Validation Results for GenomicsReporting
Generated Thu Sep 12 17:15:51 UTC 2024, FHIR version 4.0.1 for hl7.fhir.uv.genomics-reporting#3.0.1-SNAPSHOT (canonical = http://hl7.org/fhir/uv/genomics-reporting (history)). See Errors Only
| Quality Checks |
| Publisher Version: | IG Publisher Version: v1.6.24 |
| Publication Code: | genomics-reporting . PackageId = hl7.fhir.uv.genomics-reporting, Canonical = http://hl7.org/fhir/uv/genomics-reporting |
| Realm Check for UV: | |
| Publication Request: | No publication request found  |
| Supressed Messages: | 68 Suppressed Issues
|
| Dependency Checks: | | Package | Version | FHIR | Canonical | Web Base | Comment |
|---|
  hl7.fhir.uv.genomics-reporting | 3.0.1-SNAPSHOT | R4 | http://hl7.org/fhir/uv/genomics-reporting | | |
 hl7.terminology.r4 | 6.0.2 M | R4 | http://terminology.hl7.org | http://terminology.hl7.org/6.0.2 | |
 hl7.fhir.uv.extensions.r4 | 5.1.0 M | R4 | http://hl7.org/fhir/extensions | http://hl7.org/fhir/extensions/5.1.0 | |
Templates: hl7.fhir.template#0.10.1 -> hl7.base.template#0.10.1 -> fhir.base.template#0.8.1. Tools: 0.2.0 |
| Dependent IGs: | 1 guide |
| Global Profiles: | (none declared) |
| Terminology Server(s): | http://tx.fhir.org/r4 (details) |
| HTA Analysis: | All OK |
| R5 Dependencies: | (none) |
| Draft Dependencies: |
-
hl7.fhir.r4.core#4.0.1: GuideParameterCode
(15 uses), allele-database
(3 uses), glstring
(3 uses), EventStatus
(3 uses), EventStatus
(1 uses), Practitioner
(33 uses), RelatedPerson
(23 uses), Organization
(28 uses), CommonLanguages
(17 uses), CarePlan
(15 uses), DeviceRequest
(11 uses), ImmunizationRecommendation
(12 uses), MedicationRequest
(12 uses), NutritionOrder
(12 uses), ServiceRequest
(15 uses), MedicationAdministration
(14 uses), MedicationDispense
(12 uses), MedicationStatement
(14 uses), Procedure
(19 uses), Immunization
(12 uses), ImagingStudy
(24 uses), ObservationCategoryCodes
(34 uses), LOINCCodes
(98 uses), Group
(17 uses), Device
(38 uses), Location
(16 uses), Encounter
(17 uses), PractitionerRole
(31 uses), CareTeam
(15 uses), SNOMEDCTBodyStructures
(13 uses), ObservationMethods
(8 uses), Specimen
(14 uses), DeviceMetric
(11 uses), ObservationReferenceRangeMeaningCodes
(11 uses), ObservationReferenceRangeAppliesToCodes
(11 uses), QuestionnaireResponse
(22 uses), MolecularSequence
(26 uses), DocumentReference
(16 uses), Media
(12 uses), Task
(8 uses), ActivityDefinition
(4 uses), TaskStatus
(2 uses), TaskIntent
(2 uses), RequestPriority
(2 uses), ProcedurePerformerRoleCodes
(4 uses), HealthcareService
(2 uses), Coverage
(2 uses), ClaimResponse
(2 uses), Provenance
(2 uses), DocumentReferenceStatus
(1 uses), CompositionStatus
(1 uses), DocumentRelationshipType
(1 uses), EpisodeOfCare
(1 uses), DiagnosticReport
(4 uses), DiagnosticReportStatus
(1 uses), DiagnosticServiceSectionCodes
(2 uses), LOINCDiagnosticReportCodes
(1 uses), SNOMEDCTClinicalFindings
(1 uses), RiskAssessment
(2 uses), PlanDefinition
(6 uses), ProcedureCategoryCodes(SNOMEDCT)
(2 uses), ProcedureCodes(SNOMEDCT)
(1 uses), ProcedureReasonCodes
(2 uses), Condition
(5 uses), ProcedureOutcomeCodes(SNOMEDCT)
(2 uses), Composition
(2 uses), Condition/Problem/DiagnosisCodes
(2 uses), ProcedureFollowUpCodes(SNOMEDCT)
(2 uses), ProcedureDeviceActionCodes
(2 uses), Medication
(4 uses), Substance
(2 uses), FHIRDeviceTypes
(2 uses), MedicationKnowledge
(2 uses), ResearchStudy
(2 uses)
-
hl7.fhir.uv.tools#0.2.0: ResourceSortExt
(290 uses)
|
| Modifier Extensions: | (none) |
| Previous Version Comparison: | Comparison with version 3.0.0-ballot |
| IPA Comparison: | n/a |
| IPS Comparison: | n/a |
| Summary: | errors = 5, warn = 1, info = 16, broken links = 0 |
n/a Show Validation Information
| warning | The jira specification file appears to be out of date with the versions, artifacts and pages currently defined in the IG. A proposed revised file to be reviewed and, if appropriate, submitted as a pull request against the XML folder in https://github.com/HL7/JIRA-Spec-Artifacts. To see the differences, perform a file compare on 'template/jira-current.xml' (a normalized view of what is in Github) and 'template/jira-new.xml' (reflects current IG content) |
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.Patient
- Bundle.entry[1].resource: Validated against fhir.Specimen
- Bundle.entry[2].resource: Validated against fhir.Organization
- Bundle.entry[3].resource: Validated against fhir.Organization
- Bundle.entry[4].resource: Validated against fhir.ServiceRequest
- Bundle.entry[5].resource: Validated against fhir.MolecularSequence
- Bundle.entry[6].resource: Validated against fhir.MolecularSequence
- Bundle.entry[7].resource: Validated against fhir.MolecularSequence
- Bundle.entry[8].resource: Validated against fhir.MolecularSequence
- Bundle.entry[9].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype and this.Molecular Biomarker
- Bundle.entry[10].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype and this.Molecular Biomarker
- Bundle.entry[11].resource: Validated against fhir.Observation, this.Genotype (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[12].resource: Validated against fhir.MolecularSequence
- Bundle.entry[13].resource: Validated against fhir.MolecularSequence
- Bundle.entry[14].resource: Validated against fhir.MolecularSequence
- Bundle.entry[15].resource: Validated against fhir.MolecularSequence
- Bundle.entry[16].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype and this.Molecular Biomarker
- Bundle.entry[17].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype and this.Molecular Biomarker
- Bundle.entry[18].resource: Validated against fhir.Observation, this.Genotype (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[19].resource: Validated against fhir.MolecularSequence
- Bundle.entry[20].resource: Validated against fhir.MolecularSequence
- Bundle.entry[21].resource: Validated against fhir.MolecularSequence
- Bundle.entry[22].resource: Validated against fhir.MolecularSequence
- Bundle.entry[23].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype and this.Molecular Biomarker
- Bundle.entry[24].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype and this.Molecular Biomarker
