Validation Results for GenomicsReporting

Generated Wed May 15 14:14:07 UTC 2024, FHIR version 4.0.1 for hl7.fhir.uv.genomics-reporting#3.0.1-SNAPSHOT (canonical = http://hl7.org/fhir/uv/genomics-reporting (history)). See Errors Only

Quality Checks
Publisher Version:IG Publisher Version: v1.6.7
Publication Code:genomics-reporting . PackageId = hl7.fhir.uv.genomics-reporting, Canonical = http://hl7.org/fhir/uv/genomics-reporting
Realm Check for UV:
  • n/a
Publication Request:No publication request found
Supressed Messages:52 Suppressed Issues
Dependency Checks:
PackageVersionFHIRCanonicalWeb BaseComment
.. hl7.fhir.uv.genomics-reporting3.0.1-SNAPSHOTR4http://hl7.org/fhir/uv/genomics-reporting
... hl7.terminology.r45.5.0 MR4http://terminology.hl7.orghttp://terminology.hl7.org/5.5.0
... hl7.fhir.uv.extensions.r45.1.0 MR4http://hl7.org/fhir/extensionshttp://hl7.org/fhir/extensions/5.1.0
Templates: hl7.fhir.template#0.10.0 -> hl7.base.template#0.10.0 -> fhir.base.template#0.8.0. Tools: 0.1.0
Dependent IGs:1 guide
Global Profiles:(none declared)
Terminology Server(s):http://tx.fhir.org/r4 (details)
HTA Analysis:All OK
R5 Dependencies:(none)
Draft Dependencies:
Modifier Extensions:(none)
Previous Version Comparison: Comparison with version 3.0.0-ballot
IPA Comparison: n/a
IPS Comparison: n/a
Summary: errors = 5, warn = 20, info = 49, broken links = 10
FilenameErrorsWarningsHints
Build Errors1010
/scratch/repo/fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01000
/scratch/repo/fsh-generated/resources/Bundle-bundle-CYP2C19000
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample002
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample-withGrouping001
/scratch/repo/fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS000
/scratch/repo/fsh-generated/resources/Bundle-bundle-compound-heterozygote000
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-diagnostic000
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-report-example000
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4001
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping001
/scratch/repo/fsh-generated/resources/Bundle-bundle-pgxexample000
/scratch/repo/fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19000
/scratch/repo/fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-coded-annotation-types-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-change-type-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-data-format-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-method-type-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-status-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-genomic-study-type-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-tbd-codes-cs001
/scratch/repo/fsh-generated/resources/CodeSystem-variant-confidence-status-cs001
/scratch/repo/fsh-generated/resources/ConceptMap-GenomicStudyStatusMap000
/scratch/repo/fsh-generated/resources/ConceptMap-dna-change-type-map001
/scratch/repo/fsh-generated/resources/Device-triodenovo-software000
/scratch/repo/fsh-generated/resources/DiagnosticReport-GenomicReportExample01000
/scratch/repo/fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE000
/scratch/repo/fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE-withGrouping001
/scratch/repo/fsh-generated/resources/DiagnosticReport-diagnosticreport-hla-glstring-r4000
/scratch/repo/fsh-generated/resources/DiagnosticReport-somaticReport000
/scratch/repo/fsh-generated/resources/DocumentReference-CNVAnalysis-called000
/scratch/repo/fsh-generated/resources/DocumentReference-FullGenome-GRCh38000
/scratch/repo/fsh-generated/resources/DocumentReference-SimpleVariantAnalysis-called000
/scratch/repo/fsh-generated/resources/DocumentReference-UncallableRegions000
/scratch/repo/fsh-generated/resources/DocumentReference-WES-FullSequencedRegion-GRCh38000
/scratch/repo/fsh-generated/resources/DocumentReference-WES-UncallableRegions-GRCh38000
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileFatherBAM000
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileMotherBAM000
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileProbandBAM000
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileProbandVCF000
/scratch/repo/fsh-generated/resources/DocumentReference-genomicVCFfile-cnv000
/scratch/repo/fsh-generated/resources/DocumentReference-genomicVCFfile-simple000
/scratch/repo/fsh-generated/resources/DocumentReference-somaticVCFfile000
/scratch/repo/fsh-generated/resources/ImplementationGuide-genomics-reporting000
/scratch/repo/fsh-generated/resources/MedicationStatement-MedicationStatementWarfarin000
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-molc000
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-significance000
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-var000
/scratch/repo/fsh-generated/resources/Observation-AnnotationExample000
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-molc000
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-significance000
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-therapuDrug1000
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-therapuDrug2000
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-var000
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineCNV000
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineDEL000
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineINV000
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticCNV000
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticDEL000
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticINV000
/scratch/repo/fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes000
/scratch/repo/fsh-generated/resources/Observation-GenotypeExample1000
/scratch/repo/fsh-generated/resources/Observation-GenotypeExamplePharmVar000
/scratch/repo/fsh-generated/resources/Observation-GrouperEx01000
/scratch/repo/fsh-generated/resources/Observation-GrouperEx02000
/scratch/repo/fsh-generated/resources/Observation-GrouperEx03000
/scratch/repo/fsh-generated/resources/Observation-HER2byImmuneStainExample000
/scratch/repo/fsh-generated/resources/Observation-HER2byImmunoassayExample000
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype1000
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype2000
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype1000
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype2000
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype1000
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype2000
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar01000
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar02000
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2000
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2000
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLExample000
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLImplication000
/scratch/repo/fsh-generated/resources/Observation-ISCN-NormalExample000
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-disease000
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-molc000
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-var000
/scratch/repo/fsh-generated/resources/Observation-MSIExample000
/scratch/repo/fsh-generated/resources/Observation-MicrosatelliteInstabilityExample01000
/scratch/repo/fsh-generated/resources/Observation-MultipleRepeatExpansions000
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-significance000
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-molc000
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-var000
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-disease000
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-molc000
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-var000
/scratch/repo/fsh-generated/resources/Observation-PDL1Example000
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1001000
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1002000
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1003000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1011000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1012000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1013000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1014000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1015000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1016000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1017000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1018000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1019000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1020000
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1021000
/scratch/repo/fsh-generated/resources/Observation-PolyGenicDiagnosticImpExample000
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion000
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-disease000
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuDrug000
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial000
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-var000
/scratch/repo/fsh-generated/resources/Observation-RepeatExpansion000
/scratch/repo/fsh-generated/resources/Observation-SNVexample000
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-molc000
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/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-var000
/scratch/repo/fsh-generated/resources/Observation-SequencePhaseRelationExample1000
/scratch/repo/fsh-generated/resources/Observation-TMB-therapuDrug000
/scratch/repo/fsh-generated/resources/Observation-TMBExample000
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2000
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic000
/scratch/repo/fsh-generated/resources/Observation-TherapeuticImplicationExample1000
/scratch/repo/fsh-generated/resources/Observation-TumorMutationBurdenExample01000
/scratch/repo/fsh-generated/resources/Observation-TxImp01000
/scratch/repo/fsh-generated/resources/Observation-TxImp02000
