Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

ValueSet: Molecular Biomarker Categories (Experimental)

Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-category-vs Version: 3.0.1-SNAPSHOT
Active as of 2024-04-09 Computable Name: MolecularBiomarkerCategoryVS

This value set is drawn from the Molecular Biomarker Ontology code system, which provides codes that characterize a molecular biomarker.

References

Logical Definition (CLD)

 

Expansion

Expansion based on codesystem Molecular Biomarker Ontology Codes v3.0.1-SNAPSHOT (CodeSystem)

This value set contains 17 concepts.

LevelCodeSystemDisplayDefinition
1  _physiologyBiomarkerCategoryhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csMolecular biomarker physiologic role category

A category based on the normal bodily function of the biomarker.

2    antibodyhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csantibody category

Molecular biomarker physiologic role is an antibody.

2    antgenhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csantigen category

Molecular biomarker physiologic role is an antigen.

2    cellReceptorhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cscell receptor category

Molecular biomarker physiologic role is a cell receptor.

2    cellReceptorLigandhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cscell receptor ligand category

Molecular biomarker physiologic role is a cell receptor ligand.

1  _moleculeTypeBiomarkerCategoryhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csMolecular biomarker molecular type category

A category based on the type of biomarker molecule.

2    carbohydratehttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cscarbohydrate category

Molecular biomarker molecule type is a carbohydrate.

2    lipidhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cslipid category

Molecular biomarker molecule type is a lipid.

2    nucleicAcidhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csnucleic acid category

Molecular biomarker molecule type is a nucleic acid.

2    proteinhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csprotein category

Molecular biomarker molecule type is a protein. Includes single or multi-subunit proteins with or without post-translational modifications.

1  _methodBiomarkerCategoryhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csMolecular biomarker method type category

A category based on the measurement ascertainment method of the biomarker. (Methods are drawn from LOINC (https://loinc.org/kb/users-guide/major-parts-of-a-loinc-term/#type-of-method-6th-part) and NCBI Genetic Testing Registry (https://www.ncbi.nlm.nih.gov/gtr/)).

2    enzymeAssayhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csenzyme assay category

Molecular biomarker method is enzyme assay.

2    flowCytometryhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csflow cytometry category

Molecular biomarker method is flow cytometry.

2    immuneStainhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csimmune stain category

Molecular biomarker method is immune stain.

2    immunoassayhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csimmunoassay category

Molecular biomarker method is immunoassay.

2    methylationAnalysishttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csmethylation analysis category

Molecular biomarker method is methylation analysis.

2    molgenhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-csmolecular sequence adjacent category

Molecular biomarker method is molecular sequence adjacent observation.

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code