PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: Microbiology Nucleic Acid Detection Tests - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/ValueSet/microbiology-nucleic-acid-vs> a fhir:ValueSet ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "microbiology-nucleic-acid-vs"] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet microbiology-nucleic-acid-vs</b></p><a name=\"microbiology-nucleic-acid-vs\"> </a><a name=\"hcmicrobiology-nucleic-acid-vs\"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include these codes as defined in <a href=\"http://loinc.org\"><code>http://loinc.org</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"https://loinc.org/5002-1/\">5002-1</a></td><td>Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection</td></tr><tr><td><a href=\"https://loinc.org/4996-5/\">4996-5</a></td><td>Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection</td></tr><tr><td><a href=\"https://loinc.org/50348-2/\">50348-2</a></td><td>Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection</td></tr><tr><td><a href=\"https://loinc.org/75543-9/\">75543-9</a></td><td>Parvovirus B19 DNA [Presence] in Plasma from Donor by NAA with probe detection</td></tr><tr><td><a href=\"https://loinc.org/86511-3/\">86511-3</a></td><td>Adenovirus DNA [Presence] in Blood by NAA with probe detection</td></tr><tr><td><a href=\"https://loinc.org/63475-8/\">63475-8</a></td><td>BK virus DNA [Presence] in Blood</td></tr><tr><td><a href=\"https://loinc.org/33978-8/\">33978-8</a></td><td>BK virus DNA [Presence] in Urine by NAA with probe detection</td></tr><tr><td><a href=\"https://loinc.org/47251-4/\">47251-4</a></td><td>BK virus DNA [Presence] in Specimen by NAA with probe detection</td></tr></table></li><li>Include these codes as defined in <a href=\"CodeSystem-microbiology-cs.html\"><code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs</code></a><span title=\"Version is not explicitly stated, which means it is fixed to the version provided in this specification\"> version ?0.1.0-ci-build</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href=\"CodeSystem-microbiology-cs.html#microbiology-cs-bkv-dna-ish-tissue\">bkv-dna-ish-tissue</a></td><td style=\"color: #cccccc\">BK virus DNA [Presence] in Tissue by in situ hybridization</td><td>BK polyomavirus DNA detected in tissue (e.g. kidney allograft biopsy) by (fluorescence) in situ hybridisation. No LOINC code exists.</td></tr></table></li></ul></div>"
  ] ;
  fhir:ValueSet.url [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ValueSet/microbiology-nucleic-acid-vs"] ;
  fhir:ValueSet.version [ fhir:value "0.1.0-ci-build"] ;
  fhir:ValueSet.name [ fhir:value "MicrobiologyNucleicAcidVS"] ;
  fhir:ValueSet.title [ fhir:value "Microbiology Nucleic Acid Detection Tests"] ;
  fhir:ValueSet.status [ fhir:value "draft"] ;
  fhir:ValueSet.experimental [ fhir:value "true"^^xsd:boolean] ;
  fhir:ValueSet.date [ fhir:value "2026-09-28T06:51:47+00:00"^^xsd:dateTime] ;
  fhir:ValueSet.publisher [ fhir:value "Protect Child"] ;
  fhir:ValueSet.contact [
     fhir:index 0 ;
     fhir:ContactDetail.name [ fhir:value "Protect Child" ] ;
     fhir:ContactDetail.telecom [
       fhir:index 0 ;
       fhir:ContactPoint.system [ fhir:value "url" ] ;
       fhir:ContactPoint.value [ fhir:value "https://protect-child.eu/" ]
     ]
  ] ;
  fhir:ValueSet.description [ fhir:value "LOINC codes for qualitative viral DNA detection in the PROTECT-CHILD microbiology table."] ;
  fhir:ValueSet.compose [
     fhir:ValueSet.compose.include [
       fhir:index 0 ;
       fhir:ValueSet.compose.include.system [ fhir:value "http://loinc.org" ] ;
       fhir:ValueSet.compose.include.concept [
         fhir:index 0 ;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "5002-1" ] ;
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection" ]
       ], [
         fhir:index 1 ;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "4996-5" ] ;
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection" ]
       ], [
         fhir:index 2 ;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "50348-2" ] ;
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection" ]
       ], [
         fhir:index 3 ;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "75543-9" ] ;
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Parvovirus B19 DNA [Presence] in Plasma from Donor by NAA with probe detection" ]
       ], [
         fhir:index 4 ;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "86511-3" ] ;
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Adenovirus DNA [Presence] in Blood by NAA with probe detection" ]
       ], [
         fhir:index 5 ;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "63475-8" ] ;
         fhir:ValueSet.compose.include.concept.display [ fhir:value "BK virus DNA [Presence] in Blood" ]
       ], [
         fhir:index 6 ;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "33978-8" ] ;
         fhir:ValueSet.compose.include.concept.display [ fhir:value "BK virus DNA [Presence] in Urine by NAA with probe detection" ]
       ], [
         fhir:index 7 ;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "47251-4" ] ;
         fhir:ValueSet.compose.include.concept.display [ fhir:value "BK virus DNA [Presence] in Specimen by NAA with probe detection" ]
       ]
     ], [
       fhir:index 1 ;
       fhir:ValueSet.compose.include.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
       fhir:ValueSet.compose.include.concept [
         fhir:index 0 ;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "bkv-dna-ish-tissue" ]
       ]
     ]
  ] .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/ValueSet/microbiology-nucleic-acid-vs.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/ValueSet/microbiology-nucleic-acid-vs.ttl> .