PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Official URL: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm | Version: 0.1.0-ci-build | |||
| Draft as of 2026-09-28 | Computable Name: PcMicrobiology | |||
Logical model for the PROTECT-CHILD microbiology table. Covers viral serology, DNA quantification, culture results, and BKVAN evidence.
Usages:
You can also check for usages in the FHIR IG Statistics
Description of Profiles, Differentials, Snapshots and how the different presentations work.
This structure is derived from Base
| Name | Flags | Card. | Type | Description & Constraints Filter:   | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
  pcMicrobiologyLm |
0..* | Base | Microbiology logical model | |||||||
  microbiologyId |
O | 1..1 | string | microbiology_id
| ||||||
 visitId |
O | 1..1 | Reference(Visit logical model) | visit_id
| ||||||
| donorId |
O | 0..1 | Reference(Donor logical model) | donor_id
| ||||||
| ebvDna |
O | 0..1 | boolean | ebv_dna
| ||||||
| ebvDnaCopies |
O | 0..1 | decimal | ebv_dna_copies
| ||||||
| ebvIgmAntiEa |
O | 0..1 | boolean | ebv_igm_anti_ea
| ||||||
| ebvIgmAntiVca |
O | 0..1 | boolean | ebv_igm_anti_vca
| ||||||
| ebvIggAntiVca |
O | 0..1 | boolean | ebv_igg_anti_vca
| ||||||
| ebvIggEbna |
O | 0..1 | boolean | ebv_igg_ebna
| ||||||
| cmvDna |
O | 0..1 | boolean | cmv_dna
| ||||||
| cmvDnaCopies |
O | 0..1 | decimal | cmv_dna_copies
| ||||||
| cmvIgm |
O | 0..1 | boolean | cmv_igm
| ||||||
| cmvIgg |
O | 0..1 | boolean | cmv_igg
| ||||||
| parvovirusB19Dna |
O | 0..1 | boolean | parvovirus_b19_dna
| ||||||
| parvovirusB19DnaCopies |
O | 0..1 | decimal | parvovirus_b19_dna_copies
| ||||||
| parvovirusB19Igg |
O | 0..1 | boolean | parvovirus_b19_igg
| ||||||
| parvovirusB19Igm |
O | 0..1 | boolean | parvovirus_b19_igm
| ||||||
| hsvIgg |
O | 0..1 | boolean | hsv_igg
| ||||||
| hsvIgm |
O | 0..1 | boolean | hsv_igm
| ||||||
| adenovirusIgg |
O | 0..1 | boolean | adenovirus_igg
| ||||||
| adenovirusIgm |
O | 0..1 | boolean | adenovirus_igm
| ||||||
| bloodAdenovirusDna |
O | 0..1 | boolean | blood_adenovirus_dna
| ||||||
| bloodAdenovirusDnaCopies |
O | 0..1 | decimal | blood_adenovirus_dna_copies
| ||||||
| vzvIgg |
O | 0..1 | boolean | vzv_igg
| ||||||
| vzvIgm |
O | 0..1 | boolean | vzv_igm
| ||||||
| bloodBkvDna |
O | 0..1 | boolean | blood_bkv_dna
| ||||||
| bloodBkvDnaCopies |
O | 0..1 | decimal | blood_bkv_dna_copies
| ||||||
| urineBkvDna |
O | 0..1 | boolean | urine_bkv_dna
| ||||||
| bkvDnaKidneyBiopsy |
O | 0..1 | boolean | bkv_dna_kidney_biopsy
| ||||||
| bkvFishKidneyBiopsy |
O | 0..1 | boolean | bkv_fish_kidney_biopsy
| ||||||
| bloodColture |
O | 0..1 | boolean | blood_colture
| ||||||
| urineColture |
O | 0..1 | boolean | urine_colture
| ||||||
| otherPositivity |
O | 0..1 | string | other_positivity
| ||||||
| ebvHepatitisLiver |
O | 0..1 | boolean | ebv_hepatitis_liver
| ||||||
 evidenceBkvan |
O | 0..1 | code | evidence_bkvan
| ||||||
| Documentation for this format | ||||||||||
| Name | Flags | Card. | Type | Description & Constraints Filter: | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| pcMicrobiologyLm |
