PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

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: Microbiology component codes - XML Representation

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<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="microbiology-cs"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem microbiology-cs</b></p><a name="microbiology-cs"> </a><a name="hcmicrobiology-cs"> </a><p>This case-insensitive code system <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style="white-space:nowrap">microbiology-panel<a name="microbiology-cs-microbiology-panel"> </a></td><td>Microbiology studies panel</td><td>Panel grouping microbiology and virology results for a visit.</td></tr><tr><td style="white-space:nowrap">ebv-dna<a name="microbiology-cs-ebv-dna"> </a></td><td>EBV-DNA (quantitative)</td><td>Epstein-Barr virus DNA detected/quantified by PCR.</td></tr><tr><td style="white-space:nowrap">ebv-igm-anti-ea<a name="microbiology-cs-ebv-igm-anti-ea"> </a></td><td>EBV IgM anti-EA</td><td>EBV IgM antibody to early antigen (EA).</td></tr><tr><td style="white-space:nowrap">ebv-igm-anti-vca<a name="microbiology-cs-ebv-igm-anti-vca"> </a></td><td>EBV IgM anti-VCA</td><td>EBV IgM antibody to viral capsid antigen (VCA).</td></tr><tr><td style="white-space:nowrap">ebv-igg-anti-vca<a name="microbiology-cs-ebv-igg-anti-vca"> </a></td><td>EBV IgG anti-VCA</td><td>EBV IgG antibody to viral capsid antigen (VCA).</td></tr><tr><td style="white-space:nowrap">ebv-igg-ebna<a name="microbiology-cs-ebv-igg-ebna"> </a></td><td>EBV IgG EBNA</td><td>EBV IgG antibody to Epstein-Barr nuclear antigen (EBNA).</td></tr><tr><td style="white-space:nowrap">cmv-dna<a name="microbiology-cs-cmv-dna"> </a></td><td>CMV-DNA</td><td>Cytomegalovirus DNA detected/quantified by PCR.</td></tr><tr><td style="white-space:nowrap">cmv-igm<a name="microbiology-cs-cmv-igm"> </a></td><td>CMV IgM</td><td>Cytomegalovirus IgM antibody.</td></tr><tr><td style="white-space:nowrap">cmv-igg<a name="microbiology-cs-cmv-igg"> </a></td><td>CMV IgG</td><td>Cytomegalovirus IgG antibody.</td></tr><tr><td style="white-space:nowrap">parvovirus-b19-dna<a name="microbiology-cs-parvovirus-b19-dna"> </a></td><td>Parvovirus B19 DNA</td><td>Parvovirus B19 DNA detected by PCR.</td></tr><tr><td style="white-space:nowrap">parvovirus-b19-igg<a name="microbiology-cs-parvovirus-b19-igg"> </a></td><td>Parvovirus B19 IgG</td><td>Parvovirus B19 IgG antibody.</td></tr><tr><td style="white-space:nowrap">parvovirus-b19-igm<a name="microbiology-cs-parvovirus-b19-igm"> </a></td><td>Parvovirus B19 IgM</td><td>Parvovirus B19 IgM antibody.</td></tr><tr><td style="white-space:nowrap">hsv-igg<a name="microbiology-cs-hsv-igg"> </a></td><td>HSV IgG</td><td>Herpes simplex virus IgG antibody.</td></tr><tr><td style="white-space:nowrap">hsv-igm<a name="microbiology-cs-hsv-igm"> </a></td><td>HSV IgM</td><td>Herpes simplex virus IgM antibody.</td></tr><tr><td style="white-space:nowrap">adenovirus-igg<a name="microbiology-cs-adenovirus-igg"> </a></td><td>Adenovirus IgG</td><td>Adenovirus IgG antibody.</td></tr><tr><td style="white-space:nowrap">adenovirus-igm<a name="microbiology-cs-adenovirus-igm"> </a></td><td>Adenovirus IgM</td><td>Adenovirus IgM antibody.</td></tr><tr><td style="white-space:nowrap">vzv-igg<a name="microbiology-cs-vzv-igg"> </a></td><td>VZV IgG</td><td>Varicella-zoster virus IgG antibody.</td></tr><tr><td style="white-space:nowrap">vzv-igm<a name="microbiology-cs-vzv-igm"> </a></td><td>VZV IgM</td><td>Varicella-zoster virus IgM antibody.</td></tr><tr><td style="white-space:nowrap">blood-bkv-dna<a name="microbiology-cs-blood-bkv-dna"> </a></td><td>Blood BKV-DNA</td><td>BK polyomavirus DNA in blood by PCR.</td></tr><tr><td style="white-space:nowrap">urine-bkv-dna<a name="microbiology-cs-urine-bkv-dna"> </a></td><td>Urine BKV-DNA</td><td>BK polyomavirus DNA in urine by PCR.</td></tr><tr><td style="white-space:nowrap">bkv-dna-kidney-biopsy<a name="microbiology-cs-bkv-dna-kidney-biopsy"> </a></td><td>BKV-DNA on kidney biopsy</td><td>BK polyomavirus DNA detected in kidney biopsy tissue.</td></tr><tr><td style="white-space:nowrap">bkv-fish-kidney-biopsy<a name="microbiology-cs-bkv-fish-kidney-biopsy"> </a></td><td>BKV FISH on kidney biopsy</td><td>BK polyomavirus detected by FISH in kidney biopsy tissue.