Generated Tue Apr 09 14:01:34 UTC 2024, FHIR version 4.0.1 for hl7.fhir.uv.genomics-reporting#3.0.1-SNAPSHOT (canonical = http://hl7.org/fhir/uv/genomics-reporting (history)). See Errors Only
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Publisher Version: | IG Publisher Version: v1.6.4 | ||||||||||||||||||||||||
Publication Code: | genomics-reporting . PackageId = hl7.fhir.uv.genomics-reporting, Canonical = http://hl7.org/fhir/uv/genomics-reporting | ||||||||||||||||||||||||
Realm Check for UV: |
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Publication Request: | No publication request found | ||||||||||||||||||||||||
Supressed Messages: | 52 Suppressed Issues | ||||||||||||||||||||||||
Dependency Checks: |
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Dependent IGs: | 1 guide | ||||||||||||||||||||||||
Global Profiles: | (none declared) | ||||||||||||||||||||||||
Terminology Server(s): | http://tx.fhir.org/r4 (details) | ||||||||||||||||||||||||
HTA Analysis: | All OK | ||||||||||||||||||||||||
R5 Dependencies: | (none) | ||||||||||||||||||||||||
Draft Dependencies: |
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Modifier Extensions: | (none) | ||||||||||||||||||||||||
Previous Version Comparison: | Comparison with version 3.0.0-ballot | ||||||||||||||||||||||||
IPA Comparison: | n/a | ||||||||||||||||||||||||
IPS Comparison: | n/a | ||||||||||||||||||||||||
Summary: | errors = 3, warn = 19, info = 49, broken links = 0 |
warning | The jira specification file appears to be out of date with the versions, artifacts and pages currently defined in the IG. A proposed revised file to be reviewed and, if appropriate, submitted as a pull request against the XML folder in https://github.com/HL7/JIRA-Spec-Artifacts. To see the differences, perform a file compare on 'template/jira-current.xml' (a normalized view of what is in Github) and 'template/jira-new.xml' (reflects current IG content) |
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Bundle.entry[5].resource/*Observation/discrete-variant*/.component[18] (l523/c12) | Slicing Information | This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning |
Bundle.entry[5].resource/*Observation/discrete-variant*/.component[19] (l536/c12) | Slicing Information | This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning |
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Bundle.entry[0].resource/*DiagnosticReport/report-withGrouping*/.result[4] (l64/c12) | Slicing Information | This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning |
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Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-14*/.component[0].extension[0] (l1324/c16) | Slicing Information | This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning |
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Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-9*/.component[3].extension[0] (l823/c16) | Slicing Information | This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning |
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CodeSystem (l1/c3047) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c2291) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c2901) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c8261) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c19881) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c3880) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c6602) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c8490) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c4739) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c2252) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c7645) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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CodeSystem (l1/c2308) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
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ConceptMap.group[0].source (l1/c6005) | information | Source Code System http://loinc.org is only supported on the terminology server, so the source codes are not validated for performance reasons |
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DiagnosticReport.result[0] (l84/c6) | Slicing Information | This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning |
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Path | Severity | Message |
Procedure.category (l9/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
Path | Severity | Message |
Procedure.category (l10/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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Procedure.category (l10/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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Procedure.category (l10/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
Path | Severity | Message |
Procedure.category (l9/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
Path | Severity | Message |
Procedure.category (l10/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
Path | Severity | Message |
Procedure.category (l9/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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Procedure.category (l10/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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Procedure.category (l10/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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Procedure.category (l9/c4) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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RiskAssessment.prediction[0].qualitativeRisk (l74/c8) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/risk-probability|0.1.0 |
RiskAssessment.prediction[1].qualitativeRisk (l104/c8) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/risk-probability|0.1.0 |
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StructureDefinition.snapshot.element[21].pattern.ofType(Coding) (l1/c90440) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[19].pattern.ofType(Coding) (l1/c72025) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[19].pattern.ofType(Coding) (l1/c86280) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
StructureDefinition.differential.element[7].pattern.ofType(Coding) (l1/c165301) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[21].pattern.ofType(Coding) (l1/c92607) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
StructureDefinition.differential.element[12].pattern.ofType(Coding) (l1/c133655) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[31].pattern.ofType(Coding) (l1/c123286) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
StructureDefinition.differential.element[22].pattern.ofType(Coding) (l1/c167447) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[19].pattern.ofType(Coding) (l1/c51932) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[19].pattern.ofType(Coding) (l1/c54175) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[20].pattern.ofType(Coding) (l1/c67272) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[17].pattern.ofType(Coding) (l1/c88149) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
StructureDefinition.differential.element[2].pattern.ofType(Coding) (l1/c188254) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[20].pattern.ofType(Coding) (l1/c128177) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[19].pattern.ofType(Coding) (l1/c52564) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[20].pattern.ofType(Coding) (l1/c105864) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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StructureDefinition.snapshot.element[19].pattern.ofType(Coding) (l1/c353510) | information | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
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ValueSet.compose.include[0].concept[0] (l1/c2637) | warning | The code 'HP:0000006' is not valid in the system http://human-phenotype-ontology.org (Unable to evaluate based on code system with status = not-present) |
ValueSet.compose.include[0].concept[0] (l1/c2637) | information | Unable to evaluate based on code system with status = not-present |
