PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
Primary profile: Microbiology (Observation panel)
Cardinality key — M = Mandatory (1..1) · R = Recommended (0..1) · O = Optional (0..1)
All result fields map to Observation.component slices coded by MicrobiologyCS. Boolean components use valueBoolean (true = Positive / detected); quantitative (viral load) components use valueQuantity (UCUM {copies}/mL); coded components use valueCodeableConcept; free-text fields use valueString.
| DM field | Card. | FHIR path | Notes |
|---|---|---|---|
| microbiology_id | M | Observation.identifier.value |
|
| visit_id | M | Observation.encounter |
Reference(Visit) |
| donor_id | O | Observation.focus |
Reference(Donor); for donor-derived / pre-transplant serology |
| ebv_dna | R | Observation.component[ebvDna].valueBoolean |
MicrobiologyCS#ebv-dna; true = Positive |
| ebv_dna_copies | R | Observation.component[ebvDnaCopies].valueQuantity |
MicrobiologyCS#ebv-dna-copies; UCUM {copies}/mL |
| ebv_igm_anti_ea | R | Observation.component[ebvIgmAntiEa].valueBoolean |
MicrobiologyCS#ebv-igm-anti-ea |
| ebv_igm_anti_vca | R | Observation.component[ebvIgmAntiVca].valueBoolean |
MicrobiologyCS#ebv-igm-anti-vca |
| ebv_igg_anti_vca | R | Observation.component[ebvIggAntiVca].valueBoolean |
MicrobiologyCS#ebv-igg-anti-vca |
| ebv_igg_ebna | R | Observation.component[ebvIggEbna].valueBoolean |
MicrobiologyCS#ebv-igg-ebna |
| cmv_dna | R | Observation.component[cmvDna].valueBoolean |
MicrobiologyCS#cmv-dna |
| cmv_dna_copies | R | Observation.component[cmvDnaCopies].valueQuantity |
MicrobiologyCS#cmv-dna-copies; UCUM {copies}/mL |
| cmv_igm | R | Observation.component[cmvIgm].valueBoolean |
MicrobiologyCS#cmv-igm |
| cmv_igg | R | Observation.component[cmvIgg].valueBoolean |
MicrobiologyCS#cmv-igg |
| parvovirus_b19_dna | R | Observation.component[parvoB19Dna].valueBoolean |
MicrobiologyCS#parvovirus-b19-dna |
| parvovirus_b19_dna_copies | R | Observation.component[parvoB19DnaCopies].valueQuantity |
MicrobiologyCS#parvovirus-b19-dna-copies; UCUM {copies}/mL |
| parvovirus_b19_igg | R | Observation.component[parvoB19Igg].valueBoolean |
MicrobiologyCS#parvovirus-b19-igg |
| parvovirus_b19_igm | R | Observation.component[parvoB19Igm].valueBoolean |
MicrobiologyCS#parvovirus-b19-igm |
| hsv_igg | R | Observation.component[hsvIgg].valueBoolean |
MicrobiologyCS#hsv-igg |
| hsv_igm | R | Observation.component[hsvIgm].valueBoolean |
MicrobiologyCS#hsv-igm |
| adenovirus_igg | R | Observation.component[adenovirusIgg].valueBoolean |
MicrobiologyCS#adenovirus-igg |
| adenovirus_igm | R | Observation.component[adenovirusIgm].valueBoolean |
MicrobiologyCS#adenovirus-igm |
| blood_adenovirus_dna | R | Observation.component[bloodAdenovirusDna].valueBoolean |
MicrobiologyCS#blood-adenovirus-dna |
| blood_adenovirus_dna_copies | R | Observation.component[bloodAdenovirusDnaCopies].valueQuantity |
MicrobiologyCS#blood-adenovirus-dna-copies; UCUM {copies}/mL |
| vzv_igg | R | Observation.component[vzvIgg].valueBoolean |
MicrobiologyCS#vzv-igg |
| vzv_igm | R | Observation.component[vzvIgm].valueBoolean |
MicrobiologyCS#vzv-igm |
| blood_bkv_dna | R | Observation.component[bloodBkvDna].valueBoolean |
MicrobiologyCS#blood-bkv-dna |
| blood_bkv_dna_copies | R | Observation.component[bloodBkvDnaCopies].valueQuantity |
MicrobiologyCS#blood-bkv-dna-copies; UCUM {copies}/mL |
| urine_bkv_dna | R | Observation.component[urineBkvDna].valueBoolean |
MicrobiologyCS#urine-bkv-dna |
| bkv_dna_kidney_biopsy | R | Observation.component[bkvDnaKidneyBiopsy].valueBoolean |
MicrobiologyCS#bkv-dna-kidney-biopsy; Kidney only |
| bkv_fish_kidney_biopsy | R | Observation.component[bkvFishKidneyBiopsy].valueBoolean |
MicrobiologyCS#bkv-fish-kidney-biopsy; Kidney only |
| blood_colture | R | Observation.component[bloodColture].valueBoolean |
MicrobiologyCS#blood-colture; Kidney only |
| urine_colture | R | Observation.component[urineColture].valueBoolean |
MicrobiologyCS#urine-colture; Kidney only |
| other_positivity | R | Observation.component[otherPositivity].valueString |
MicrobiologyCS#other-positivity; free text; Kidney only |
| ebv_hepatitis_liver | R | Observation.component[ebvHepatitisLiver].valueBoolean |
MicrobiologyCS#ebv-hepatitis-liver; Liver only |
| evidence_bkvan | R | Observation.component[evidenceBkvan].valueCodeableConcept |
MicrobiologyCS#evidence-bkvan; No / Yes / Unknown |