PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: Microbiology component codes - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:CodeSystem ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "microbiology-cs"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem microbiology-cs</b></p><a name=\"microbiology-cs\"> </a><a name=\"hcmicrobiology-cs\"> </a><p>This case-insensitive code system <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">ebv-dna<a name=\"microbiology-cs-ebv-dna\"> </a></td><td>EBV-DNA (quantitative)</td></tr><tr><td style=\"white-space:nowrap\">ebv-igm-anti-ea<a name=\"microbiology-cs-ebv-igm-anti-ea\"> </a></td><td>EBV IgM anti-EA</td></tr><tr><td style=\"white-space:nowrap\">ebv-igm-anti-vca<a name=\"microbiology-cs-ebv-igm-anti-vca\"> </a></td><td>EBV IgM anti-VCA</td></tr><tr><td style=\"white-space:nowrap\">ebv-igg-anti-vca<a name=\"microbiology-cs-ebv-igg-anti-vca\"> </a></td><td>EBV IgG anti-VCA</td></tr><tr><td style=\"white-space:nowrap\">ebv-igg-ebna<a name=\"microbiology-cs-ebv-igg-ebna\"> </a></td><td>EBV IgG EBNA</td></tr><tr><td style=\"white-space:nowrap\">cmv-dna<a name=\"microbiology-cs-cmv-dna\"> </a></td><td>CMV-DNA</td></tr><tr><td style=\"white-space:nowrap\">cmv-igm<a name=\"microbiology-cs-cmv-igm\"> </a></td><td>CMV IgM</td></tr><tr><td style=\"white-space:nowrap\">cmv-igg<a name=\"microbiology-cs-cmv-igg\"> </a></td><td>CMV IgG</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-dna<a name=\"microbiology-cs-parvovirus-b19-dna\"> </a></td><td>Parvovirus B19 DNA</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-igg<a name=\"microbiology-cs-parvovirus-b19-igg\"> </a></td><td>Parvovirus B19 IgG</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-igm<a name=\"microbiology-cs-parvovirus-b19-igm\"> </a></td><td>Parvovirus B19 IgM</td></tr><tr><td style=\"white-space:nowrap\">hsv-igg<a name=\"microbiology-cs-hsv-igg\"> </a></td><td>HSV IgG</td></tr><tr><td style=\"white-space:nowrap\">hsv-igm<a name=\"microbiology-cs-hsv-igm\"> </a></td><td>HSV IgM</td></tr><tr><td style=\"white-space:nowrap\">adenovirus-igg<a name=\"microbiology-cs-adenovirus-igg\"> </a></td><td>Adenovirus IgG</td></tr><tr><td style=\"white-space:nowrap\">adenovirus-igm<a name=\"microbiology-cs-adenovirus-igm\"> </a></td><td>Adenovirus IgM</td></tr><tr><td style=\"white-space:nowrap\">vzv-igg<a name=\"microbiology-cs-vzv-igg\"> </a></td><td>VZV IgG</td></tr><tr><td style=\"white-space:nowrap\">vzv-igm<a name=\"microbiology-cs-vzv-igm\"> </a></td><td>VZV IgM</td></tr><tr><td style=\"white-space:nowrap\">blood-bkv-dna<a name=\"microbiology-cs-blood-bkv-dna\"> </a></td><td>Blood BKV-DNA</td></tr><tr><td style=\"white-space:nowrap\">urine-bkv-dna<a name=\"microbiology-cs-urine-bkv-dna\"> </a></td><td>Urine BKV-DNA</td></tr><tr><td style=\"white-space:nowrap\">bkv-dna-kidney-biopsy<a name=\"microbiology-cs-bkv-dna-kidney-biopsy\"> </a></td><td>BKV-DNA on kidney biopsy</td></tr><tr><td style=\"white-space:nowrap\">bkv-fish-kidney-biopsy<a name=\"microbiology-cs-bkv-fish-kidney-biopsy\"> </a></td><td>BKV FISH on kidney biopsy</td></tr><tr><td style=\"white-space:nowrap\">ebv-dna-copies<a name=\"microbiology-cs-ebv-dna-copies\"> </a></td><td>EBV-DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">cmv-dna-copies<a name=\"microbiology-cs-cmv-dna-copies\"> </a></td><td>CMV-DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">parvovirus-b19-dna-copies<a name=\"microbiology-cs-parvovirus-b19-dna-copies\"> </a></td><td>Parvovirus B19 DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">blood-adenovirus-dna<a name=\"microbiology-cs-blood-adenovirus-dna\"> </a></td><td>Blood Adenovirus DNA</td></tr><tr><td style=\"white-space:nowrap\">blood-adenovirus-dna-copies<a name=\"microbiology-cs-blood-adenovirus-dna-copies\"> </a></td><td>Blood Adenovirus DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">blood-bkv-dna-copies<a name=\"microbiology-cs-blood-bkv-dna-copies\"> </a></td><td>Blood BKV-DNA copies/ml</td></tr><tr><td style=\"white-space:nowrap\">blood-colture<a name=\"microbiology-cs-blood-colture\"> </a></td><td>Blood culture</td></tr><tr><td style=\"white-space:nowrap\">urine-colture<a name=\"microbiology-cs-urine-colture\"> </a></td><td>Urine culture</td></tr><tr><td style=\"white-space:nowrap\">other-positivity<a name=\"microbiology-cs-other-positivity\"> </a></td><td>Other positivity</td></tr><tr><td style=\"white-space:nowrap\">ebv-hepatitis-liver<a name=\"microbiology-cs-ebv-hepatitis-liver\"> </a></td><td>EBV Hepatitis on liver</td></tr><tr><td style=\"white-space:nowrap\">evidence-bkvan<a name=\"microbiology-cs-evidence-bkvan\"> </a></td><td>Histological evidence of BKVAN</td></tr></table></div>"^^rdf:XMLLiteral ]
