1 | Progesterone receptor Ag Immune stain Ql (Tiss) |
| 85147-7 | PD-L1 by clone 22C3 Immune stain Doc (Tiss) |
| 59025-7 | Neutrophil Ab FC Qn (S) |
| 59003-4 | Lactoferrin Ab IA Qn (S) |
| 10495-0 | Insulin Ag Immune stain Ql (Tiss) |
| 16550-6 | Carbohydrates Nom (U) |
| 2569-2 | Lipids (S) [Mass/Vol] |
| 4551-8 | Hemoglobin A2 (Bld) [Mass fraction] |
| 19195-7 | Prostate specific Ag Qn |
| 64083-9 | MGMT gene methylation score Molgen (Tiss) [Ratio] |
| 62862-8 | Microsatellite instability Immune stain Ql (Tiss) |
| 81704-9 | Microsatellite instability marker D17S250 Ql (Cancer specimen) |
| 94077-5 | Tumor mutation burden Ql (Tumor) [Interp] |
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl
| Code | Display |
| C120465 | Homologous Recombination Repair Deficiency |
Generated Narrative: ValueSet
Expansion based on Loinc v2.78
This value set contains 16 concepts
| Code | System | Display |
| 85337-4 | http://loinc.org | Estrogen receptor Ag [Presence] in Breast cancer specimen by Immune stain |
| 72382-5 | http://loinc.org | HER2 [Units/volume] in Tissue by Immunoassay |
| 77637-7 | http://loinc.org | HLA-A and B and C (class I) IgG panel [Identifier] - Serum or Plasma by Immunoassay |
| 40557-1 | http://loinc.org | Progesterone receptor Ag [Presence] in Tissue by Immune stain |
| 85147-7 | http://loinc.org | PD-L1 by clone 22C3 in Tissue by Immune stain Report |
| 59025-7 | http://loinc.org | Neutrophil Ab [Units/volume] in Serum by Flow cytometry (FC) |
| 59003-4 | http://loinc.org | Lactoferrin Ab [Units/volume] in Serum by Immunoassay |
| 10495-0 | http://loinc.org | Insulin Ag [Presence] in Tissue by Immune stain |
| 16550-6 | http://loinc.org | Carbohydrates [Identifier] in Urine |
| 2569-2 | http://loinc.org | Lipids [Mass/volume] in Serum |
| 4551-8 | http://loinc.org | Hemoglobin A2/Hemoglobin.total in Blood |
| 19195-7 | http://loinc.org | Prostate specific Ag [Units/volume] in Serum or Plasma |
| 64083-9 | http://loinc.org | MGMT gene methylation score in Tissue by Molecular genetics method |
| 62862-8 | http://loinc.org | Microsatellite instability [Presence] in Tissue by Immune stain |
| 81704-9 | http://loinc.org | Microsatellite instability marker D17S250 in Cancer specimen Qualitative |
| 94077-5 | http://loinc.org | Tumor mutation burden [Interpretation] |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |
IG © 2022+ HL7 International / Clinical Genomics. Package hl7.fhir.uv.genomics-reporting#3.0.0 based on FHIR 4.0.1. Generated 2024-11-19
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