- Bundle.entry[25].resource: Validated against fhir.Observation, this.Genotype (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[26].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[1].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[2].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[3].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[4].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[5].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[6].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[7].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[8].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[9].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[10].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[11].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[12].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[13].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[14].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[15].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[16].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[17].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[18].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[19].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[20].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[21].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[22].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[23].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[24].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[25].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[26].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[27].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[28].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[29].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[30].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[31].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[32].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[33].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[34].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[35].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[36].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[37].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[38].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[39].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[40].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[41].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[42].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[43].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[44].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[45].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[46].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[47].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[48].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[49].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[50].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[51].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[52].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[53].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[54].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[55].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[56].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[57].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[58].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[59].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Haplotype, this.Diagnostic Implication, this.Genotype, this.Molecular Biomarker, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[60].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Haplotype, this.Diagnostic Implication, this.Genotype, this.Molecular Biomarker, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[61].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[62].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[63].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[64].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[65].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[66].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[67].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[68].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[69].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[70].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[71].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[72].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[73].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[74].resource: Validated against fhir.Observation, this.Sequence Phase Relationship (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[75].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
- Bundle.entry[76].resource: Validated against fhir.Organization
- Bundle.entry[77].resource: Validated against fhir.Patient
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
- Bundle.entry[1].resource: Validated against fhir.Patient
- Bundle.entry[2].resource: Validated against fhir.Specimen
- Bundle.entry[3].resource: Validated against fhir.Organization
- Bundle.entry[4].resource: Validated against fhir.ServiceRequest
- Bundle.entry[5].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Genotype, this.Haplotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[6].resource: Validated against fhir.Observation, this.Diagnostic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[7].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Genotype, this.Haplotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[8].resource: Validated against fhir.Observation, this.Diagnostic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[9].resource: Validated against fhir.Observation and this.Variant (per meta)
- Bundle.entry[10].resource: Validated against fhir.Observation and this.Variant (per meta)
- Bundle.entry[11].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype, this.Diagnostic Implication, this.Molecular Biomarker, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[12].resource: Validated against fhir.Observation, this.Genotype (per meta), this.Variant, this.Genotype, this.Haplotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[13].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[14].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[15].resource: Validated against fhir.Observation and this.Therapeutic Implication (per meta)
- Bundle.entry[16].resource: Validated against fhir.Task and this.Medication Recommendation (per meta)
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
- Bundle.entry[1].resource: Validated against fhir.Patient
- Bundle.entry[2].resource: Validated against fhir.Specimen
- Bundle.entry[3].resource: Validated against fhir.Organization
- Bundle.entry[4].resource: Validated against fhir.ServiceRequest
- Bundle.entry[5].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Genotype, this.Haplotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[6].resource: Validated against fhir.Observation, this.Diagnostic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[7].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Genotype, this.Haplotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[8].resource: Validated against fhir.Observation, this.Diagnostic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[9].resource: Validated against fhir.Observation and this.Variant (per meta)
