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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

CodeSystem: Microbiology component codes (Experimental)

Official URL: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs Version: 0.1.0-ci-build
Draft as of 2026-08-11 Computable Name: MicrobiologyCS

Local codes for microbiology panel Observation components.

This Code system is referenced in the content logical definition of the following value sets:

  • This CodeSystem is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)

This case-insensitive code system https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs defines the following codes:

CodeDisplayDefinition
microbiology-panel Microbiology studies panel Panel grouping microbiology and virology results for a visit.
ebv-dna EBV-DNA (quantitative) Epstein-Barr virus DNA detected/quantified by PCR.
ebv-igm-anti-ea EBV IgM anti-EA EBV IgM antibody to early antigen (EA).
ebv-igm-anti-vca EBV IgM anti-VCA EBV IgM antibody to viral capsid antigen (VCA).
ebv-igg-anti-vca EBV IgG anti-VCA EBV IgG antibody to viral capsid antigen (VCA).
ebv-igg-ebna EBV IgG EBNA EBV IgG antibody to Epstein-Barr nuclear antigen (EBNA).
cmv-dna CMV-DNA Cytomegalovirus DNA detected/quantified by PCR.
cmv-igm CMV IgM Cytomegalovirus IgM antibody.
cmv-igg CMV IgG Cytomegalovirus IgG antibody.
parvovirus-b19-dna Parvovirus B19 DNA Parvovirus B19 DNA detected by PCR.
parvovirus-b19-igg Parvovirus B19 IgG Parvovirus B19 IgG antibody.
parvovirus-b19-igm Parvovirus B19 IgM Parvovirus B19 IgM antibody.
hsv-igg HSV IgG Herpes simplex virus IgG antibody.
hsv-igm HSV IgM Herpes simplex virus IgM antibody.
adenovirus-igg Adenovirus IgG Adenovirus IgG antibody.
adenovirus-igm Adenovirus IgM Adenovirus IgM antibody.
vzv-igg VZV IgG Varicella-zoster virus IgG antibody.
vzv-igm VZV IgM Varicella-zoster virus IgM antibody.
blood-bkv-dna Blood BKV-DNA BK polyomavirus DNA in blood by PCR.
urine-bkv-dna Urine BKV-DNA BK polyomavirus DNA in urine by PCR.
bkv-dna-kidney-biopsy BKV-DNA on kidney biopsy BK polyomavirus DNA detected in kidney biopsy tissue.
bkv-fish-kidney-biopsy BKV FISH on kidney biopsy BK polyomavirus detected by FISH in kidney biopsy tissue.
ebv-dna-copies EBV-DNA copies/ml Quantitative EBV DNA viral load (copies/mL).
cmv-dna-copies CMV-DNA copies/ml Quantitative CMV DNA viral load (copies/mL).
parvovirus-b19-dna-copies Parvovirus B19 DNA copies/ml Quantitative parvovirus B19 DNA viral load (copies/mL).
blood-adenovirus-dna Blood Adenovirus DNA Adenovirus DNA in blood by PCR.
blood-adenovirus-dna-copies Blood Adenovirus DNA copies/ml Quantitative blood adenovirus DNA viral load (copies/mL).
blood-bkv-dna-copies Blood BKV-DNA copies/ml Quantitative blood BK virus DNA viral load (copies/mL).
blood-colture Blood culture Blood culture for microbial growth.
urine-colture Urine culture Urine culture for microbial growth.
other-positivity Other positivity Other microbiological positivity not otherwise specified.
ebv-hepatitis-liver EBV Hepatitis on liver EBV-associated hepatitis involving the liver allograft.
evidence-bkvan Histological evidence of BKVAN Histological evidence of BK virus-associated nephropathy (BKVAN).