Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

CodeSystem: Variant Confidence Status Codes

Official URL: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs Version: 3.0.1-SNAPSHOT
Active as of 2024-07-15 Computable Name: VariantConfidenceStatusCS

A code that represents the confidence of a true positive variant call.

This Code system is referenced in the content logical definition of the following value sets:

Generated Narrative: CodeSystem variant-confidence-status-cs

This case-sensitive code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs defines the following codes:

CodeDisplayDefinition
high High High confidence true positive variant call. Suitable for clinical reporting.
intermediate Intermediate Candidate true positive variant call. Unable to confirm without additional testing.
low Low High confidence false positive variant call.