- Bundle.entry[10].resource: Validated against fhir.Observation and this.Variant (per meta)
- Bundle.entry[11].resource: Validated against fhir.Observation, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[12].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype, this.Diagnostic Implication, this.Molecular Biomarker, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[13].resource: Validated against this.Variant, this.Genotype (per meta), this.Genotype, this.Haplotype, this.Molecular Biomarker, fhir.Observation, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[14].resource: Validated against this.Therapeutic Implication, this.Diagnostic Implication, this.Therapeutic Implication (per meta), this.Molecular Consequence, fhir.Observation, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[15].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[16].resource: Validated against fhir.Observation and this.Therapeutic Implication (per meta)
- Bundle.entry[17].resource: Validated against this.Medication Recommendation, this.Followup Recommendation, this.Medication Recommendation (per meta) and fhir.Task
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.Patient
- Bundle.entry[1].resource: Validated against fhir.Practitioner
- Bundle.entry[2].resource: Validated against fhir.Specimen
- Bundle.entry[3].resource: Validated against fhir.Observation and this.Molecular Biomarker (per meta)
- Bundle.entry[4].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Genotype, this.Haplotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[5].resource: Validated against fhir.Observation, this.Diagnostic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[6].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.Organization
- Bundle.entry[1].resource: Validated against fhir.Patient
- Bundle.entry[2].resource: Validated against fhir.Specimen
- Bundle.entry[3].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[4].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[5].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[6].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[7].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[8].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[9].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[10].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[11].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[12].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[13].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[14].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[15].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.Patient
- Bundle.entry[1].resource: Validated against fhir.Practitioner
- Bundle.entry[2].resource: Validated against fhir.Specimen
- Bundle.entry[3].resource: Validated against fhir.Observation, this.Molecular Biomarker (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[4].resource: Validated against fhir.Observation, this.Molecular Biomarker (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[5].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Genotype, this.Haplotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[6].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[7].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[8].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[9].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[10].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[11].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[12].resource: Validated against fhir.Observation and this.Therapeutic Implication (per meta)
- Bundle.entry[12].resource.contained[0]: Validated against fhir.PlanDefinition
- Bundle.entry[13].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
| Path | Severity | Message |
| Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-14*/.component[0].extension[0] (l1324/c16) | Slicing Information | This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning This element does not match any known slice Defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) - Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-14*/.component[0].extension[0]: discriminator = true and ('http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/workflow-relatedArtifactComponent' in url)
|
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.Patient
- Bundle.entry[1].resource: Validated against fhir.Practitioner
- Bundle.entry[2].resource: Validated against fhir.Specimen
- Bundle.entry[3].resource: Validated against fhir.Observation, this.Molecular Biomarker (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[4].resource: Validated against fhir.Observation, this.Molecular Biomarker (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[5].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Genotype, this.Haplotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[6].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[7].resource: Validated against fhir.Observation, this.Variant (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[8].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[8].resource.contained[0]: Validated against fhir.MedicationKnowledge
- Bundle.entry[9].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[10].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[11].resource: Validated against fhir.Observation, this.Therapeutic Implication (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[12].resource: Validated against fhir.Observation, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[13].resource: Validated against fhir.Observation, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[14].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
| Path | Severity | Message |
| Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-9*/.component[3].extension[0] (l823/c16) | Slicing Information | This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning This element does not match any known slice Defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication|3.0.1-SNAPSHOT (this may not be a problem, but you should check that it's not intended to match a slice) - Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-9*/.component[3].extension[0]: discriminator = true and ('http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/workflow-relatedArtifactComponent' in url)
|
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
- Bundle.entry[1].resource: Validated against fhir.Patient