  ] ; # 
  fhir:url [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>
  ] ; # 
  fhir:version [ fhir:v "0.1.0-ci-build"] ; # 
  fhir:name [ fhir:v "MicrobiologyCS"] ; # 
  fhir:title [ fhir:v "Microbiology component codes"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:experimental [ fhir:v true] ; # 
  fhir:date [ fhir:v "2026-06-05T19:23:32+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "Protect Child"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "Protect Child" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://protect-child.eu/" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Local codes for microbiology panel Observation components."] ; # 
  fhir:caseSensitive [ fhir:v false] ; # 
  fhir:content [ fhir:v "complete"] ; # 
  fhir:count [ fhir:v "32"^^xsd:nonNegativeInteger] ; # 
  fhir:concept ( [
fhir:code [ fhir:v "ebv-dna" ] ;
fhir:display [ fhir:v "EBV-DNA (quantitative)" ]
  ] [
fhir:code [ fhir:v "ebv-igm-anti-ea" ] ;
fhir:display [ fhir:v "EBV IgM anti-EA" ]
  ] [
fhir:code [ fhir:v "ebv-igm-anti-vca" ] ;
fhir:display [ fhir:v "EBV IgM anti-VCA" ]
  ] [
fhir:code [ fhir:v "ebv-igg-anti-vca" ] ;
fhir:display [ fhir:v "EBV IgG anti-VCA" ]
  ] [
fhir:code [ fhir:v "ebv-igg-ebna" ] ;
fhir:display [ fhir:v "EBV IgG EBNA" ]
  ] [
fhir:code [ fhir:v "cmv-dna" ] ;
fhir:display [ fhir:v "CMV-DNA" ]
  ] [
fhir:code [ fhir:v "cmv-igm" ] ;
fhir:display [ fhir:v "CMV IgM" ]
  ] [
fhir:code [ fhir:v "cmv-igg" ] ;
fhir:display [ fhir:v "CMV IgG" ]
  ] [
fhir:code [ fhir:v "parvovirus-b19-dna" ] ;
fhir:display [ fhir:v "Parvovirus B19 DNA" ]
  ] [
fhir:code [ fhir:v "parvovirus-b19-igg" ] ;
fhir:display [ fhir:v "Parvovirus B19 IgG" ]
  ] [
fhir:code [ fhir:v "parvovirus-b19-igm" ] ;
fhir:display [ fhir:v "Parvovirus B19 IgM" ]
  ] [
fhir:code [ fhir:v "hsv-igg" ] ;
fhir:display [ fhir:v "HSV IgG" ]
  ] [
fhir:code [ fhir:v "hsv-igm" ] ;
fhir:display [ fhir:v "HSV IgM" ]
  ] [
fhir:code [ fhir:v "adenovirus-igg" ] ;
fhir:display [ fhir:v "Adenovirus IgG" ]
  ] [
fhir:code [ fhir:v "adenovirus-igm" ] ;
fhir:display [ fhir:v "Adenovirus IgM" ]
  ] [
fhir:code [ fhir:v "vzv-igg" ] ;
fhir:display [ fhir:v "VZV IgG" ]
  ] [
fhir:code [ fhir:v "vzv-igm" ] ;
fhir:display [ fhir:v "VZV IgM" ]
  ] [
fhir:code [ fhir:v "blood-bkv-dna" ] ;
fhir:display [ fhir:v "Blood BKV-DNA" ]
  ] [
fhir:code [ fhir:v "urine-bkv-dna" ] ;
fhir:display [ fhir:v "Urine BKV-DNA" ]
  ] [
fhir:code [ fhir:v "bkv-dna-kidney-biopsy" ] ;
fhir:display [ fhir:v "BKV-DNA on kidney biopsy" ]
  ] [
fhir:code [ fhir:v "bkv-fish-kidney-biopsy" ] ;
fhir:display [ fhir:v "BKV FISH on kidney biopsy" ]
  ] [
fhir:code [ fhir:v "ebv-dna-copies" ] ;
fhir:display [ fhir:v "EBV-DNA copies/ml" ]
  ] [
fhir:code [ fhir:v "cmv-dna-copies" ] ;
fhir:display [ fhir:v "CMV-DNA copies/ml" ]
  ] [
fhir:code [ fhir:v "parvovirus-b19-dna-copies" ] ;
fhir:display [ fhir:v "Parvovirus B19 DNA copies/ml" ]
  ] [
fhir:code [ fhir:v "blood-adenovirus-dna" ] ;
fhir:display [ fhir:v "Blood Adenovirus DNA" ]
  ] [
fhir:code [ fhir:v "blood-adenovirus-dna-copies" ] ;
fhir:display [ fhir:v "Blood Adenovirus DNA copies/ml" ]
  ] [
fhir:code [ fhir:v "blood-bkv-dna-copies" ] ;
fhir:display [ fhir:v "Blood BKV-DNA copies/ml" ]
  ] [
fhir:code [ fhir:v "blood-colture" ] ;
fhir:display [ fhir:v "Blood culture" ]
  ] [
fhir:code [ fhir:v "urine-colture" ] ;
fhir:display [ fhir:v "Urine culture" ]
  ] [
fhir:code [ fhir:v "other-positivity" ] ;
fhir:display [ fhir:v "Other positivity" ]
  ] [
fhir:code [ fhir:v "ebv-hepatitis-liver" ] ;
fhir:display [ fhir:v "EBV Hepatitis on liver" ]
  ] [
fhir:code [ fhir:v "evidence-bkvan" ] ;
fhir:display [ fhir:v "Histological evidence of BKVAN" ]
  ] ) . #