/scratch/repo/fsh-generated/resources/Observation-TxImp03000
/scratch/repo/fsh-generated/resources/Observation-TxImp04000
/scratch/repo/fsh-generated/resources/Observation-TxImp05000
/scratch/repo/fsh-generated/resources/Observation-TxImp06000
/scratch/repo/fsh-generated/resources/Observation-Variant-Somatic-Clinical-Trial000
/scratch/repo/fsh-generated/resources/Observation-VariantExample000
/scratch/repo/fsh-generated/resources/Observation-VariantExample1000
/scratch/repo/fsh-generated/resources/Observation-VariantExample2000
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-significance000
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/scratch/repo/fsh-generated/resources/Observation-genotype-hla-a-glstring-r4000
/scratch/repo/fsh-generated/resources/Observation-haplotype-hla-a-1-r4000
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/scratch/repo/fsh-generated/resources/Observation-obs-idh-ex000
/scratch/repo/fsh-generated/resources/Observation-variant-with-molec-consequences000
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-dx-implications000
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-molecular-consequences000
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-specific-haplotypes000
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-specific-variants000
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-structural-intersecting-variants000
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/scratch/repo/fsh-generated/resources/Organization-ExampleLab000
/scratch/repo/fsh-generated/resources/Organization-ExampleOrg000
/scratch/repo/fsh-generated/resources/Organization-performingOrganization000
/scratch/repo/fsh-generated/resources/Parameters-FindALLPopulationSpecificVariantsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindANYPopulationSpecificVariantsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationDxImplicationsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationMolecConseqOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationSpecificHaplotypesOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationStructuralIntersectingVariantsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationStructuralSubsumingVariantsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationTxImplicationsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindStudyMetadataOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificVariantsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralIntersectingVariantsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralSubsumingVariantsOutput000
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectTxImplicationsOutput000
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/scratch/repo/fsh-generated/resources/Patient-CGPatientExample01000
/scratch/repo/fsh-generated/resources/Patient-ExamplePatient000
/scratch/repo/fsh-generated/resources/Patient-HG00403000
/scratch/repo/fsh-generated/resources/Patient-denovoChild000
/scratch/repo/fsh-generated/resources/Patient-denovoFather000
/scratch/repo/fsh-generated/resources/Patient-denovoMother000
/scratch/repo/fsh-generated/resources/Patient-genomicPatient000
/scratch/repo/fsh-generated/resources/Patient-somaticPatient000
/scratch/repo/fsh-generated/resources/Practitioner-orderingPractitioner000
/scratch/repo/fsh-generated/resources/Practitioner-pathologistPractitioner000
/scratch/repo/fsh-generated/resources/Practitioner-practitioner02000
/scratch/repo/fsh-generated/resources/Practitioner-supervisorPractitioner000
/scratch/repo/fsh-generated/resources/Procedure-PGXGenomicStudy001
/scratch/repo/fsh-generated/resources/Procedure-PGXGenomicStudyAnalysis001
/scratch/repo/fsh-generated/resources/Procedure-SequencingProcedure000
/scratch/repo/fsh-generated/resources/Procedure-analysisTumorNormalDNA001
/scratch/repo/fsh-generated/resources/Procedure-analysisTumorRNA001
/scratch/repo/fsh-generated/resources/Procedure-genomicstudy-trio2001
/scratch/repo/fsh-generated/resources/Procedure-genomicstudyanalysis-trio2001
/scratch/repo/fsh-generated/resources/Procedure-lungMass001
/scratch/repo/fsh-generated/resources/Procedure-lungMass-analysis1001
/scratch/repo/fsh-generated/resources/Procedure-lungMass-analysis2001
/scratch/repo/fsh-generated/resources/Procedure-somaticStudy001
/scratch/repo/fsh-generated/resources/RiskAssessment-GenRiskDiabetesT2002
/scratch/repo/fsh-generated/resources/ServiceRequest-ExampleServiceRequest000
/scratch/repo/fsh-generated/resources/ServiceRequest-GenomicServiceRequestExample01000
/scratch/repo/fsh-generated/resources/ServiceRequest-eMERGEServiceRequest000
/scratch/repo/fsh-generated/resources/ServiceRequest-genomicServiceRequest000
/scratch/repo/fsh-generated/resources/ServiceRequest-servicerequest-hla-a-r4000
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/scratch/repo/fsh-generated/resources/Specimen-ExampleSpecimen000
/scratch/repo/fsh-generated/resources/Specimen-GenomicSpecimenExample01000
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/scratch/repo/fsh-generated/resources/Specimen-specimen-hla-r4000
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/scratch/repo/fsh-generated/resources/StructureDefinition-coded-annotation000
/scratch/repo/fsh-generated/resources/StructureDefinition-diagnostic-implication001
/scratch/repo/fsh-generated/resources/StructureDefinition-finding001
/scratch/repo/fsh-generated/resources/StructureDefinition-followup-recommendation000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-base002
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-data-file000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-report000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-report-note000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-risk-assessment000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study002
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis002
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-change-type000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-device000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-ext000
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/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-genome-build000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-genomic-source-class010
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-input000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-method-type000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-metrics000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-output000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-protocol-performed000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-regions000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-analysis-specimen000
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/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-reference000
/scratch/repo/fsh-generated/resources/StructureDefinition-genomic-study-referrer-ext000
/scratch/repo/fsh-generated/resources/StructureDefinition-genotype001
/scratch/repo/fsh-generated/resources/StructureDefinition-haplotype001
/scratch/repo/fsh-generated/resources/StructureDefinition-implication001
/scratch/repo/fsh-generated/resources/StructureDefinition-medication-assessed-reference000
/scratch/repo/fsh-generated/resources/StructureDefinition-medication-recommendation000
/scratch/repo/fsh-generated/resources/StructureDefinition-molecular-biomarker002
/scratch/repo/fsh-generated/resources/StructureDefinition-molecular-consequence001
/scratch/repo/fsh-generated/resources/StructureDefinition-recommended-action000
/scratch/repo/fsh-generated/resources/StructureDefinition-related-artifact-component000
/scratch/repo/fsh-generated/resources/StructureDefinition-repeat-motif-order000
/scratch/repo/fsh-generated/resources/StructureDefinition-sequence-phase-relationship001
/scratch/repo/fsh-generated/resources/StructureDefinition-therapeutic-implication001
/scratch/repo/fsh-generated/resources/StructureDefinition-therapy-assessed-reference000
/scratch/repo/fsh-generated/resources/StructureDefinition-variant001
/scratch/repo/fsh-generated/resources/Task-MedicationRecommendationExample1000
/scratch/repo/fsh-generated/resources/Task-PGxRecEx01000
/scratch/repo/fsh-generated/resources/Task-PGxRecEx02000
/scratch/repo/fsh-generated/resources/Task-PGxRecEx03000
/scratch/repo/fsh-generated/resources/Task-PGxRecEx04000
/scratch/repo/fsh-generated/resources/Task-PGxRecEx05000
/scratch/repo/fsh-generated/resources/ValueSet-coded-annotation-types-vs000
/scratch/repo/fsh-generated/resources/ValueSet-condition-inheritance-mode-vs0181
/scratch/repo/fsh-generated/resources/ValueSet-dna-change-type-vs100
/scratch/repo/fsh-generated/resources/ValueSet-evidence-level-example-vs000
/scratch/repo/fsh-generated/resources/ValueSet-functional-effect-vs100
/scratch/repo/fsh-generated/resources/ValueSet-genetic-therapeutic-implications-vs000
/scratch/repo/fsh-generated/resources/ValueSet-genomic-study-change-type-vs200
/scratch/repo/fsh-generated/resources/ValueSet-genomic-study-data-format-vs000
/scratch/repo/fsh-generated/resources/ValueSet-genomic-study-method-type-vs000
/scratch/repo/fsh-generated/resources/ValueSet-genomic-study-status-vs000
/scratch/repo/fsh-generated/resources/ValueSet-genomic-study-type-vs000
/scratch/repo/fsh-generated/resources/ValueSet-hgnc-vs000
/scratch/repo/fsh-generated/resources/ValueSet-hgvs-vs000
/scratch/repo/fsh-generated/resources/ValueSet-high-low-codes-vs000
/scratch/repo/fsh-generated/resources/ValueSet-molecular-biomarker-category-vs000
/scratch/repo/fsh-generated/resources/ValueSet-molecular-biomarker-code-vs000
/scratch/repo/fsh-generated/resources/ValueSet-molecular-consequence-vs100
/scratch/repo/fsh-generated/resources/ValueSet-sequence-phase-relationship-vs000
/scratch/repo/fsh-generated/resources/ValueSet-tbd-codes-vs000
/scratch/repo/fsh-generated/resources/ValueSet-variant-confidence-status-vs000