- Bundle.entry[2].resource: Validated against fhir.Specimen
- Bundle.entry[3].resource: Validated against fhir.Organization
- Bundle.entry[4].resource: Validated against fhir.ServiceRequest
- Bundle.entry[5].resource: Validated against this.Therapeutic Implication, this.Diagnostic Implication, this.Therapeutic Implication (per meta), this.Molecular Consequence, fhir.Observation, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[6].resource: Validated against this.Variant, this.Genotype (per meta), this.Genotype, this.Haplotype, this.Molecular Biomarker, fhir.Observation, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[7].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[8].resource: Validated against fhir.Observation, this.Haplotype (per meta), this.Haplotype, this.Variant, this.Genotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[9].resource: Validated against fhir.Observation, this.Variant (per meta), this.Haplotype, this.Variant, this.Genotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[10].resource: Validated against fhir.Observation, this.Variant (per meta), this.Haplotype, this.Variant, this.Genotype, this.Molecular Biomarker, this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[11].resource: Validated against fhir.MolecularSequence
- Bundle.entry[12].resource: Validated against fhir.MolecularSequence
- Bundle.entry[13].resource: Validated against this.Medication Recommendation, this.Followup Recommendation, this.Medication Recommendation (per meta) and fhir.Task
- Bundle.entry[14].resource: Validated against fhir.MedicationStatement
- Bundle: Validated against fhir.Bundle
- Bundle.entry[0].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Haplotype, this.Diagnostic Implication, this.Genotype, this.Molecular Biomarker, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[1].resource: Validated against fhir.Observation, this.Variant (per meta), this.Variant, this.Haplotype, this.Diagnostic Implication, this.Genotype, this.Molecular Biomarker, this.Therapeutic Implication, this.Molecular Consequence and this.Sequence Phase Relationship
- Bundle.entry[2].resource: Validated against fhir.Observation, this.Sequence Phase Relationship (per meta), this.Diagnostic Implication, this.Therapeutic Implication, this.Molecular Consequence, this.Variant, this.Sequence Phase Relationship, this.Genotype, this.Haplotype and this.Molecular Biomarker
- Bundle.entry[3].resource: Validated against fhir.DiagnosticReport and this.Genomic Report (per meta)
- Bundle.entry[4].resource: Validated against fhir.Organization
- Bundle.entry[5].resource: Validated against fhir.Patient
| Path | Severity | Message |
| CodeSystem (l1/c3306) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c2522) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c3145) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c8505) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c20125) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c4104) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c6818) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c8746) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c5002) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c2504) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c7824) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| CodeSystem (l1/c2551) | information | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| Path | Severity | Message |
| ConceptMap.group[0].source (l1/c4550) | information | Source Code System http://loinc.org is only supported on the terminology server, so the source codes are not validated for performance reasons |
- ImplementationGuide/hl7.fhir.uv.genomics-reporting: ImplementationGuide: Validated against fhir.ImplementationGuide
- Observation: Validated against this.Variant
- Observation: Validated against this.Variant
- Observation: Validated against this.Variant
- Observation: Validated against this.Variant
- Observation: Validated against this.Variant
- Observation: Validated against this.Variant
- Observation: Validated against this.Genotype
- Observation: Validated against this.Variant
- Observation: Validated against this.Variant
- Observation: Validated against this.Variant
| Path | Severity | Message |
| ValueSet.compose.include[0].filter[0] | error | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
| Path | Severity | Message |
| ValueSet.compose.include[0].filter[0] | error | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001536' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
| Path | Severity | Message |
| ValueSet.compose.include[0].filter[0] | error | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
| ValueSet.compose.include[1].filter[0] | error | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001060' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
| Path | Severity | Message |
| ValueSet.compose.include[1].concept[0] (l1/c5641) | information | Unknown Code 'C120465' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment |
| Path | Severity | Message |
| ValueSet.compose.include[0].filter[0] | error | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001537' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
Suppressed Messages (Warnings, hints, broken links)
An example of DiagnosticImplication<Observation>.derivedFrom() that we slice to only allow our profiles. In this example, we did not define specific Variant instances and just refer to some variants by identifier (rather than a full resource), so ignoring these warnings
- INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication% (1 uses)
- INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication% (1 uses)
Code Systems for diseases - MONDO - https://terminology.hl7.org/CodeSystem-MONDO.html
- A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (3 uses)
CodeSystem and ValueSets - dbSNP - https://terminology.hl7.org/CodeSystem-v3-dbSNP.html
- A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated (3 uses)
- A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' version '137' could not be found, so the code cannot be validated. Valid versions: [] (1 uses)
CodeSystem and ValueSets - gtr - https://terminology.hl7.org/CodeSystem-GTR.html
- A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated (15 uses)
CodeSystem and ValueSets - refseq - https://terminology.hl7.org/CodeSystem-v3-refSeq.html
- A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (150 uses)
CodeSystems and ValueSets - ISCN - https://terminology.hl7.org/CodeSystem-ISCN.html
- A definition for CodeSystem 'https://iscn.karger.com' could not be found, so the code cannot be validated (2 uses)
CodeSystems and ValueSets - imgt HLA alleles - https://jira.hl7.org/browse/HTA-127.
- A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated (8 uses)
- A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. Valid versions: [] (19 uses)
- A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.31.0' could not be found, so the code cannot be validated. Valid versions: [] (1 uses)
CodeSystems and ValueSets not supported yet - clinvar - https://terminology.hl7.org/CodeSystem-ClinVarV.html
- A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated (15 uses)
- A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' version '???' could not be found, so the code cannot be validated. Valid versions: [] (1 uses)
CodeSystems and ValueSets not supported yet -- clinicaltrials - https://jira.hl7.org/browse/HTA-126
- A definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated (3 uses)
CodeSystems and ValueSets not supported yet -- genenames -- https://terminology.hl7.org/CodeSystem-v3-hgnc.html
- %Unable to provide support for code system http://www.genenames.org (1 uses)
- %because the code system http://www.genenames.org was not found (184 uses)
- A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated% (97 uses)
CodeSystems and ValueSets not supported yet -- glstring - https://jira.hl7.org/browse/HTA-84
- A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. Valid versions: [] (5 uses)
CodeSystems and ValueSets not supported yet -- human-phenotype-ontology - https://terminology.hl7.org/CodeSystem-HPO.html
- %Unable to provide support for code system http://human-phenotype-ontology.org (1 uses)
- %because the code system http://human-phenotype-ontology.org was not found (2 uses)
- A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (1 uses)
CodeSystems and ValueSets not supported yet -- pharmvar - https://jira.hl7.org/browse/HTA-85
- A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated (11 uses)
CodeSystems and ValueSets not supported yet -- sequenceontology - https://jira.hl7.org/browse/HTA-37 (should be in THO soon)
- %Unable to provide support for code system http://sequenceontology.org (4 uses)
- %because the code system http://sequenceontology.org was not found (63 uses)
- %because the code system http://sequenceontology.org, http://sequenceontology.org was not found (2 uses)
- A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated (71 uses)
Each of these codes have been validated (as of Jul 5 2024), so suppressing these warnings until HPO becomes a supported code system.