ValueSet.compose.include[0].concept[1] | warning | The code 'HP:0000007' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[2] | warning | The code 'HP:0001417' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[3] | warning | The code 'HP:0001419' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[4] | warning | The code 'HP:0001423' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[5] | warning | The code 'HP:0001426' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[6] | warning | The code 'HP:0001427' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[7] | warning | The code 'HP:0001428' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[8] | warning | The code 'HP:0001450' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[9] | warning | The code 'HP:0001470' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[10] | warning | The code 'HP:0003743' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[11] | warning | The code 'HP:0003745' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[12] | warning | The code 'HP:0010983' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[13] | warning | The code 'HP:0012274' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[14] | warning | The code 'HP:0012275' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[15] | warning | The code 'HP:0025352' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[16] | warning | The code 'HP:0031362' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
ValueSet.compose.include[0].concept[17] | warning | The code 'HP:0032113' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) |
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ValueSet.compose.include[0].filter[0] | error | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
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ValueSet.compose.include[0].filter[0] | error | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001536' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
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ValueSet.compose.include[0].filter[0] | error | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001537' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
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Suppressed Messages (Warnings, hints, broken links)
An example of DiagnosticImplication<Observation>.derivedFrom() that we slice to only allow our profiles. In this example, we did not define specific Variant instances and just refer to some variants by identifier (rather than a full resource), so ignoring these warnings
Code Systems for diseases - MONDO - https://terminology.hl7.org/CodeSystem-MONDO.html
Code has been checked and are correct
CodeSystem and ValueSets - dbSNP - https://terminology.hl7.org/CodeSystem-v3-dbSNP.html
CodeSystem and ValueSets - gtr - https://terminology.hl7.org/CodeSystem-GTR.html
CodeSystem and ValueSets - refseq - https://terminology.hl7.org/CodeSystem-v3-refSeq.html
CodeSystems and ValueSets - ISCN - https://terminology.hl7.org/CodeSystem-ISCN.html
CodeSystems and ValueSets - imgt HLA alleles - https://jira.hl7.org/browse/HTA-127.
CodeSystems and ValueSets not supported yet - clinvar - https://terminology.hl7.org/CodeSystem-ClinVarV.html
CodeSystems and ValueSets not supported yet -- clinicaltrials - https://jira.hl7.org/browse/HTA-126
CodeSystems and ValueSets not supported yet -- genenames -- https://terminology.hl7.org/CodeSystem-v3-hgnc.html
CodeSystems and ValueSets not supported yet -- glstring - https://jira.hl7.org/browse/HTA-84
CodeSystems and ValueSets not supported yet -- human-phenotype-ontology - https://terminology.hl7.org/CodeSystem-HPO.html
CodeSystems and ValueSets not supported yet -- pharmvar - https://jira.hl7.org/browse/HTA-85
CodeSystems and ValueSets not supported yet -- sequenceontology - https://jira.hl7.org/browse/HTA-37 (should be in THO soon)
GenomicReport<DiagnosticReport>.result referencing Observation instances. We have defined our report profile to slice .result with our Observation profiles. We allow slicing, so we can ignore informational message
Observation.component instances that do not match our slices, but is OK (and this is ok since we use open slicing)
Our Observation profiles require a code from the Observation Category value set (LAB), but in some cases require additional codes from other value sets. Since this binding is "Preferred" the resources are still conformant, so we are supressing these messages.
Suppressing OK'ed by Grahame: https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Publisher.20introducing.20extension.2C.20and.20then.20issues.20warning
Supress all references to example CodeSystems
These slice messages that have been reviewed. Each of these refer to (via derivedFrom) a Variant, and it seems it is a valid Variant instance. So, not clear why it does not match a known slice:
This is a publisher induced issue. The extension in question is introduced by the publisher. See https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/New.20ConceptMap.20Warning.20--.20induced.20by.20IG.20Publisher
We define several experimental CodeSystems that we use, so OK to supress this for all IG defined CSs
the IG Validator returns different warnings on this error: https://github.com/HL7/fhir-ig-publisher/issues/420 - in short, the validator returns the "among choices" profiles in a different order different times.
Errors sorted by type
fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-coded-annotation-types-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-genomic-study-change-type-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-genomic-study-data-format-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-genomic-study-method-type-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-genomic-study-status-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-genomic-study-type-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-tbd-codes-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/CodeSystem-variant-confidence-status-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
fsh-generated/resources/ConceptMap-dna-change-type-map.json | Source Code System http://loinc.org is only supported on the terminology server, so the source codes are not validated for performance reasons |
fsh-generated/resources/Procedure-PGXGenomicStudy.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/Procedure-PGXGenomicStudyAnalysis.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/Procedure-analysisTumorNormalDNA.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/Procedure-analysisTumorRNA.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/Procedure-genomicstudy-trio2.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/Procedure-genomicstudyanalysis-trio2.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/Procedure-lungMass.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/Procedure-lungMass-analysis1.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/Procedure-lungMass-analysis2.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/Procedure-somaticStudy.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/RiskAssessment-GenRiskDiabetesT2.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/risk-probability|0.1.0 |
fsh-generated/resources/RiskAssessment-GenRiskDiabetesT2.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/risk-probability|0.1.0 |
fsh-generated/resources/StructureDefinition-diagnostic-implication.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-finding.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-genomic-base.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-genomic-base.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-genomic-study.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-genomic-study.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-genomic-study-analysis.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-genomic-study-analysis.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-genotype.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-haplotype.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-implication.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-molecular-biomarker.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-molecular-biomarker.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-molecular-consequence.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-sequence-phase-relationship.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-therapeutic-implication.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/StructureDefinition-variant.json | Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category|0.1.0 |
fsh-generated/resources/ValueSet-dna-change-type-vs.json | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
fsh-generated/resources/ValueSet-functional-effect-vs.json | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001536' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
fsh-generated/resources/ValueSet-molecular-consequence-vs.json | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001537' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |