Genomics Reporting Implementation Guide
3.0.0 - release
Genomics Reporting Implementation Guide
3.0.0 - release
Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
Generated Narrative: Bundle bundle-sequence-phase-relation-CYP2C19
Bundle bundle-sequence-phase-relation-CYP2C19 of type transaction
Entry 1 - fullUrl = urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfe60
Resource Observation:
Generated Narrative: Observation dv-5c7e9e1ca8252
status: Final
category: Laboratory, Genetics
code: Genetic variant assessment
subject: Bundle: type = transaction
effective: 2019-03-05
issued: 2019-03-05 16:04:44+0000
performer: Bundle: type = transaction
value: Present
component
code: Human reference sequence assembly version
value: GRCh37
component
code: Genomic reference sequence ID
value: NC_000010.10
component
code: Allelic state
value: heterozygous
component
code: Ref nucleotide
value: C
component
code: Alt allele
value: A
component
code: Genomic coord system
value: 1-based character counting
component
code: Genomic allele start-end
value: 96527334-?
Request:
POST Observation
Entry 2 - fullUrl = urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe01
Resource Observation:
Generated Narrative: Observation dv-5c7e9e1ca82e4
status: Final
category: Laboratory, Genetics
code: Genetic variant assessment
subject: Bundle: type = transaction
effective: 2019-03-05
issued: 2019-03-05 16:04:44+0000
performer: Bundle: type = transaction
value: Present
component
code: Human reference sequence assembly version
value: GRCh37
component
code: Genomic reference sequence ID
value: NC_000010.10
component
code: Allelic state
value: heterozygous
component
code: Ref nucleotide
value: C
component
code: Alt allele
value: G
component
code: Genomic coord system
value: 1-based character counting
component
code: Genomic allele start-end
value: 96527722-?
Request:
POST Observation
Entry 3 - fullUrl = urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe02
Resource Observation:
Generated Narrative: Observation sid-5c7e9e1ca8a29
status: Final
category: Laboratory, Genetics
code: Allelic phase
subject: Bundle: type = transaction
effective: 2019-03-05
issued: 2019-03-05 16:04:44+0000
performer: Bundle: type = transaction
value: Cis
derivedFrom:
Request:
POST Observation
Entry 4 - fullUrl = urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe03
Resource DiagnosticReport:
Generated Narrative: DiagnosticReport sequence-phase-relation-CYP2C19
Genetic analysis report (Genetics)
Report Details
Code Value
Request:
POST DiagnosticReport
Entry 5 - fullUrl = urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab
Resource Organization:
Generated Narrative: Organization performingLab
name: aTypingLab Inc
alias: aTL
Contacts
Telecom Address ph: 1-800-555-1234(Work) 123 Main St, Sometown, ND 99999(work)
Request:
POST Organization
Entry 6 - fullUrl = urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac
Resource Patient:
Generated Narrative: Patient patient
John Storm(official) Male, DoB: 1986-12-31
Request:
POST Patient
IG © 2022+ HL7 International / Clinical Genomics. Package hl7.fhir.uv.genomics-reporting#3.0.0 based on FHIR 4.0.1. Generated 2024-11-19
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