Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-method-type-vs | Version: 4.0.0-ballot | |||
| Standards status: Trial-use | Maturity Level: 2 | Computable Name: GenomicStudyMethodTypeVS | ||
Backport of http://hl7.org/fhir/ValueSet/genomicstudy-methodtype
References
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs version 📦4.0.0-ballot
Expansion performed internally based on codesystem Genomic Study Method Type CodeSystem v4.0.0-ballot (CodeSystem)
This value set contains 81 concepts
| System | Code | Display (en) | JSON | XML |
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | biochemical-genetics | Biochemical Genetics | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | cytogenetics | Cytogenetics | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | molecular-genetics | Molecular Genetics | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | analyte | Analyte | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | chromosome-breakage-studies | Chromosome breakage studies | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | deletion-duplication-analysis | Deletion/duplication analysis | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | detection-of-homozygosity | Detection of homozygosity | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | enzyme-assay | Enzyme assay | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | fish-interphase | FISH-interphase | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | fish-metaphase | FISH-metaphase | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | flow-cytometry | Flow cytometry | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | fish | Fluorescence in situ hybridization (FISH) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | immunohistochemistry | Immunohistochemistry | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | karyotyping | Karyotyping | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | linkage-analysis | Linkage analysis | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | methylation-analysis | Methylation analysis | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | msi | Microsatellite instability testing (MSI) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | m-fish | Multicolor FISH (M-FISH) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | mutation-scanning-of-select-exons | Mutation scanning of select exons | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | mutation-scanning-of-the-entire-coding-region | Mutation scanning of the entire coding region | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | protein-analysis | Protein analysis | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | protein-expression | Protein expression | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | rna-analysis | RNA analysis | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | sequence-analysis-of-select-exons | Sequence analysis of select exons | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | sequence-analysis-of-the-entire-coding-region | Sequence analysis of the entire coding region | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | sister-chromatid-exchange | Sister chromatid exchange | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | targeted-variant-analysis | Targeted variant analysis | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | udp | Uniparental disomy study (UPD) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | aspe | Allele-specific primer extension (ASPE) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | alternative-splicing-detection | Alternative splicing detection | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | bi-directional-sanger-sequence-analysis | Bi-directional Sanger Sequence Analysis | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | c-banding | C-banding | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | cia | Chemiluminescent Immunoassay (CIA) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | chromatin-immunoprecipitation-on-chip | Chromatin Immunoprecipitation on ChIP | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | comparative-genomic-hybridization | Comparative Genomic Hybridization | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | damid | DamID | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | digital-virtual-karyotyping | Digital / Virtual karyotyping | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | digital-microfluidic-microspheres | Digital microfluidic microspheres | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | enzymatic-levels | Enzymatic levels | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | enzyme-activity | Enzyme activity | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | elisa | Enzyme-Linked Immunosorbent Assays (ELISA) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | fluorometry | Fluorometry | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | fusion-genes-microarrays | Fusion genes microarrays | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | g-banding | G-banding | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | gc-ms | Gas chromatographymass spectrometry (GC-MS) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | gene-expression-profiling | Gene expression profiling | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | gene-id | GeneID | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | gold-nanoparticle-probe-technology | Gold nanoparticle probe technology | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | hplc | High-performance liquid chromatography (HPLC) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | lc-ms | Liquid chromatography mass spectrometry (LC-MS) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | lc-ms-ms | Liquid chromatography-tandem mass spectrometry (LC-MS/MS) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | metabolite-levels | Metabolite levels | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | methylation-specific-pcr | Methylation-specific PCR | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | microarray | Microarray | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | mlpa | Multiplex Ligation-dependent Probe Amplification (MLPA) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | ngs-mps | Next-Generation (NGS)/Massively parallel sequencing (MPS) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | ola | Oligonucleotide Ligation Assay (OLA) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | oligonucleotide-hybridization-based-dna-sequencing | Oligonucleotide hybridization-based DNA sequencing | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | other | Other | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | pcr | PCR | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | pcr-with-allele-specific-hybridization | PCR with allele specific hybridization | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | pcr-rflp-with-southern-hybridization | PCR-RFLP with Southern hybridization | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | protein-truncation-test | Protein truncation test | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | pyrosequencing | Pyrosequencing | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | q-banding | Q-banding | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | qpcr | Quantitative PCR (qPCR) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | r-banding | R-banding | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | rflp | RFLP | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | rt-lamp | RT-LAMP | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | rt-pcr | RT-PCR | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | rt-pcr-with-gel-analysis | RT-PCR with gel analysis | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | rt-qpcr | RT-qPCR | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | snp-detection | SNP Detection | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | silver-staining | Silver staining | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | sky | Spectral karyotyping (SKY) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | t-banding | T-banding | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | ms-ms | Tandem mass spectrometry (MS/MS) | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | tetra-nucleotide-repeat-by-pcr-or-southern-blot | Tetra-nucleotide repeat by PCR or Southern Blot | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | tiling-arrays | Tiling Arrays | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | trinucleotide-repeat-by-pcr-or-southern-blot | Trinucleotide repeat by PCR or Southern Blot | ||
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs | uni-directional-sanger-sequencing | Uni-directional Sanger sequencing |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |