Genomics Reporting Implementation Guide
4.0.0-ballot - STU 4 ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

Extension: Genomic Study Analysis Output

Official URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output Version: 4.0.0-ballot
Standards status: Trial-use Maturity Level: 2 Computable Name: GenomicStudyAnalysisOutput

Genomic Study Analysis Output

Context of Use

    This extension may be used on the following element(s)

Usage info

Usages:

You can also check for usages in the FHIR IG Statistics

Formal Views of Extension Content

Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Genomic Study Analysis Output
... Slices for extension Content/Rules for all slices
.... extension:file 0..1 Extension GenomicStudy.analysis.output.file
..... extension 0..0
..... url 1..1 uri "file"
..... value[x] 0..1 Reference(Genomic Data File) Value of extension
.... extension:type 0..1 Extension GenomicStudy.analysis.output.type
..... extension 0..0
..... url 1..1 uri "type"
..... value[x] 0..1 CodeableConcept bam | bed | vcf | ... (many)
Binding: Genomic Study Data Format ValueSet (preferred)
... url 1..1 uri "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output"
... value[x] 0..0

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Genomic Study Analysis Output
... id 0..1 string Unique id for inter-element referencing
... Slices for extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... extension:file 0..1 Extension GenomicStudy.analysis.output.file
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0
..... url 1..1 uri "file"
..... value[x] 0..1 Reference(Genomic Data File) Value of extension
.... extension:type 0..1 Extension GenomicStudy.analysis.output.type
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0
..... url 1..1 uri "type"
..... value[x] 0..1 CodeableConcept bam | bed | vcf | ... (many)
Binding: Genomic Study Data Format ValueSet (preferred)
... url 1..1 uri "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output"

doco Documentation for this format

This structure is derived from Extension

Summary

Complex Extension: Genomic Study Analysis Output

  • file: Reference: An Extension
  • type: CodeableConcept: An Extension

Maturity: 2

Differential View

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Genomic Study Analysis Output
... Slices for extension Content/Rules for all slices
.... extension:file 0..1 Extension GenomicStudy.analysis.output.file
..... extension 0..0
..... url 1..1 uri "file"
..... value[x] 0..1 Reference(Genomic Data File) Value of extension
.... extension:type 0..1 Extension GenomicStudy.analysis.output.type
..... extension 0..0
..... url 1..1 uri "type"
..... value[x] 0..1 CodeableConcept bam | bed | vcf | ... (many)
Binding: Genomic Study Data Format ValueSet (preferred)
... url 1..1 uri "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output"
... value[x] 0..0

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Genomic Study Analysis Output
... id 0..1 string Unique id for inter-element referencing
... Slices for extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... extension:file 0..1 Extension GenomicStudy.analysis.output.file
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0
..... url 1..1 uri "file"
..... value[x] 0..1 Reference(Genomic Data File) Value of extension
.... extension:type 0..1 Extension GenomicStudy.analysis.output.type
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0
..... url 1..1 uri "type"
..... value[x] 0..1 CodeableConcept bam | bed | vcf | ... (many)
Binding: Genomic Study Data Format ValueSet (preferred)
... url 1..1 uri "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output"

doco Documentation for this format

This structure is derived from Extension

Summary

Complex Extension: Genomic Study Analysis Output

  • file: Reference: An Extension
  • type: CodeableConcept: An Extension

Maturity: 2

 

Other representations of profile: CSV, Excel, Schematron

Terminology Bindings

Path Status Usage ValueSet Version Source
Extension.extension:type.​value[x] Base preferred Genomic Study Data Format ValueSet 📦4.0.0-ballot This IG

Constraints

Id Grade Path(s) Description Expression
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()