Genomics Reporting Implementation Guide
4.0.0-ballot - STU 4 ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

ValueSet: Genomic Study Data Format ValueSet

Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-data-format-vs Version: 4.0.0-ballot
Standards status: Trial-use Maturity Level: 2 Computable Name: GenomicStudyDataFormatVS

Backport of http://hl7.org/fhir/ValueSet/genomicstudy-dataformat

References

Logical Definition (CLD)

 

Expansion

Expansion performed internally based on codesystem Genomic Study Data Format CodeSystem v4.0.0-ballot (CodeSystem)

This value set contains 40 concepts

SystemCodeDisplay (en)JSONXML
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  bamBAM
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  bedBED
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  bedpeBEDPE
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  bedgraphBedGraph
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  bigbedbigBed
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  bigWigbigWig
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  birdsuite-filesBirdsuite-Files
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  broadpeakbroadPeak
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  cbsCBS
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  chemical-reactivity-probing-profilesChemical-Reactivity-Probing-Profiles
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  chrom-sizeschrom-sizes
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  cnCN
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  custom-file-formatsCustom-File-Formats
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  cytobandCytoband
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  fastaFASTA
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  gctGCT
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  cramCRAM
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  genepredgenePred
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  gff-gtfGFF/GTF
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  gisticGISTIC
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  gobyGoby
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  gwasGWAS
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  igvIGV
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  lohLOH
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  maf-multiple-alignment-formatMAF-Multiple Alignment Format
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  maf-mutation-annotation-formatMAF-Mutation-Annotation-Format
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  merged-bam-fileMerged BAM File
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  mutMUT
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  narrowpeaknarrowPeak
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  pslPSL
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  resRES
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  rna-secondary-structure-formatsRNA-Secondary-Structure-Formats
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  samSAM
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  sample-info-attributes-fileSample-Info-Attributes-file
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  segSEG
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  tdfTDF
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  track-lineTrack Line
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  type-lineType Line
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  vcfVCF
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs  wigWIG

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code