Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-data-format-vs | Version: 3.0.0 | |||
Active as of 2024-11-24 | Computable Name: GenomicStudyDataFormatVS |
Backport of http://hl7.org/fhir/ValueSet/genomicstudy-dataformat
References
Generated Narrative: ValueSet genomic-study-data-format-vs
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs
Generated Narrative: ValueSet
Expansion based on codesystem Genomic Study Data Format CodeSystem v3.0.0 (CodeSystem)
This value set contains 40 concepts
Code | System | Display |
bam | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BAM |
bed | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BED |
bedpe | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BEDPE |
bedgraph | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BedGraph |
bigbed | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | bigBed |
bigWig | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | bigWig |
birdsuite-files | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Birdsuite-Files |
broadpeak | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | broadPeak |
cbs | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | CBS |
chemical-reactivity-probing-profiles | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Chemical-Reactivity-Probing-Profiles |
chrom-sizes | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | chrom-sizes |
cn | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | CN |
custom-file-formats | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Custom-File-Formats |
cytoband | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Cytoband |
fasta | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | FASTA |
gct | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GCT |
cram | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | CRAM |
genepred | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | genePred |
gff-gtf | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GFF/GTF |
gistic | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GISTIC |
goby | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Goby |
gwas | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GWAS |
igv | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | IGV |
loh | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | LOH |
maf-multiple-alignment-format | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | MAF-Multiple Alignment Format |
maf-mutation-annotation-format | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | MAF-Mutation-Annotation-Format |
merged-bam-file | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Merged BAM File |
mut | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | MUT |
narrowpeak | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | narrowPeak |
psl | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | PSL |
res | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | RES |
rna-secondary-structure-formats | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | RNA-Secondary-Structure-Formats |
sam | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | SAM |
sample-info-attributes-file | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Sample-Info-Attributes-file |
seg | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | SEG |
tdf | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | TDF |
track-line | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Track Line |
type-line | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Type Line |
vcf | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | VCF |
wig | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | WIG |
Explanation of the columns that may appear on this page:
Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
Code | The code (used as the code in the resource instance) |
Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
Definition | An explanation of the meaning of the concept |
Comments | Additional notes about how to use the code |