PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-08-11 |
{
"resourceType" : "CodeSystem",
"id" : "microbiology-cs",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem microbiology-cs</b></p><a name=\"microbiology-cs\"> </a><a name=\"hcmicrobiology-cs\"> </a><p>This case-insensitive code system <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">microbiology-panel<a name=\"microbiology-cs-microbiology-panel\"> </a></td><td>Microbiology studies panel</td><td>Panel grouping microbiology and virology results for a visit.</td></tr><tr><td style=\"white-space:nowrap\">ebv-dna<a name=\"microbiology-cs-ebv-dna\"> </a></td><td>EBV-DNA (quantitative)</td><td>Epstein-Barr virus DNA detected/quantified by PCR.</td></tr><tr><td style=\"white-space:nowrap\">ebv-igm-anti-ea<a name=\"microbiology-cs-ebv-igm-anti-ea\"> </a></td><td>EBV IgM anti-EA</td><td>EBV IgM antibody to early antigen (EA).</td></tr><tr><td style=\"white-space:nowrap\">ebv-igm-anti-vca<a name=\"microbiology-cs-ebv-igm-anti-vca\"> </a></td><td>EBV IgM anti-VCA</td><td>EBV IgM antibody to viral capsid antigen (VCA).</td></tr><tr><td style=\"white-space:nowrap\">ebv-igg-anti-vca<a name=\"microbiology-cs-ebv-igg-anti-vca\"> </a></td><td>EBV IgG anti-VCA</td><td>EBV IgG antibody to viral capsid antigen (VCA).</td></tr><tr><td style=\"white-space:nowrap\">ebv-igg-ebna<a name=\"microbiology-cs-ebv-igg-ebna\"> </a></td><td>EBV IgG EBNA</td><td>EBV IgG antibody to Epstein-Barr nuclear antigen (EBNA).</td></tr><tr><td style=\"white-space:nowrap\">cmv-dna<a name=\"microbiology-cs-cmv-dna\"> </a></td><td>CMV-DNA</td><td>Cytomegalovirus DNA detected/quantified by PCR.</td></tr><tr><td style=\"white-space:nowrap\">cmv-igm<a name=\"microbiology-cs-cmv-igm\"> </a></td><td>CMV IgM</td><td>Cytomegalovirus IgM antibody.</td></tr><tr><td style=\"white-space:nowrap\">cmv-igg<a name=\"microbiology-cs-cmv-igg\"> </a></td><td>CMV IgG</td><td>Cytomegalovirus IgG antibody.</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-dna<a name=\"microbiology-cs-parvovirus-b19-dna\"> </a></td><td>Parvovirus B19 DNA</td><td>Parvovirus B19 DNA detected by PCR.</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-igg<a name=\"microbiology-cs-parvovirus-b19-igg\"> </a></td><td>Parvovirus B19 IgG</td><td>Parvovirus B19 IgG antibody.</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-igm<a name=\"microbiology-cs-parvovirus-b19-igm\"> </a></td><td>Parvovirus B19 IgM</td><td>Parvovirus B19 IgM antibody.</td></tr><tr><td style=\"white-space:nowrap\">hsv-igg<a name=\"microbiology-cs-hsv-igg\"> </a></td><td>HSV IgG</td><td>Herpes simplex virus IgG antibody.</td></tr><tr><td style=\"white-space:nowrap\">hsv-igm<a name=\"microbiology-cs-hsv-igm\"> </a></td><td>HSV IgM</td><td>Herpes simplex virus IgM antibody.</td></tr><tr><td style=\"white-space:nowrap\">adenovirus-igg<a name=\"microbiology-cs-adenovirus-igg\"> </a></td><td>Adenovirus IgG</td><td>Adenovirus IgG antibody.</td></tr><tr><td style=\"white-space:nowrap\">adenovirus-igm<a name=\"microbiology-cs-adenovirus-igm\"> </a></td><td>Adenovirus IgM</td><td>Adenovirus IgM antibody.</td></tr><tr><td style=\"white-space:nowrap\">vzv-igg<a name=\"microbiology-cs-vzv-igg\"> </a></td><td>VZV IgG</td><td>Varicella-zoster virus IgG antibody.</td></tr><tr><td style=\"white-space:nowrap\">vzv-igm<a name=\"microbiology-cs-vzv-igm\"> </a></td><td>VZV IgM</td><td>Varicella-zoster virus IgM antibody.</td></tr><tr><td style=\"white-space:nowrap\">blood-bkv-dna<a name=\"microbiology-cs-blood-bkv-dna\"> </a></td><td>Blood BKV-DNA</td><td>BK polyomavirus DNA in blood by PCR.</td></tr><tr><td style=\"white-space:nowrap\">urine-bkv-dna<a name=\"microbiology-cs-urine-bkv-dna\"> </a></td><td>Urine BKV-DNA</td><td>BK polyomavirus DNA in urine by PCR.