n/a Show Validation Information

warningThe jira specification file appears to be out of date with the versions, artifacts and pages currently defined in the IG. A proposed revised file to be reviewed and, if appropriate, submitted as a pull request against the XML folder in https://github.com/HL7/JIRA-Spec-Artifacts. To see the differences, perform a file compare on 'template/jira-current.xml' (a normalized view of what is in Github) and 'template/jira-new.xml' (reflects current IG content)
output​/StructureDefinition-diagnostic-implication-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 341, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved
output​/StructureDefinition-diagnostic-implication-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 615, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved
output​/StructureDefinition-genomic-report-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 395, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved
output​/StructureDefinition-genomic-report-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 550, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved
output​/StructureDefinition-implication-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 346, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved
output​/StructureDefinition-implication-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 564, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved
output​/StructureDefinition-molecular-consequence-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 378, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved
output​/StructureDefinition-molecular-consequence-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 756, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved
output​/StructureDefinition-therapeutic-implication-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 366, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved
output​/StructureDefinition-therapeutic-implication-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/p​/a at Line 700, column 244errorThe link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json Show Validation Information (86)


fsh-generated/resources/Bundle-bundle-CYP2C19.json Show Validation Information (755)


fsh-generated/resources/Bundle-bundle-cgexample.json Show Validation Information (95)

PathSeverityMessage
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant*​/​.component[18] (l523​/c12)Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
Bundle​.entry[5]​.resource​/*Observation​/discrete-variant*​/​.component[19] (l536​/c12)Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json Show Validation Information (106)

PathSeverityMessage
Bundle​.entry[0]​.resource​/*DiagnosticReport​/report-withGrouping*​/​.result[4] (l64​/c12)Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning

fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS.json Show Validation Information (9)


fsh-generated/resources/Bundle-bundle-compound-heterozygote.json Show Validation Information (9)


fsh-generated/resources/Bundle-bundle-oncology-diagnostic.json Show Validation Information (28)


fsh-generated/resources/Bundle-bundle-oncology-report-example.json Show Validation Information (126)


fsh-generated/resources/Bundle-bundle-oncologyexamples-r4.json Show Validation Information (99)

PathSeverityMessage
Bundle​.entry[12]​.resource​/*Observation​/Inline-Instance-for-oncologyexamples-r4-14*​/​.component[0]​.extension[0] (l1324​/c16)Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning

fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping.json Show Validation Information (115)

PathSeverityMessage
Bundle​.entry[8]​.resource​/*Observation​/Inline-Instance-for-oncologyexamples-r4-withGrouping-9*​/​.component[3]​.extension[0] (l823​/c16)Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning

fsh-generated/resources/Bundle-bundle-pgxexample.json Show Validation Information (74)


fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19.json Show Validation Information (35)


fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c3047)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-coded-annotation-types-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c2291)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-genomic-study-change-type-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c2901)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-genomic-study-data-format-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c8261)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-genomic-study-method-type-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c19881)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-genomic-study-status-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c3880)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-genomic-study-type-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c6602)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c8490)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c4739)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c2252)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-tbd-codes-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c7645)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/CodeSystem-variant-confidence-status-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem (l1/c2308)informationMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

fsh-generated/resources/ConceptMap-GenomicStudyStatusMap.json Show Validation Information (1)


fsh-generated/resources/ConceptMap-dna-change-type-map.json Show Validation Information (1)

PathSeverityMessage
ConceptMap.group[0].source (l1/c6104)informationSource Code System http://loinc.org is only supported on the terminology server, so the source codes are not validated for performance reasons

fsh-generated/resources/Device-triodenovo-software.json Show Validation Information (1)


fsh-generated/resources/DiagnosticReport-GenomicReportExample01.json Show Validation Information (1)


fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE.json Show Validation Information (1)


fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE-withGrouping.json Show Validation Information (1)

PathSeverityMessage
DiagnosticReport.result[0] (l84/c6)Slicing InformationThis element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning

fsh-generated/resources/DiagnosticReport-diagnosticreport-hla-glstring-r4.json Show Validation Information (1)


fsh-generated/resources/DiagnosticReport-somaticReport.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-CNVAnalysis-called.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-FullGenome-GRCh38.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-SimpleVariantAnalysis-called.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-UncallableRegions.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-WES-FullSequencedRegion-GRCh38.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-WES-UncallableRegions-GRCh38.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-genomicFileFatherBAM.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-genomicFileMotherBAM.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-genomicFileProbandBAM.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-genomicFileProbandVCF.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-genomicVCFfile-cnv.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-genomicVCFfile-simple.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-somaticVCFfile.json Show Validation Information (1)


fsh-generated/resources/ImplementationGuide-genomics-reporting.json Show Validation Information (1)


fsh-generated/resources/MedicationStatement-MedicationStatementWarfarin.json Show Validation Information (1)


fsh-generated/resources/Observation-ATR-insertion-molc.json Show Validation Information (9)


fsh-generated/resources/Observation-ATR-insertion-significance.json Show Validation Information (9)


fsh-generated/resources/Observation-ATR-insertion-var.json Show Validation Information (9)


fsh-generated/resources/Observation-AnnotationExample.json Show Validation Information (1)


fsh-generated/resources/Observation-EGFR-L858R-molc.json Show Validation Information (9)


fsh-generated/resources/Observation-EGFR-L858R-significance.json Show Validation Information (9)


fsh-generated/resources/Observation-EGFR-L858R-therapuDrug1.json Show Validation Information (9)


fsh-generated/resources/Observation-EGFR-L858R-therapuDrug2.json Show Validation Information (9)


fsh-generated/resources/Observation-EGFR-L858R-var.json Show Validation Information (9)


fsh-generated/resources/Observation-ExampleGermlineCNV.json Show Validation Information (1)


fsh-generated/resources/Observation-ExampleGermlineDEL.json Show Validation Information (1)


fsh-generated/resources/Observation-ExampleGermlineINV.json Show Validation Information (1)


fsh-generated/resources/Observation-ExampleSomaticCNV.json Show Validation Information (1)


fsh-generated/resources/Observation-ExampleSomaticDEL.json Show Validation Information (1)


fsh-generated/resources/Observation-ExampleSomaticINV.json Show Validation Information (1)


fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes.json Show Validation Information (5)


fsh-generated/resources/Observation-GenotypeExample1.json Show Validation Information (9)


fsh-generated/resources/Observation-GenotypeExamplePharmVar.json Show Validation Information (1)


fsh-generated/resources/Observation-GrouperEx01.json Show Validation Information (9)


fsh-generated/resources/Observation-GrouperEx02.json Show Validation Information (9)


fsh-generated/resources/Observation-GrouperEx03.json Show Validation Information (9)


fsh-generated/resources/Observation-HER2byImmuneStainExample.json Show Validation Information (1)


fsh-generated/resources/Observation-HER2byImmunoassayExample.json Show Validation Information (1)


fsh-generated/resources/Observation-HLA-A-haplotype1.json Show Validation Information (9)


fsh-generated/resources/Observation-HLA-A-haplotype2.json Show Validation Information (9)


fsh-generated/resources/Observation-HLA-B-haplotype1.json Show Validation Information (9)


fsh-generated/resources/Observation-HLA-B-haplotype2.json Show Validation Information (9)


fsh-generated/resources/Observation-HLA-C-haplotype1.json Show Validation Information (9)


fsh-generated/resources/Observation-HLA-C-haplotype2.json Show Validation Information (9)


fsh-generated/resources/Observation-HaplotypeExamplePharmVar01.json Show Validation Information (3)


fsh-generated/resources/Observation-HaplotypeExamplePharmVar02.json Show Validation Information (3)


fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2.json Show Validation Information (3)


fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2.json Show Validation Information (3)


fsh-generated/resources/Observation-ISCN-CMLExample.json Show Validation Information (5)


fsh-generated/resources/Observation-ISCN-CMLImplication.json Show Validation Information (1)


fsh-generated/resources/Observation-ISCN-NormalExample.json Show Validation Information (1)


fsh-generated/resources/Observation-MSH2-del-disease.json Show Validation Information (9)


fsh-generated/resources/Observation-MSH2-del-molc.json Show Validation Information (9)


fsh-generated/resources/Observation-MSH2-del-var.json Show Validation Information (9)


fsh-generated/resources/Observation-MSIExample.json Show Validation Information (9)


fsh-generated/resources/Observation-MicrosatelliteInstabilityExample01.json Show Validation Information (1)


fsh-generated/resources/Observation-MultipleRepeatExpansions.json Show Validation Information (1)


fsh-generated/resources/Observation-NOTCH1-significance.json Show Validation Information (9)


fsh-generated/resources/Observation-NOTCH1-uncertain-molc.json Show Validation Information (9)


fsh-generated/resources/Observation-NOTCH1-uncertain-var.json Show Validation Information (9)


fsh-generated/resources/Observation-NTHL1-snv-disease.json Show Validation Information (9)


fsh-generated/resources/Observation-NTHL1-snv-molc.json Show Validation Information (9)


fsh-generated/resources/Observation-NTHL1-snv-var.json Show Validation Information (9)


fsh-generated/resources/Observation-PDL1Example.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-geno-1001.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-geno-1002.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-geno-1003.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1011.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1012.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1013.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1014.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1015.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1016.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1017.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1018.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1019.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1020.json Show Validation Information (9)


fsh-generated/resources/Observation-Pgx-var-1021.json Show Validation Information (9)


fsh-generated/resources/Observation-PolyGenicDiagnosticImpExample.json Show Validation Information (1)


fsh-generated/resources/Observation-ROS1-Fusion.json Show Validation Information (9)


fsh-generated/resources/Observation-ROS1-Fusion-disease.json Show Validation Information (9)


fsh-generated/resources/Observation-ROS1-Fusion-therapuDrug.json Show Validation Information (9)


fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial.json Show Validation Information (9)


fsh-generated/resources/Observation-ROS1-Fusion-var.json Show Validation Information (9)


fsh-generated/resources/Observation-RepeatExpansion.json Show Validation Information (1)


fsh-generated/resources/Observation-SNVexample.json Show Validation Information (5)


fsh-generated/resources/Observation-STAG2-insertion-molc.json Show Validation Information (9)


fsh-generated/resources/Observation-STAG2-insertion-significance.json Show Validation Information (9)


fsh-generated/resources/Observation-STAG2-insertion-var.json Show Validation Information (9)


fsh-generated/resources/Observation-SequencePhaseRelationExample1.json Show Validation Information (1)


fsh-generated/resources/Observation-TMB-therapuDrug.json Show Validation Information (9)


fsh-generated/resources/Observation-TMBExample.json Show Validation Information (9)


fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2.json Show Validation Information (1)


fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic.json Show Validation Information (1)


fsh-generated/resources/Observation-TherapeuticImplicationExample1.json Show Validation Information (9)


fsh-generated/resources/Observation-TumorMutationBurdenExample01.json Show Validation Information (1)


fsh-generated/resources/Observation-TxImp01.json Show Validation Information (9)


fsh-generated/resources/Observation-TxImp02.json Show Validation Information (9)


fsh-generated/resources/Observation-TxImp03.json Show Validation Information (9)


fsh-generated/resources/Observation-TxImp04.json Show Validation Information (9)


fsh-generated/resources/Observation-TxImp05.json Show Validation Information (9)


fsh-generated/resources/Observation-TxImp06.json Show Validation Information (9)


fsh-generated/resources/Observation-Variant-Somatic-Clinical-Trial.json Show Validation Information (5)


fsh-generated/resources/Observation-VariantExample.json Show Validation Information (5)


fsh-generated/resources/Observation-VariantExample1.json Show Validation Information (3)


fsh-generated/resources/Observation-VariantExample2.json Show Validation Information (5)


fsh-generated/resources/Observation-ZFHX3-significance.json Show Validation Information (9)


fsh-generated/resources/Observation-ZFHX3-uncertain-molc.json Show Validation Information (9)


fsh-generated/resources/Observation-ZFHX3-uncertain-var.json Show Validation Information (9)


fsh-generated/resources/Observation-genotype-hla-a-glstring-r4.json Show Validation Information (9)


fsh-generated/resources/Observation-haplotype-hla-a-1-r4.json Show Validation Information (9)


fsh-generated/resources/Observation-molec-conseq1.json Show Validation Information (1)


fsh-generated/resources/Observation-molec-conseq2.json Show Validation Information (1)


fsh-generated/resources/Observation-molec-conseq3.json Show Validation Information (1)


fsh-generated/resources/Observation-molec-conseq4.json Show Validation Information (1)


fsh-generated/resources/Observation-obs-idh-ex.json Show Validation Information (1)


fsh-generated/resources/Observation-variant-with-molec-consequences.json Show Validation Information (5)


fsh-generated/resources/OperationDefinition-find-population-dx-implications.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-population-molecular-consequences.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-population-specific-haplotypes.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-population-specific-variants.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-population-structural-intersecting-variants.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-population-structural-subsuming-variants.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-population-tx-implications.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-study-metadata.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-subject-dx-implications.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-subject-haplotypes.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-subject-molecular-consequences.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-subject-specific-haplotypes.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-subject-specific-variants.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-subject-structural-intersecting-variants.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-subject-structural-subsuming-variants.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-subject-tx-implications.json Show Validation Information (1)


fsh-generated/resources/OperationDefinition-find-subject-variants.json Show Validation Information (1)


fsh-generated/resources/Organization-ExampleLab.json Show Validation Information (1)


fsh-generated/resources/Organization-ExampleOrg.json Show Validation Information (1)


fsh-generated/resources/Organization-performingOrganization.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindALLPopulationSpecificVariantsOutput.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindANYPopulationSpecificVariantsOutput.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindPopulationDxImplicationsOutput.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindPopulationMolecConseqOutput.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindPopulationSpecificHaplotypesOutput.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindPopulationStructuralIntersectingVariantsOutput.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindPopulationStructuralSubsumingVariantsOutput.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindPopulationTxImplicationsOutput.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindStudyMetadataOutput.json Show Validation Information (1)


fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput.json Show Validation Information (5)


fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput.json Show Validation Information (5)


fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput.json Show Validation Information (11)


fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput.json Show Validation Information (3)


fsh-generated/resources/Parameters-FindSubjectSpecificVariantsOutput.json Show Validation Information (3)


fsh-generated/resources/Parameters-FindSubjectStructuralIntersectingVariantsOutput.json Show Validation Information (3)


fsh-generated/resources/Parameters-FindSubjectStructuralSubsumingVariantsOutput.json Show Validation Information (3)


fsh-generated/resources/Parameters-FindSubjectTxImplicationsOutput.json Show Validation Information (5)


fsh-generated/resources/Parameters-FindSubjectVariantsOutput.json Show Validation Information (3)


fsh-generated/resources/Patient-CGPatientExample01.json Show Validation Information (1)


fsh-generated/resources/Patient-ExamplePatient.json Show Validation Information (1)


fsh-generated/resources/Patient-HG00403.json Show Validation Information (1)


fsh-generated/resources/Patient-denovoChild.json Show Validation Information (1)


fsh-generated/resources/Patient-denovoFather.json Show Validation Information (1)


fsh-generated/resources/Patient-denovoMother.json Show Validation Information (1)


fsh-generated/resources/Patient-genomicPatient.json Show Validation Information (1)


fsh-generated/resources/Patient-somaticPatient.json Show Validation Information (1)


fsh-generated/resources/Practitioner-orderingPractitioner.json Show Validation Information (1)


fsh-generated/resources/Practitioner-pathologistPractitioner.json Show Validation Information (1)


fsh-generated/resources/Practitioner-practitioner02.json Show Validation Information (1)


fsh-generated/resources/Practitioner-supervisorPractitioner.json Show Validation Information (1)


fsh-generated/resources/Procedure-PGXGenomicStudy.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l9/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Procedure-PGXGenomicStudyAnalysis.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l10/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Procedure-SequencingProcedure.json Show Validation Information (1)


fsh-generated/resources/Procedure-analysisTumorNormalDNA.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l10/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Procedure-analysisTumorRNA.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l10/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Procedure-genomicstudy-trio2.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l9/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Procedure-genomicstudyanalysis-trio2.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l10/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Procedure-lungMass.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l9/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Procedure-lungMass-analysis1.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l10/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Procedure-lungMass-analysis2.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l10/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Procedure-somaticStudy.json Show Validation Information (1)

PathSeverityMessage
Procedure.category (l9/c4)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/RiskAssessment-GenRiskDiabetesT2.json Show Validation Information (1)

PathSeverityMessage
RiskAssessment​.prediction[0]​.qualitativeRisk (l74​/c8)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/risk-probability|1.0.0
RiskAssessment​.prediction[1]​.qualitativeRisk (l104​/c8)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/risk-probability|1.0.0

fsh-generated/resources/ServiceRequest-ExampleServiceRequest.json Show Validation Information (1)


fsh-generated/resources/ServiceRequest-GenomicServiceRequestExample01.json Show Validation Information (1)


fsh-generated/resources/ServiceRequest-eMERGEServiceRequest.json Show Validation Information (1)


fsh-generated/resources/ServiceRequest-genomicServiceRequest.json Show Validation Information (1)


fsh-generated/resources/ServiceRequest-servicerequest-hla-a-r4.json Show Validation Information (1)


fsh-generated/resources/ServiceRequest-somaticServiceRequest.json Show Validation Information (1)


fsh-generated/resources/Specimen-ExampleSpecimen.json Show Validation Information (1)


fsh-generated/resources/Specimen-GenomicSpecimenExample01.json Show Validation Information (1)


fsh-generated/resources/Specimen-GenomicSpecimenExample02.json Show Validation Information (1)


fsh-generated/resources/Specimen-genomicSpecimen.json Show Validation Information (1)


fsh-generated/resources/Specimen-normalSpecimen.json Show Validation Information (1)


fsh-generated/resources/Specimen-specimen-hla-r4.json Show Validation Information (1)


fsh-generated/resources/Specimen-tumorSpecimen.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-annotation-code.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-coded-annotation.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-diagnostic-implication.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[21]​.pattern​.ofType(Coding) (l1​/c84313)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-finding.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[19]​.pattern​.ofType(Coding) (l1​/c74940)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-followup-recommendation.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-base.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[19]​.pattern​.ofType(Coding) (l1​/c86241)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
StructureDefinition​.differential​.element[7]​.pattern​.ofType(Coding) (l1​/c165262)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-genomic-data-file.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-report.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-report-note.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-risk-assessment.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[21]​.pattern​.ofType(Coding) (l1​/c92951)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
StructureDefinition​.differential​.element[12]​.pattern​.ofType(Coding) (l1​/c133999)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-genomic-study-analysis.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[32]​.pattern​.ofType(Coding) (l1​/c129088)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
StructureDefinition​.differential​.element[23]​.pattern​.ofType(Coding) (l1​/c173582)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-genomic-study-analysis-change-type.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-device.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-ext.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-focus.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-genome-build.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-genomic-source-class.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'http:​/​/hl7​.org​/fhir​/uv​/genomics-reporting​/StructureDefinition​/genomic-study-analysis-genomic-source-class')warningThe Implementation Guide contains no examples for this extension

fsh-generated/resources/StructureDefinition-genomic-study-analysis-input.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-method-type.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-metrics.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-output.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-protocol-performed.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-regions.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-specimen.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-analysis-title.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-reference.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genomic-study-referrer-ext.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-genotype.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[19]​.pattern​.ofType(Coding) (l1​/c53356)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-haplotype.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[19]​.pattern​.ofType(Coding) (l1​/c55585)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-implication.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[20]​.pattern​.ofType(Coding) (l1​/c90089)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-medication-assessed-reference.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-medication-recommendation.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-molecular-biomarker.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[17]​.pattern​.ofType(Coding) (l1​/c88149)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
StructureDefinition​.differential​.element[2]​.pattern​.ofType(Coding) (l1​/c188254)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-molecular-consequence.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[20]​.pattern​.ofType(Coding) (l1​/c143615)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-recommended-action.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-related-artifact-component.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-repeat-motif-order.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-sequence-phase-relationship.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[19]​.pattern​.ofType(Coding) (l1​/c53886)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-therapeutic-implication.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[20]​.pattern​.ofType(Coding) (l1​/c117077)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/StructureDefinition-therapy-assessed-reference.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-variant.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[19]​.pattern​.ofType(Coding) (l1​/c374477)informationReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

fsh-generated/resources/Task-MedicationRecommendationExample1.json Show Validation Information (1)


fsh-generated/resources/Task-PGxRecEx01.json Show Validation Information (1)


fsh-generated/resources/Task-PGxRecEx02.json Show Validation Information (1)


fsh-generated/resources/Task-PGxRecEx03.json Show Validation Information (1)


fsh-generated/resources/Task-PGxRecEx04.json Show Validation Information (1)


fsh-generated/resources/Task-PGxRecEx05.json Show Validation Information (1)


fsh-generated/resources/ValueSet-coded-annotation-types-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-condition-inheritance-mode-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet​.compose​.include[0]​.concept[0] (l1​/c2637)warningThe code 'HP:0000006' is not valid in the system http://human-phenotype-ontology.org (Unable to evaluate based on code system with status = not-present)
ValueSet​.compose​.include[0]​.concept[0] (l1​/c2637)informationUnable to evaluate based on code system with status = not-present
ValueSet.compose.include[0].concept[1]warningThe code 'HP:0000007' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[2]warningThe code 'HP:0001417' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[3]warningThe code 'HP:0001419' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[4]warningThe code 'HP:0001423' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[5]warningThe code 'HP:0001426' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[6]warningThe code 'HP:0001427' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[7]warningThe code 'HP:0001428' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[8]warningThe code 'HP:0001450' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[9]warningThe code 'HP:0001470' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[10]warningThe code 'HP:0003743' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[11]warningThe code 'HP:0003745' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[12]warningThe code 'HP:0010983' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[13]warningThe code 'HP:0012274' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[14]warningThe code 'HP:0012275' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[15]warningThe code 'HP:0025352' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[16]warningThe code 'HP:0031362' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[0].concept[17]warningThe code 'HP:0032113' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated)

fsh-generated/resources/ValueSet-dna-change-type-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet.compose.include[0].filter[0]errorThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)

fsh-generated/resources/ValueSet-evidence-level-example-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-functional-effect-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet.compose.include[0].filter[0]errorThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001536' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)

fsh-generated/resources/ValueSet-genetic-therapeutic-implications-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-genomic-study-change-type-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet.compose.include[0].filter[0]errorThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)
ValueSet.compose.include[1].filter[0]errorThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001060' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)

fsh-generated/resources/ValueSet-genomic-study-data-format-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-genomic-study-method-type-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-genomic-study-status-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-genomic-study-type-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-hgnc-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-hgvs-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-high-low-codes-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-molecular-biomarker-category-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-molecular-biomarker-code-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-molecular-consequence-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet.compose.include[0].filter[0]errorThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001537' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)

fsh-generated/resources/ValueSet-sequence-phase-relationship-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-tbd-codes-vs.json Show Validation Information (1)


fsh-generated/resources/ValueSet-variant-confidence-status-vs.json Show Validation Information (1)

