Genomics Reporting Implementation Guide
3.0.0 - release International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

Example Observation: ExampleSomaticDEL

Generated Narrative: Observation ExampleSomaticDEL

status: Final

category: Laboratory, Genetics

code: Genetic variant assessment

subject: Adam B. Everyman Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))

effective: 2019-04-01

performer: Organization some lab

value: Present

method: Sequencing

component

code: DNA change type

value: deletion

component

code: Genomic ref allele [ID]

value: C

component

code: Genomic source class [Type]

value: Somatic

component

code: Genomic reference sequence [ID]

value: NC_000001.10

component

code: Genomic structural variant copy number

value: 1 1 (Details: UCUM code1 = '1')

component

code: Genomic coordinate system [Type]

value: 1-based character counting

component

code: Structural variant inner start and end

value: 16360078-16383337