Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

ValueSet: Genomic Study Data Format ValueSet

Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-data-format-vs Version: 3.0.1-SNAPSHOT
Active as of 2024-07-08 Computable Name: GenomicStudyDataFormatVS

Backport of http://hl7.org/fhir/ValueSet/genomicstudy-dataformat

References

Logical Definition (CLD)

Generated Narrative: ValueSet genomic-study-data-format-vs

 

Expansion

Generated Narrative: ValueSet

Expansion based on codesystem Genomic Study Data Format CodeSystem v3.0.1-SNAPSHOT (CodeSystem)

This value set contains 40 concepts

CodeSystemDisplay
  bamhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csBAM
  bedhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csBED
  bedpehttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csBEDPE
  bedgraphhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csBedGraph
  bigbedhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csbigBed
  bigWighttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csbigWig
  birdsuite-fileshttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csBirdsuite-Files
  broadpeakhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csbroadPeak
  cbshttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csCBS
  chemical-reactivity-probing-profileshttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csChemical-Reactivity-Probing-Profiles
  chrom-sizeshttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cschrom-sizes
  cnhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csCN
  custom-file-formatshttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csCustom-File-Formats
  cytobandhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csCytoband
  fastahttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csFASTA
  gcthttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csGCT
  cramhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csCRAM
  genepredhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csgenePred
  gff-gtfhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csGFF/GTF
  gistichttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csGISTIC
  gobyhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csGoby
  gwashttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csGWAS
  igvhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csIGV
  lohhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csLOH
  maf-multiple-alignment-formathttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csMAF-Multiple Alignment Format
  maf-mutation-annotation-formathttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csMAF-Mutation-Annotation-Format
  merged-bam-filehttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csMerged BAM File
  muthttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csMUT
  narrowpeakhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csnarrowPeak
  pslhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csPSL
  reshttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csRES
  rna-secondary-structure-formatshttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csRNA-Secondary-Structure-Formats
  samhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csSAM
  sample-info-attributes-filehttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csSample-Info-Attributes-file
  seghttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csSEG
  tdfhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csTDF
  track-linehttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csTrack Line
  type-linehttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csType Line
  vcfhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csVCF
  wighttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-csWIG

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code