</td></tr><tr><td style=\"white-space:nowrap\">bkv-dna-kidney-biopsy<a name=\"microbiology-cs-bkv-dna-kidney-biopsy\"> </a></td><td>BKV-DNA on kidney biopsy</td><td>BK polyomavirus DNA detected in kidney biopsy tissue.</td></tr><tr><td style=\"white-space:nowrap\">bkv-fish-kidney-biopsy<a name=\"microbiology-cs-bkv-fish-kidney-biopsy\"> </a></td><td>BKV FISH on kidney biopsy</td><td>BK polyomavirus detected by FISH in kidney biopsy tissue.</td></tr><tr><td style=\"white-space:nowrap\">ebv-dna-copies<a name=\"microbiology-cs-ebv-dna-copies\"> </a></td><td>EBV-DNA copies/ml</td><td>Quantitative EBV DNA viral load (copies/mL).</td></tr><tr><td style=\"white-space:nowrap\">cmv-dna-copies<a name=\"microbiology-cs-cmv-dna-copies\"> </a></td><td>CMV-DNA copies/ml</td><td>Quantitative CMV DNA viral load (copies/mL).</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-dna-copies<a name=\"microbiology-cs-parvovirus-b19-dna-copies\"> </a></td><td>Parvovirus B19 DNA copies/ml</td><td>Quantitative parvovirus B19 DNA viral load (copies/mL).</td></tr><tr><td style=\"white-space:nowrap\">blood-adenovirus-dna<a name=\"microbiology-cs-blood-adenovirus-dna\"> </a></td><td>Blood Adenovirus DNA</td><td>Adenovirus DNA in blood by PCR.</td></tr><tr><td style=\"white-space:nowrap\">blood-adenovirus-dna-copies<a name=\"microbiology-cs-blood-adenovirus-dna-copies\"> </a></td><td>Blood Adenovirus DNA copies/ml</td><td>Quantitative blood adenovirus DNA viral load (copies/mL).</td></tr><tr><td style=\"white-space:nowrap\">blood-bkv-dna-copies<a name=\"microbiology-cs-blood-bkv-dna-copies\"> </a></td><td>Blood BKV-DNA copies/ml</td><td>Quantitative blood BK virus DNA viral load (copies/mL).</td></tr><tr><td style=\"white-space:nowrap\">blood-colture<a name=\"microbiology-cs-blood-colture\"> </a></td><td>Blood culture</td><td>Blood culture for microbial growth.</td></tr><tr><td style=\"white-space:nowrap\">urine-colture<a name=\"microbiology-cs-urine-colture\"> </a></td><td>Urine culture</td><td>Urine culture for microbial growth.</td></tr><tr><td style=\"white-space:nowrap\">other-positivity<a name=\"microbiology-cs-other-positivity\"> </a></td><td>Other positivity</td><td>Other microbiological positivity not otherwise specified.</td></tr><tr><td style=\"white-space:nowrap\">ebv-hepatitis-liver<a name=\"microbiology-cs-ebv-hepatitis-liver\"> </a></td><td>EBV Hepatitis on liver</td><td>EBV-associated hepatitis involving the liver allograft.</td></tr><tr><td style=\"white-space:nowrap\">evidence-bkvan<a name=\"microbiology-cs-evidence-bkvan\"> </a></td><td>Histological evidence of BKVAN</td><td>Histological evidence of BK virus-associated nephropathy (BKVAN).</td></tr></table></div>"
},
"url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs",
"version" : "0.1.0-ci-build",
"name" : "MicrobiologyCS",
"title" : "Microbiology component codes",
"status" : "draft",
"experimental" : true,
"date" : "2026-08-11T12:50:29+00:00",
"publisher" : "Protect Child",
"contact" : [
{
"name" : "Protect Child",
"telecom" : [
{
"system" : "url",
"value" : "https://protect-child.eu/"
}
]
}
],
"description" : "Local codes for microbiology panel Observation components.",
"caseSensitive" : false,
"content" : "complete",
"count" : 33,
"concept" : [
{
"code" : "microbiology-panel",
"display" : "Microbiology studies panel",
"definition" : "Panel grouping microbiology and virology results for a visit."
},
{
"code" : "ebv-dna",
"display" : "EBV-DNA (quantitative)",
"definition" : "Epstein-Barr virus DNA detected/quantified by PCR."
},
{
"code" : "ebv-igm-anti-ea",
"display" : "EBV IgM anti-EA",
"definition" : "EBV IgM antibody to early antigen (EA)."
},
{
"code" : "ebv-igm-anti-vca",
"display" : "EBV IgM anti-VCA",
"definition" : "EBV IgM antibody to viral capsid antigen (VCA)."
},
{
"code" : "ebv-igg-anti-vca",
"display" : "EBV IgG anti-VCA",
"definition" : "EBV IgG antibody to viral capsid antigen (VCA)."
},
{
"code" : "ebv-igg-ebna",
"display" : "EBV IgG EBNA",
"definition" : "EBV IgG antibody to Epstein-Barr nuclear antigen (EBNA)."
},
{
"code" : "cmv-dna",
"display" : "CMV-DNA",
"definition" : "Cytomegalovirus DNA detected/quantified by PCR."
},
{
"code" : "cmv-igm",
"display" : "CMV IgM",
"definition" : "Cytomegalovirus IgM antibody."
},
{
"code" : "cmv-igg",
"display" : "CMV IgG",
"definition" : "Cytomegalovirus IgG antibody."
},
{
"code" : "parvovirus-b19-dna",
"display" : "Parvovirus B19 DNA",
"definition" : "Parvovirus B19 DNA detected by PCR."
},
{
"code" : "parvovirus-b19-igg",
"display" : "Parvovirus B19 IgG",
"definition" : "Parvovirus B19 IgG antibody."
},
{
"code" : "parvovirus-b19-igm",
"display" : "Parvovirus B19 IgM",
"definition" : "Parvovirus B19 IgM antibody."
},
{
"code" : "hsv-igg",
"display" : "HSV IgG",
"definition" : "Herpes simplex virus IgG antibody."
},
{
"code" : "hsv-igm",
"display" : "HSV IgM",
"definition" : "Herpes simplex virus IgM antibody."
},
{
"code" : "adenovirus-igg",
"display" : "Adenovirus IgG",
"definition" : "Adenovirus IgG antibody."
},
{
"code" : "adenovirus-igm",
"display" : "Adenovirus IgM",
"definition" : "Adenovirus IgM antibody."
},
{
"code" : "vzv-igg",
"display" : "VZV IgG",
"definition" : "Varicella-zoster virus IgG antibody."
},
{
"code" : "vzv-igm",
"display" : "VZV IgM",
"definition" : "Varicella-zoster virus IgM antibody."
},
{
"code" : "blood-bkv-dna",
"display" : "Blood BKV-DNA",
"definition" : "BK polyomavirus DNA in blood by PCR."
},
{
"code" : "urine-bkv-dna",
"display" : "Urine BKV-DNA",
"definition" : "BK polyomavirus DNA in urine by PCR."
},
{
"code" : "bkv-dna-kidney-biopsy",
"display" : "BKV-DNA on kidney biopsy",
"definition" : "BK polyomavirus DNA detected in kidney biopsy tissue."
},
{
"code" : "bkv-fish-kidney-biopsy",
"display" : "BKV FISH on kidney biopsy",
"definition" : "BK polyomavirus detected by FISH in kidney biopsy tissue."
},
{
"code" : "ebv-dna-copies",
"display" : "EBV-DNA copies/ml",
"definition" : "Quantitative EBV DNA viral load (copies/mL)."
},
{
"code" : "cmv-dna-copies",
"display" : "CMV-DNA copies/ml",
"definition" : "Quantitative CMV DNA viral load (copies/mL)."
},
{
"code" : "parvovirus-b19-dna-copies",
"display" : "Parvovirus B19 DNA copies/ml",
"definition" : "Quantitative parvovirus B19 DNA viral load (copies/mL)."
},
{
"code" : "blood-adenovirus-dna",
"display" : "Blood Adenovirus DNA",
"definition" : "Adenovirus DNA in blood by PCR."
},
{
"code" : "blood-adenovirus-dna-copies",
"display" : "Blood Adenovirus DNA copies/ml",
"definition" : "Quantitative blood adenovirus DNA viral load (copies/mL)."
},
{
"code" : "blood-bkv-dna-copies",
"display" : "Blood BKV-DNA copies/ml",
"definition" : "Quantitative blood BK virus DNA viral load (copies/mL)."
},
{
"code" : "blood-colture",
"display" : "Blood culture",
"definition" : "Blood culture for microbial growth."
},
{
"code" : "urine-colture",
"display" : "Urine culture",
"definition" : "Urine culture for microbial growth."
},
{
"code" : "other-positivity",
"display" : "Other positivity",
"definition" : "Other microbiological positivity not otherwise specified."
},
{
"code" : "ebv-hepatitis-liver",
"display" : "EBV Hepatitis on liver",
"definition" : "EBV-associated hepatitis involving the liver allograft."
},
{
"code" : "evidence-bkvan",
"display" : "Histological evidence of BKVAN",
"definition" : "Histological evidence of BK virus-associated nephropathy (BKVAN)."
}
]
}