Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
Official URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input | Version: 3.0.0 | |||
Active as of 2024-11-24 | Computable Name: GenomicStudyAnalysisInput |
Genomic Study Analysis Input
Context of Use
This extension may be used on the following element(s):
Usage info
Usage:
Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.
This structure is derived from Extension
This structure is derived from Extension
Name | Flags | Card. | Type | Description & Constraints |
---|---|---|---|---|
Extension | 0..* | Extension | Genomic Study Analysis Input | |
Slices for extension | Content/Rules for all slices | |||
extension:file | 0..1 | Extension | GenomicStudy.analysis.input.file | |
extension | 0..0 | |||
url | 1..1 | uri | "file" | |
value[x] | 0..1 | Reference(Genomic Data File) | Value of extension | |
extension:type | 0..1 | Extension | GenomicStudy.analysis.input.type | |
extension | 0..0 | |||
url | 1..1 | uri | "type" | |
value[x] | 0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
extension:generatedBy | 0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
extension | 0..0 | |||
url | 1..1 | uri | "generatedBy" | |
value[x] | 0..1 | Value of extension | ||
valueIdentifier | Identifier | |||
valueReference | Reference(Genomic Study) | |||
url | 1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
value[x] | 0..0 | |||
Documentation for this format |
Name | Flags | Card. | Type | Description & Constraints |
---|---|---|---|---|
Extension | 0..* | Extension | Genomic Study Analysis Input | |
id | 0..1 | string | Unique id for inter-element referencing | |
Slices for extension | 0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |
extension:file | 0..1 | Extension | GenomicStudy.analysis.input.file | |
id | 0..1 | string | Unique id for inter-element referencing | |
extension | 0..0 | |||
url | 1..1 | uri | "file" | |
value[x] | 0..1 | Reference(Genomic Data File) | Value of extension | |
extension:type | 0..1 | Extension | GenomicStudy.analysis.input.type | |
id | 0..1 | string | Unique id for inter-element referencing | |
extension | 0..0 | |||
url | 1..1 | uri | "type" | |
value[x] | 0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
extension:generatedBy | 0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
id | 0..1 | string | Unique id for inter-element referencing | |
extension | 0..0 | |||
url | 1..1 | uri | "generatedBy" | |
value[x] | 0..1 | Value of extension | ||
valueIdentifier | Identifier | |||
valueReference | Reference(Genomic Study) | |||
url | 1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
Documentation for this format |
This structure is derived from Extension
Differential View
This structure is derived from Extension
Name | Flags | Card. | Type | Description & Constraints |
---|---|---|---|---|
Extension | 0..* | Extension | Genomic Study Analysis Input | |
Slices for extension | Content/Rules for all slices | |||
extension:file | 0..1 | Extension | GenomicStudy.analysis.input.file | |
extension | 0..0 | |||
url | 1..1 | uri | "file" | |
value[x] | 0..1 | Reference(Genomic Data File) | Value of extension | |
extension:type | 0..1 | Extension | GenomicStudy.analysis.input.type | |
extension | 0..0 | |||
url | 1..1 | uri | "type" | |
value[x] | 0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
extension:generatedBy | 0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
extension | 0..0 | |||
url | 1..1 | uri | "generatedBy" | |
value[x] | 0..1 | Value of extension | ||
valueIdentifier | Identifier | |||
valueReference | Reference(Genomic Study) | |||
url | 1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
value[x] | 0..0 | |||
Documentation for this format |
Snapshot View
Name | Flags | Card. | Type | Description & Constraints |
---|---|---|---|---|
Extension | 0..* | Extension | Genomic Study Analysis Input | |
id | 0..1 | string | Unique id for inter-element referencing | |
Slices for extension | 0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |
extension:file | 0..1 | Extension | GenomicStudy.analysis.input.file | |
id | 0..1 | string | Unique id for inter-element referencing | |
extension | 0..0 | |||
url | 1..1 | uri | "file" | |
value[x] | 0..1 | Reference(Genomic Data File) | Value of extension | |
extension:type | 0..1 | Extension | GenomicStudy.analysis.input.type | |
id | 0..1 | string | Unique id for inter-element referencing | |
extension | 0..0 | |||
url | 1..1 | uri | "type" | |
value[x] | 0..1 | CodeableConcept | bam | bed | vcf | ... (many) Binding: Genomic Study Data Format ValueSet (preferred) | |
extension:generatedBy | 0..1 | Extension | GenomicStudy.analysis.input.generatedBy | |
id | 0..1 | string | Unique id for inter-element referencing | |
extension | 0..0 | |||
url | 1..1 | uri | "generatedBy" | |
value[x] | 0..1 | Value of extension | ||
valueIdentifier | Identifier | |||
valueReference | Reference(Genomic Study) | |||
url | 1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input" | |
Documentation for this format |
Other representations of profile: CSV, Excel, Schematron
Path | Conformance | ValueSet | URI |
Extension.extension:type.value[x] | preferred | GenomicStudyDataFormatVS (a valid code from Genomic Study Data Format CodeSystem)http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-data-format-vs from this IG |
Id | Grade | Path(s) | Details | Requirements |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |