Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot
Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot
Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
Bundle bundle-complexVariant-nonHGVS of type transaction
Entry 1 - fullUrl = urn:uuid:16fdd5fc-e665-48af-99e4-48d603f3e12d
Request:
POST Observation
Resource Observation:
Generated Narrative: Observation
Resource Observation "Inline-Instance-for-complexVariant-nonHGVS-1"
Profile: Variant
status: FINAL
category: Laboratory (Observation Category Codes#laboratory), Genetics (diagnosticServiceSectionId#GE)
code: Genetic variant assessment (LOINC#69548-6)
subject: See on this page: urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac
effective: 2019-03-05
issued: Mar 5, 2019, 4:04:44 PM
performer: See on this page: urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab
value: Present (LOINC#LA9633-4)
component
code: Transcript ref sequence ID (LOINC#51958-7)
value: NM_022787.3 (Gene Reference Sequence Collection#NM_022787.3)
component
code: Gen allele loc ID (LOINC#81254-5)
value: 769-769
component
code: Genomic ref allele [ID] (LOINC#69547-8)
value: G
component
code: Genomic alt allele [ID] (LOINC#69551-0)
value: A
component
code: Allelic state (LOINC#53034-5)
value: Heterozygous (LOINC#LA6706-1)
Entry 2 - fullUrl = urn:uuid:16fdd5fc-e665-48af-99e4-48d603f3e12e
Request:
POST Observation
Resource Observation:
Generated Narrative: Observation
Resource Observation "Inline-Instance-for-complexVariant-nonHGVS-2"
Profile: Variant
status: FINAL
category: Laboratory (Observation Category Codes#laboratory), Genetics (diagnosticServiceSectionId#GE)
code: Genetic variant assessment (LOINC#69548-6)
subject: See on this page: urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac
effective: 2019-03-05
issued: Mar 5, 2019, 4:04:44 PM
performer: See on this page: urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab
value: Present (LOINC#LA9633-4)
component
code: Transcript ref sequence ID (LOINC#51958-7)
value: NM_022787.3 (Gene Reference Sequence Collection#NM_022787.3)
component
code: Gen allele loc ID (LOINC#81254-5)
value: 53-53
component
code: Genomic ref allele [ID] (LOINC#69547-8)
value: A
component
code: Genomic alt allele [ID] (LOINC#69551-0)
value: G
component
code: Allelic state (LOINC#53034-5)
value: Heterozygous (LOINC#LA6706-1)
Entry 3 - fullUrl = urn:uuid:16fdd5fc-e665-48af-99e4-48d603f3e12a
Request:
POST Observation
Resource Observation:
Generated Narrative: Observation
Resource Observation "Inline-Instance-for-complexVariant-nonHGVS-3"
Profile: Genotype
status: FINAL
category: Laboratory (Observation Category Codes#laboratory), Genetics (diagnosticServiceSectionId#GE)
code: Genotype name Patient (LOINC#84413-4)
subject: See on this page: urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac
effective: 2019-03-05
issued: Mar 5, 2019, 4:04:44 PM
performer: See on this page: urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab
value: NM_022787.3(NMNAT1):c.[53A>G];[769G>A] AND Cone-rod dystrophy (ClinVar Variant ID#RCV000664188.1)
hasMember:
Entry 4 - fullUrl = urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab
Request:
POST Organization
Resource Organization:
Generated Narrative: Organization
Resource Organization "performingLab"
name: aTypingLab Inc
alias: aTL
Contacts
Telecom Address ph: 1-800-555-1234(WORK) 123 Main St, Sometown, ND 99999(work)
Entry 5 - fullUrl = urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac
Request:
POST Patient
Resource Patient:
Anonymous Patient Male, DoB: 1986-12-31
IG © 2022+ HL7 International / Clinical Genomics. Package hl7.fhir.uv.genomics-reporting#3.0.1-SNAPSHOT based on FHIR 4.0.1. Generated 2024-04-09
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