- INFORMATION: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[0]: Unable to evaluate based on code system with status = not-present (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[0]: The code 'HP:0000006' is not valid in the system http://human-phenotype-ontology.org (Unable to evaluate based on code system with status = not-present) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[10]: The code 'HP:0003743' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[11]: The code 'HP:0003745' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[12]: The code 'HP:0010983' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[13]: The code 'HP:0012274' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[14]: The code 'HP:0012275' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[15]: The code 'HP:0025352' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[16]: The code 'HP:0032113' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[1]: The code 'HP:0000007' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[2]: The code 'HP:0001417' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[3]: The code 'HP:0001419' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[4]: The code 'HP:0001423' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[5]: The code 'HP:0001426' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[6]: The code 'HP:0001427' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[7]: The code 'HP:0001442' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[8]: The code 'HP:0001450' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
- WARNING: ValueSet/condition-inheritance-mode-vs: ValueSet.compose.include[0].concept[9]: The code 'HP:0001470' is not valid in the system http://human-phenotype-ontology.org (A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated) (1 uses)
GenomicReport<DiagnosticReport>.result referencing Observation instances. We have defined our report profile to slice .result with our Observation profiles. We allow slicing, so we can ignore informational message
- INFORMATION: Bundle/bundle-cgexample-withGrouping: Bundle.entry[0].resource/*DiagnosticReport/report-withGrouping*/.result[4]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
- INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource/*DiagnosticReport/Inline-Instance-for-oncologyexamples-r4-withGrouping-15*/.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
- INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource/*DiagnosticReport/Inline-Instance-for-oncologyexamples-r4-withGrouping-15*/.result[6]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
- INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
- INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
- INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[2]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
Have reviewed this and we are using the CodeSystem recommended by binding in r4 (Observation.category, RiskAssessment.prediction.qualitativeRisk)
- %Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/observation-category% (0 uses)
- %Reference to draft CodeSystem http://terminology.hl7.org/CodeSystem/risk-probability% (0 uses)
Observation.component instances that do not match our slices, but is OK (and this is ok since we use open slicing)
- INFORMATION: Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[18]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)
- INFORMATION: Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[19]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)
- INFORMATION: Observation/variant-with-molec-consequences: Observation.component[9]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)
Our Observation profiles require a code from the Observation Category value set (LAB), but in some cases require additional codes from other value sets. Since this binding is "Preferred" the resources are still conformant, so we are supressing these messages.
- None of the codings provided are in the value set 'Observation Category Codes' (http://hl7.org/fhir/ValueSet/observation-category|4.0.1), and a coding is recommended to come from this value set (codes = http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs#biomarker-category) (5 uses)
- None of the codings provided are in the value set 'Observation Category Codes' (http://hl7.org/fhir/ValueSet/observation-category|4.0.1), and a coding is recommended to come from this value set (codes = http://terminology.hl7.org/CodeSystem/v2-0074#GE) (179 uses)
Suppressing OK'ed by Grahame: https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Publisher.20introducing.20extension.2C.20and.20then.20issues.20warning
- The modifier extension http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence from FHIR version 1.0 is not allowed to be used at this point (allowed = e:ConceptMap.element.target; this element is [[BackboneElement, ConceptMap.group.element.target]; this is a warning since contexts may be renamed between FHIR versions) (0 uses)
Supress all references to example CodeSystems
- A definition for CodeSystem 'http://example.org/% (11 uses)
These slice messages that have been reviewed. Each of these refer to (via derivedFrom) a Variant, and it seems it is a valid Variant instance. So, not clear why it does not match a known slice:
- INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
- INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[1].resource/*Observation/MC2*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
- INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[2].resource/*Observation/MC3*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
- INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[3].resource/*Observation/MC4*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
We define several experimental CodeSystems that we use, so OK to supress this for all IG defined CSs
- Reference to experimental CodeSystem http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/% (267 uses)
the IG Validator returns different warnings on this error: https://github.com/HL7/fhir-ig-publisher/issues/420 - in short, the validator returns the "among choices" profiles in a different order different times.
- Found multiple matching profiles for Task/med-usage-impact-task-pgx-example among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation (1 uses)
- Found multiple matching profiles for Task/med-usage-impact-task-pgx-example among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation (0 uses)
- Found multiple matching profiles for Task/usage-1a among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation (1 uses)
- Found multiple matching profiles for Task/usage-1a among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation (0 uses)
Errors sorted by type
CODESYSTEM_THO_CHECK
| fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-coded-annotation-types-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-genomic-study-change-type-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-genomic-study-data-format-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-genomic-study-method-type-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-genomic-study-status-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-genomic-study-type-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-tbd-codes-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
| fsh-generated/resources/CodeSystem-variant-confidence-status-cs.json | Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) |
CONCEPTMAP_GROUP_SOURCE_SERVER_SIDE
VALUESET_BAD_FILTER_VALUE_VALID_CODE
| fsh-generated/resources/ValueSet-dna-change-type-vs.json | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
| fsh-generated/resources/ValueSet-functional-effect-vs.json | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001536' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
| fsh-generated/resources/ValueSet-genomic-study-change-type-vs.json | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0002072' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
| fsh-generated/resources/ValueSet-genomic-study-change-type-vs.json | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001060' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |
| fsh-generated/resources/ValueSet-molecular-consequence-vs.json | The value for a filter based on property 'concept' must be a valid code from the system 'http://sequenceontology.org', and 'SO:0001537' is not (A definition for CodeSystem 'http://sequenceontology.org' could not be found, so the code cannot be validated) |