</td></tr><tr><td style="white-space:nowrap">ebv-dna-copies<a name="microbiology-cs-ebv-dna-copies"> </a></td><td>EBV-DNA copies/ml</td><td>Quantitative EBV DNA viral load (copies/mL).</td></tr><tr><td style="white-space:nowrap">cmv-dna-copies<a name="microbiology-cs-cmv-dna-copies"> </a></td><td>CMV-DNA copies/ml</td><td>Quantitative CMV DNA viral load (copies/mL).</td></tr><tr><td style="white-space:nowrap">parvovirus-b19-dna-copies<a name="microbiology-cs-parvovirus-b19-dna-copies"> </a></td><td>Parvovirus B19 DNA copies/ml</td><td>Quantitative parvovirus B19 DNA viral load (copies/mL).</td></tr><tr><td style="white-space:nowrap">blood-adenovirus-dna<a name="microbiology-cs-blood-adenovirus-dna"> </a></td><td>Blood Adenovirus DNA</td><td>Adenovirus DNA in blood by PCR.</td></tr><tr><td style="white-space:nowrap">blood-adenovirus-dna-copies<a name="microbiology-cs-blood-adenovirus-dna-copies"> </a></td><td>Blood Adenovirus DNA copies/ml</td><td>Quantitative blood adenovirus DNA viral load (copies/mL).</td></tr><tr><td style="white-space:nowrap">blood-bkv-dna-copies<a name="microbiology-cs-blood-bkv-dna-copies"> </a></td><td>Blood BKV-DNA copies/ml</td><td>Quantitative blood BK virus DNA viral load (copies/mL).</td></tr><tr><td style="white-space:nowrap">blood-colture<a name="microbiology-cs-blood-colture"> </a></td><td>Blood culture</td><td>Blood culture for microbial growth.</td></tr><tr><td style="white-space:nowrap">urine-colture<a name="microbiology-cs-urine-colture"> </a></td><td>Urine culture</td><td>Urine culture for microbial growth.</td></tr><tr><td style="white-space:nowrap">other-positivity<a name="microbiology-cs-other-positivity"> </a></td><td>Other positivity</td><td>Other microbiological positivity not otherwise specified.</td></tr><tr><td style="white-space:nowrap">ebv-hepatitis-liver<a name="microbiology-cs-ebv-hepatitis-liver"> </a></td><td>EBV Hepatitis on liver</td><td>EBV-associated hepatitis involving the liver allograft.</td></tr><tr><td style="white-space:nowrap">evidence-bkvan<a name="microbiology-cs-evidence-bkvan"> </a></td><td>Histological evidence of BKVAN</td><td>Histological evidence of BK virus-associated nephropathy (BKVAN).</td></tr></table></div>
  </text>
  <url
       value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs"/>
  <version value="0.1.0-ci-build"/>
  <name value="MicrobiologyCS"/>
  <title value="Microbiology component codes"/>
  <status value="draft"/>
  <experimental value="true"/>
  <date value="2026-08-11T12:50:29+00:00"/>
  <publisher value="Protect Child"/>
  <contact>
    <name value="Protect Child"/>
    <telecom>
      <system value="url"/>
      <value value="https://protect-child.eu/"/>
    </telecom>
  </contact>
  <description
               value="Local codes for microbiology panel Observation components."/>
  <caseSensitive value="false"/>
  <content value="complete"/>
  <count value="33"/>
  <concept>
    <code value="microbiology-panel"/>
    <display value="Microbiology studies panel"/>
    <definition
                value="Panel grouping microbiology and virology results for a visit."/>
  </concept>
  <concept>
    <code value="ebv-dna"/>
    <display value="EBV-DNA (quantitative)"/>
    <definition value="Epstein-Barr virus DNA detected/quantified by PCR."/>
  </concept>
  <concept>
    <code value="ebv-igm-anti-ea"/>
    <display value="EBV IgM anti-EA"/>
    <definition value="EBV IgM antibody to early antigen (EA)."/>
  </concept>
  <concept>
    <code value="ebv-igm-anti-vca"/>
    <display value="EBV IgM anti-VCA"/>
    <definition value="EBV IgM antibody to viral capsid antigen (VCA)."/>
  </concept>
  <concept>
    <code value="ebv-igg-anti-vca"/>
    <display value="EBV IgG anti-VCA"/>
    <definition value="EBV IgG antibody to viral capsid antigen (VCA)."/>
  </concept>
  <concept>
    <code value="ebv-igg-ebna"/>
    <display value="EBV IgG EBNA"/>
    <definition
                value="EBV IgG antibody to Epstein-Barr nuclear antigen (EBNA)."/>
  </concept>
  <concept>
    <code value="cmv-dna"/>
    <display value="CMV-DNA"/>
    <definition value="Cytomegalovirus DNA detected/quantified by PCR."/>
  </concept>
  <concept>
    <code value="cmv-igm"/>
    <display value="CMV IgM"/>
    <definition value="Cytomegalovirus IgM antibody."/>
  </concept>
  <concept>
    <code value="cmv-igg"/>
    <display value="CMV IgG"/>
    <definition value="Cytomegalovirus IgG antibody."/>
  </concept>
  <concept>
    <code value="parvovirus-b19-dna"/>
    <display value="Parvovirus B19 DNA"/>
    <definition value="Parvovirus B19 DNA detected by PCR."/>
  </concept>
  <concept>
    <code value="parvovirus-b19-igg"/>
    <display value="Parvovirus B19 IgG"/>
    <definition value="Parvovirus B19 IgG antibody."/>
  </concept>
  <concept>
    <code value="parvovirus-b19-igm"/>
    <display value="Parvovirus B19 IgM"/>
    <definition value="Parvovirus B19 IgM antibody."/>
  </concept>
  <concept>
    <code value="hsv-igg"/>
    <display value="HSV IgG"/>
    <definition value="Herpes simplex virus IgG antibody."/>
  </concept>
  <concept>
    <code value="hsv-igm"/>
    <display value="HSV IgM"/>
    <definition value="Herpes simplex virus IgM antibody."/>
  </concept>
  <concept>
    <code value="adenovirus-igg"/>
    <display value="Adenovirus IgG"/>
    <definition value="Adenovirus IgG antibody."/>
  </concept>
  <concept>
    <code value="adenovirus-igm"/>
    <display value="Adenovirus IgM"/>
    <definition value="Adenovirus IgM antibody."/>
  </concept>
  <concept>
    <code value="vzv-igg"/>
    <display value="VZV IgG"/>
    <definition value="Varicella-zoster virus IgG antibody."/>
  </concept>
  <concept>
    <code value="vzv-igm"/>
    <display value="VZV IgM"/>
    <definition value="Varicella-zoster virus IgM antibody."/>
  </concept>
  <concept>
    <code value="blood-bkv-dna"/>
    <display value="Blood BKV-DNA"/>
    <definition value="BK polyomavirus DNA in blood by PCR."/>
  </concept>
  <concept>
    <code value="urine-bkv-dna"/>
    <display value="Urine BKV-DNA"/>
    <definition value="BK polyomavirus DNA in urine by PCR."/>
  </concept>
  <concept>
    <code value="bkv-dna-kidney-biopsy"/>
    <display value="BKV-DNA on kidney biopsy"/>
    <definition
                value="BK polyomavirus DNA detected in kidney biopsy tissue."/>
  </concept>
  <concept>
    <code value="bkv-fish-kidney-biopsy"/>
    <display value="BKV FISH on kidney biopsy"/>
    <definition
                value="BK polyomavirus detected by FISH in kidney biopsy tissue."/>
  </concept>
  <concept>
    <code value="ebv-dna-copies"/>
    <display value="EBV-DNA copies/ml"/>
    <definition value="Quantitative EBV DNA viral load (copies/mL)."/>
  </concept>
  <concept>
    <code value="cmv-dna-copies"/>
    <display value="CMV-DNA copies/ml"/>
    <definition value="Quantitative CMV DNA viral load (copies/mL)."/>
  </concept>
  <concept>
    <code value="parvovirus-b19-dna-copies"/>
    <display value="Parvovirus B19 DNA copies/ml"/>
    <definition
                value="Quantitative parvovirus B19 DNA viral load (copies/mL)."/>
  </concept>
  <concept>
    <code value="blood-adenovirus-dna"/>
    <display value="Blood Adenovirus DNA"/>
    <definition value="Adenovirus DNA in blood by PCR."/>
  </concept>
  <concept>
    <code value="blood-adenovirus-dna-copies"/>
    <display value="Blood Adenovirus DNA copies/ml"/>
    <definition
                value="Quantitative blood adenovirus DNA viral load (copies/mL)."/>
  </concept>
  <concept>
    <code value="blood-bkv-dna-copies"/>
    <display value="Blood BKV-DNA copies/ml"/>
    <definition
                value="Quantitative blood BK virus DNA viral load (copies/mL)."/>
  </concept>
  <concept>
    <code value="blood-colture"/>
    <display value="Blood culture"/>
    <definition value="Blood culture for microbial growth."/>
  </concept>
  <concept>
    <code value="urine-colture"/>
    <display value="Urine culture"/>
    <definition value="Urine culture for microbial growth."/>
  </concept>
  <concept>
    <code value="other-positivity"/>
    <display value="Other positivity"/>
    <definition
                value="Other microbiological positivity not otherwise specified."/>
  </concept>
  <concept>
    <code value="ebv-hepatitis-liver"/>
    <display value="EBV Hepatitis on liver"/>
    <definition
                value="EBV-associated hepatitis involving the liver allograft."/>
  </concept>
  <concept>
    <code value="evidence-bkvan"/>
    <display value="Histological evidence of BKVAN"/>
    <definition
                value="Histological evidence of BK virus-associated nephropathy (BKVAN)."/>
  </concept>
</CodeSystem>