Suppressed Messages (Warnings, hints, broken links)

An example of DiagnosticImplication<Observation>.derivedFrom() that we slice to only allow our profiles. In this example, we did not define specific Variant instances and just refer to some variants by identifier (rather than a full resource), so ignoring these warnings

Code Systems for diseases - MONDO - https://terminology.hl7.org/CodeSystem-MONDO.html

Code has been checked and are correct

CodeSystem and ValueSets - dbSNP - https://terminology.hl7.org/CodeSystem-v3-dbSNP.html

CodeSystem and ValueSets - gtr - https://terminology.hl7.org/CodeSystem-GTR.html

CodeSystem and ValueSets - refseq - https://terminology.hl7.org/CodeSystem-v3-refSeq.html

CodeSystems and ValueSets - ISCN - https://terminology.hl7.org/CodeSystem-ISCN.html

CodeSystems and ValueSets - imgt HLA alleles - https://jira.hl7.org/browse/HTA-127.

CodeSystems and ValueSets not supported yet - clinvar - https://terminology.hl7.org/CodeSystem-ClinVarV.html

CodeSystems and ValueSets not supported yet -- clinicaltrials - https://jira.hl7.org/browse/HTA-126

CodeSystems and ValueSets not supported yet -- genenames -- https://terminology.hl7.org/CodeSystem-v3-hgnc.html

CodeSystems and ValueSets not supported yet -- glstring - https://jira.hl7.org/browse/HTA-84

CodeSystems and ValueSets not supported yet -- human-phenotype-ontology - https://terminology.hl7.org/CodeSystem-HPO.html

CodeSystems and ValueSets not supported yet -- pharmvar - https://jira.hl7.org/browse/HTA-85

CodeSystems and ValueSets not supported yet -- sequenceontology - https://jira.hl7.org/browse/HTA-37 (should be in THO soon)

GenomicReport<DiagnosticReport>.result referencing Observation instances. We have defined our report profile to slice .result with our Observation profiles. We allow slicing, so we can ignore informational message

Observation.component instances that do not match our slices, but is OK (and this is ok since we use open slicing)

Our Observation profiles require a code from the Observation Category value set (LAB), but in some cases require additional codes from other value sets. Since this binding is "Preferred" the resources are still conformant, so we are supressing these messages.

Suppressing OK'ed by Grahame: https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Publisher.20introducing.20extension.2C.20and.20then.20issues.20warning

Supress all references to example CodeSystems

These slice messages that have been reviewed. Each of these refer to (via derivedFrom) a Variant, and it seems it is a valid Variant instance. So, not clear why it does not match a known slice:

This is a publisher induced issue. The extension in question is introduced by the publisher. See https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/New.20ConceptMap.20Warning.20--.20induced.20by.20IG.20Publisher

We define several experimental CodeSystems that we use, so OK to supress this for all IG defined CSs

the IG Validator returns different warnings on this error: https://github.com/HL7/fhir-ig-publisher/issues/420 - in short, the validator returns the "among choices" profiles in a different order different times.

Errors sorted by type


CODESYSTEM_THO_CHECK

fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-coded-annotation-types-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-genomic-study-change-type-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-genomic-study-data-format-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-genomic-study-method-type-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-genomic-study-status-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-genomic-study-type-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-tbd-codes-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)
fsh-generated/resources/CodeSystem-variant-confidence-status-cs.jsonMost code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG)

CONCEPTMAP_GROUP_SOURCE_SERVER_SIDE

fsh-generated/resources/ConceptMap-dna-change-type-map.jsonSource Code System http://loinc.org is only supported on the terminology server, so the source codes are not validated for performance reasons

MSG_DRAFT

fsh-generated/resources/Procedure-PGXGenomicStudy.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/Procedure-PGXGenomicStudyAnalysis.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/Procedure-analysisTumorNormalDNA.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/Procedure-analysisTumorRNA.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/Procedure-genomicstudy-trio2.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/Procedure-genomicstudyanalysis-trio2.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/Procedure-lungMass.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/Procedure-lungMass-analysis1.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/Procedure-lungMass-analysis2.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/Procedure-somaticStudy.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/RiskAssessment-GenRiskDiabetesT2.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/risk-probability|1.0.0
fsh-generated/resources/RiskAssessment-GenRiskDiabetesT2.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/risk-probability|1.0.0
fsh-generated/resources/StructureDefinition-diagnostic-implication.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-finding.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-genomic-base.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-genomic-base.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-genomic-study.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-genomic-study.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-genomic-study-analysis.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-genomic-study-analysis.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-genotype.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-haplotype.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-implication.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-molecular-biomarker.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-molecular-biomarker.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-molecular-consequence.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-sequence-phase-relationship.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-therapeutic-implication.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0
fsh-generated/resources/StructureDefinition-variant.jsonReference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|1.0.0

VALUESET_BAD_FILTER_VALUE_VALID_CODE

fsh-generated/resources/ValueSet-dna-change-type-vs.jsonThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)
fsh-generated/resources/ValueSet-functional-effect-vs.jsonThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001536' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)
fsh-generated/resources/ValueSet-genomic-study-change-type-vs.jsonThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)
fsh-generated/resources/ValueSet-genomic-study-change-type-vs.jsonThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001060' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)
fsh-generated/resources/ValueSet-molecular-consequence-vs.jsonThe value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001537' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated)