PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-06-05 |
{
"resourceType" : "CodeSystem",
"id" : "microbiology-cs",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem microbiology-cs</b></p><a name=\"microbiology-cs\"> </a><a name=\"hcmicrobiology-cs\"> </a><p>This case-insensitive code system <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">ebv-dna<a name=\"microbiology-cs-ebv-dna\"> </a></td><td>EBV-DNA (quantitative)</td></tr><tr><td style=\"white-space:nowrap\">ebv-igm-anti-ea<a name=\"microbiology-cs-ebv-igm-anti-ea\"> </a></td><td>EBV IgM anti-EA</td></tr><tr><td style=\"white-space:nowrap\">ebv-igm-anti-vca<a name=\"microbiology-cs-ebv-igm-anti-vca\"> </a></td><td>EBV IgM anti-VCA</td></tr><tr><td style=\"white-space:nowrap\">ebv-igg-anti-vca<a name=\"microbiology-cs-ebv-igg-anti-vca\"> </a></td><td>EBV IgG anti-VCA</td></tr><tr><td style=\"white-space:nowrap\">ebv-igg-ebna<a name=\"microbiology-cs-ebv-igg-ebna\"> </a></td><td>EBV IgG EBNA</td></tr><tr><td style=\"white-space:nowrap\">cmv-dna<a name=\"microbiology-cs-cmv-dna\"> </a></td><td>CMV-DNA</td></tr><tr><td style=\"white-space:nowrap\">cmv-igm<a name=\"microbiology-cs-cmv-igm\"> </a></td><td>CMV IgM</td></tr><tr><td style=\"white-space:nowrap\">cmv-igg<a name=\"microbiology-cs-cmv-igg\"> </a></td><td>CMV IgG</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-dna<a name=\"microbiology-cs-parvovirus-b19-dna\"> </a></td><td>Parvovirus B19 DNA</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-igg<a name=\"microbiology-cs-parvovirus-b19-igg\"> </a></td><td>Parvovirus B19 IgG</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-igm<a name=\"microbiology-cs-parvovirus-b19-igm\"> </a></td><td>Parvovirus B19 IgM</td></tr><tr><td style=\"white-space:nowrap\">hsv-igg<a name=\"microbiology-cs-hsv-igg\"> </a></td><td>HSV IgG</td></tr><tr><td style=\"white-space:nowrap\">hsv-igm<a name=\"microbiology-cs-hsv-igm\"> </a></td><td>HSV IgM</td></tr><tr><td style=\"white-space:nowrap\">adenovirus-igg<a name=\"microbiology-cs-adenovirus-igg\"> </a></td><td>Adenovirus IgG</td></tr><tr><td style=\"white-space:nowrap\">adenovirus-igm<a name=\"microbiology-cs-adenovirus-igm\"> </a></td><td>Adenovirus IgM</td></tr><tr><td style=\"white-space:nowrap\">vzv-igg<a name=\"microbiology-cs-vzv-igg\"> </a></td><td>VZV IgG</td></tr><tr><td style=\"white-space:nowrap\">vzv-igm<a name=\"microbiology-cs-vzv-igm\"> </a></td><td>VZV IgM</td></tr><tr><td style=\"white-space:nowrap\">blood-bkv-dna<a name=\"microbiology-cs-blood-bkv-dna\"> </a></td><td>Blood BKV-DNA</td></tr><tr><td style=\"white-space:nowrap\">urine-bkv-dna<a name=\"microbiology-cs-urine-bkv-dna\"> </a></td><td>Urine BKV-DNA</td></tr><tr><td style=\"white-space:nowrap\">bkv-dna-kidney-biopsy<a name=\"microbiology-cs-bkv-dna-kidney-biopsy\"> </a></td><td>BKV-DNA on kidney biopsy</td></tr><tr><td style=\"white-space:nowrap\">bkv-fish-kidney-biopsy<a name=\"microbiology-cs-bkv-fish-kidney-biopsy\"> </a></td><td>BKV FISH on kidney biopsy</td></tr><tr><td style=\"white-space:nowrap\">ebv-dna-copies<a name=\"microbiology-cs-ebv-dna-copies\"> </a></td><td>EBV-DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">cmv-dna-copies<a name=\"microbiology-cs-cmv-dna-copies\"> </a></td><td>CMV-DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-dna-copies<a name=\"microbiology-cs-parvovirus-b19-dna-copies\"> </a></td><td>Parvovirus B19 DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">blood-adenovirus-dna<a name=\"microbiology-cs-blood-adenovirus-dna\"> </a></td><td>Blood Adenovirus DNA</td></tr><tr><td style=\"white-space:nowrap\">blood-adenovirus-dna-copies<a name=\"microbiology-cs-blood-adenovirus-dna-copies\"> </a></td><td>Blood Adenovirus DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">blood-bkv-dna-copies<a name=\"microbiology-cs-blood-bkv-dna-copies\"> </a></td><td>Blood BKV-DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">blood-colture<a name=\"microbiology-cs-blood-colture\"> </a></td><td>Blood culture</td></tr><tr><td style=\"white-space:nowrap\">urine-colture<a name=\"microbiology-cs-urine-colture\"> </a></td><td>Urine culture</td></tr><tr><td style=\"white-space:nowrap\">other-positivity<a name=\"microbiology-cs-other-positivity\"> </a></td><td>Other positivity</td></tr><tr><td style=\"white-space:nowrap\">ebv-hepatitis-liver<a name=\"microbiology-cs-ebv-hepatitis-liver\"> </a></td><td>EBV Hepatitis on liver</td></tr><tr><td style=\"white-space:nowrap\">evidence-bkvan<a name=\"microbiology-cs-evidence-bkvan\"> </a></td><td>Histological evidence of BKVAN</td></tr></table></div>"
},
"url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
"version" : "0.1.0-ci-build",
"name" : "MicrobiologyCS",
"title" : "Microbiology component codes",
"status" : "draft",
"experimental" : true,
"date" : "2026-06-05T19:23:32+00:00",
"publisher" : "Protect Child",
"contact" : [
{
"name" : "Protect Child",
"telecom" : [
{
"system" : "url",
"value" : "https://protect-child.eu/"
}
]
}
],
"description" : "Local codes for microbiology panel Observation components.",
"caseSensitive" : false,
"content" : "complete",
"count" : 32,
"concept" : [
{
"code" : "ebv-dna",
"display" : "EBV-DNA (quantitative)"
},
{
"code" : "ebv-igm-anti-ea",
"display" : "EBV IgM anti-EA"
},
{
"code" : "ebv-igm-anti-vca",
"display" : "EBV IgM anti-VCA"
},
{
"code" : "ebv-igg-anti-vca",
"display" : "EBV IgG anti-VCA"
},
{
"code" : "ebv-igg-ebna",
"display" : "EBV IgG EBNA"
},
{
"code" : "cmv-dna",
"display" : "CMV-DNA"
},
{
"code" : "cmv-igm",
"display" : "CMV IgM"
},
{
"code" : "cmv-igg",
"display" : "CMV IgG"
},
{
"code" : "parvovirus-b19-dna",
"display" : "Parvovirus B19 DNA"
},
{
"code" : "parvovirus-b19-igg",
"display" : "Parvovirus B19 IgG"
},
{
"code" : "parvovirus-b19-igm",
"display" : "Parvovirus B19 IgM"
},
{
"code" : "hsv-igg",
"display" : "HSV IgG"
},
{
"code" : "hsv-igm",
"display" : "HSV IgM"
},
{
"code" : "adenovirus-igg",
"display" : "Adenovirus IgG"
},
{
"code" : "adenovirus-igm",
"display" : "Adenovirus IgM"
},
{
"code" : "vzv-igg",
"display" : "VZV IgG"
},
{
"code" : "vzv-igm",
"display" : "VZV IgM"
},
{
"code" : "blood-bkv-dna",
"display" : "Blood BKV-DNA"
},
{
"code" : "urine-bkv-dna",
"display" : "Urine BKV-DNA"
},
{
"code" : "bkv-dna-kidney-biopsy",
"display" : "BKV-DNA on kidney biopsy"
},
{
"code" : "bkv-fish-kidney-biopsy",
"display" : "BKV FISH on kidney biopsy"
},
{
"code" : "ebv-dna-copies",
"display" : "EBV-DNA copies/ml"
},
{
"code" : "cmv-dna-copies",
"display" : "CMV-DNA copies/ml"
},
{
"code" : "parvovirus-b19-dna-copies",
"display" : "Parvovirus B19 DNA copies/ml"
},
{
"code" : "blood-adenovirus-dna",
"display" : "Blood Adenovirus DNA"
},
{
"code" : "blood-adenovirus-dna-copies",
"display" : "Blood Adenovirus DNA copies/ml"
},
{
"code" : "blood-bkv-dna-copies",
"display" : "Blood BKV-DNA copies/ml"
},
{
"code" : "blood-colture",
"display" : "Blood culture"
},
{
"code" : "urine-colture",
"display" : "Urine culture"
},
{
"code" : "other-positivity",
"display" : "Other positivity"
},
{
"code" : "ebv-hepatitis-liver",
"display" : "EBV Hepatitis on liver"
},
{
"code" : "evidence-bkvan",
"display" : "Histological evidence of BKVAN"
}
]
}