0..* | Base | Microbiology logical model | |||||||
| microbiologyId |
O | 1..1 | string | microbiology_id
| ||||||
| visitId |
O | 1..1 | Reference(Visit logical model) | visit_id
| ||||||
| donorId |
O | 0..1 | Reference(Donor logical model) | donor_id
| ||||||
| ebvDna |
O | 0..1 | boolean | ebv_dna
| ||||||
| ebvDnaCopies |
O | 0..1 | decimal | ebv_dna_copies
| ||||||
| ebvIgmAntiEa |
O | 0..1 | boolean | ebv_igm_anti_ea
| ||||||
| ebvIgmAntiVca |
O | 0..1 | boolean | ebv_igm_anti_vca
| ||||||
| ebvIggAntiVca |
O | 0..1 | boolean | ebv_igg_anti_vca
| ||||||
| ebvIggEbna |
O | 0..1 | boolean | ebv_igg_ebna
| ||||||
| cmvDna |
O | 0..1 | boolean | cmv_dna
| ||||||
| cmvDnaCopies |
O | 0..1 | decimal | cmv_dna_copies
| ||||||
| cmvIgm |
O | 0..1 | boolean | cmv_igm
| ||||||
| cmvIgg |
O | 0..1 | boolean | cmv_igg
| ||||||
| parvovirusB19Dna |
O | 0..1 | boolean | parvovirus_b19_dna
| ||||||
| parvovirusB19DnaCopies |
O | 0..1 | decimal | parvovirus_b19_dna_copies
| ||||||
| parvovirusB19Igg |
O | 0..1 | boolean | parvovirus_b19_igg
| ||||||
| parvovirusB19Igm |
O | 0..1 | boolean | parvovirus_b19_igm
| ||||||
| hsvIgg |
O | 0..1 | boolean | hsv_igg
| ||||||
| hsvIgm |
O | 0..1 | boolean | hsv_igm
| ||||||
| adenovirusIgg |
O | 0..1 | boolean | adenovirus_igg
| ||||||
| adenovirusIgm |
O | 0..1 | boolean | adenovirus_igm
| ||||||
| bloodAdenovirusDna |
O | 0..1 | boolean | blood_adenovirus_dna
| ||||||
| bloodAdenovirusDnaCopies |
O | 0..1 | decimal | blood_adenovirus_dna_copies
| ||||||
| vzvIgg |
O | 0..1 | boolean | vzv_igg
| ||||||
| vzvIgm |
O | 0..1 | boolean | vzv_igm
| ||||||
| bloodBkvDna |
O | 0..1 | boolean | blood_bkv_dna
| ||||||
| bloodBkvDnaCopies |
O | 0..1 | decimal | blood_bkv_dna_copies
| ||||||
| urineBkvDna |
O | 0..1 | boolean | urine_bkv_dna
| ||||||
| bkvDnaKidneyBiopsy |
O | 0..1 | boolean | bkv_dna_kidney_biopsy
| ||||||
| bkvFishKidneyBiopsy |
O | 0..1 | boolean | bkv_fish_kidney_biopsy
| ||||||
| bloodColture |
O | 0..1 | boolean | blood_colture
| ||||||
| urineColture |
O | 0..1 | boolean | urine_colture
| ||||||
| otherPositivity |
O | 0..1 | string | other_positivity
| ||||||
| ebvHepatitisLiver |
O | 0..1 | boolean | ebv_hepatitis_liver
| ||||||
| evidenceBkvan |
O | 0..1 | code | evidence_bkvan
| ||||||
| Documentation for this format | ||||||||||
This structure is derived from Base
Key Elements View
| Name | Flags | Card. | Type | Description & Constraints Filter: | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| pcMicrobiologyLm |
0..* | Base | Microbiology logical model | |||||||
| microbiologyId |
O | 1..1 | string | microbiology_id
| ||||||
| visitId |
O | 1..1 | Reference(Visit logical model) | visit_id
| ||||||
| donorId |
O | 0..1 | Reference(Donor logical model) | donor_id
| ||||||
| ebvDna |
O | 0..1 | boolean | ebv_dna
| ||||||
| ebvDnaCopies |
O | 0..1 | decimal | ebv_dna_copies
| ||||||
| ebvIgmAntiEa |
O | 0..1 | boolean | ebv_igm_anti_ea
| ||||||
| ebvIgmAntiVca |
O | 0..1 | boolean | ebv_igm_anti_vca
| ||||||
| ebvIggAntiVca |
O | 0..1 | boolean | ebv_igg_anti_vca
| ||||||
| ebvIggEbna |
O | 0..1 | boolean | ebv_igg_ebna
| ||||||
| cmvDna |
O | 0..1 | boolean | cmv_dna
| ||||||
| cmvDnaCopies |
O | 0..1 | decimal | cmv_dna_copies
| ||||||
| cmvIgm |
O | 0..1 | boolean | cmv_igm
| ||||||
| cmvIgg |
O | 0..1 | boolean | cmv_igg
| ||||||
| parvovirusB19Dna |
O | 0..1 | boolean | parvovirus_b19_dna
| ||||||
| parvovirusB19DnaCopies |
O | 0..1 | decimal | parvovirus_b19_dna_copies
| ||||||
| parvovirusB19Igg |
O | 0..1 | boolean | parvovirus_b19_igg
| ||||||
| parvovirusB19Igm |
O | 0..1 | boolean | parvovirus_b19_igm
| ||||||
| hsvIgg |
O | 0..1 | boolean | hsv_igg
| ||||||
| hsvIgm |
O | 0..1 | boolean | hsv_igm
| ||||||
| adenovirusIgg |
O | 0..1 | boolean | adenovirus_igg
| ||||||
| adenovirusIgm |
O | 0..1 | boolean | adenovirus_igm
| ||||||
| bloodAdenovirusDna |
O | 0..1 | boolean | blood_adenovirus_dna
| ||||||
| bloodAdenovirusDnaCopies |
O | 0..1 | decimal | blood_adenovirus_dna_copies
| ||||||
| vzvIgg |
O | 0..1 | boolean | vzv_igg
| ||||||
| vzvIgm |
O | 0..1 | boolean | vzv_igm
| ||||||
| bloodBkvDna |
O | 0..1 | boolean | blood_bkv_dna
| ||||||
| bloodBkvDnaCopies |
O | 0..1 | decimal | blood_bkv_dna_copies
| ||||||
| urineBkvDna |
O | 0..1 | boolean | urine_bkv_dna
| ||||||
| bkvDnaKidneyBiopsy |
O | 0..1 | boolean | bkv_dna_kidney_biopsy
| ||||||
| bkvFishKidneyBiopsy |
O | 0..1 | boolean | bkv_fish_kidney_biopsy
| ||||||
| bloodColture |
O | 0..1 | boolean | blood_colture
| ||||||
| urineColture |
O | 0..1 | boolean | urine_colture
| ||||||
| otherPositivity |
O | 0..1 | string | other_positivity
| ||||||
| ebvHepatitisLiver |
O | 0..1 | boolean | ebv_hepatitis_liver
| ||||||
| evidenceBkvan |
O | 0..1 | code | evidence_bkvan
| ||||||
| Documentation for this format | ||||||||||
Differential View
This structure is derived from Base
| Name | Flags | Card. | Type | Description & Constraints Filter: | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| pcMicrobiologyLm |
0..* | Base | Microbiology logical model | |||||||
| microbiologyId |
O | 1..1 | string | microbiology_id
| ||||||
| visitId |
O | 1..1 | Reference(Visit logical model) | visit_id
| ||||||
| donorId |
O | 0..1 | Reference(Donor logical model) | donor_id
| ||||||
| ebvDna |
O | 0..1 | boolean | ebv_dna
| ||||||
| ebvDnaCopies |
O | 0..1 | decimal | ebv_dna_copies
| ||||||
| ebvIgmAntiEa |
O | 0..1 | boolean | ebv_igm_anti_ea
| ||||||
| ebvIgmAntiVca |
O | 0..1 | boolean | ebv_igm_anti_vca
| ||||||
| ebvIggAntiVca |
O | 0..1 | boolean | ebv_igg_anti_vca
| ||||||
| ebvIggEbna |
O | 0..1 | boolean | ebv_igg_ebna
| ||||||
| cmvDna |
O | 0..1 | boolean | cmv_dna
| ||||||
| cmvDnaCopies |
O | 0..1 | decimal | cmv_dna_copies
| ||||||
| cmvIgm |
O | 0..1 | boolean | cmv_igm
| ||||||
| cmvIgg |
O | 0..1 | boolean | cmv_igg
| ||||||
| parvovirusB19Dna |
O | 0..1 | boolean | parvovirus_b19_dna
| ||||||
| parvovirusB19DnaCopies |
O | 0..1 | decimal | parvovirus_b19_dna_copies
| ||||||
| parvovirusB19Igg |
O | 0..1 | boolean | parvovirus_b19_igg
| ||||||
| parvovirusB19Igm |
O | 0..1 | boolean | parvovirus_b19_igm
| ||||||
| hsvIgg |
O | 0..1 | boolean | hsv_igg
| ||||||
| hsvIgm |
O | 0..1 | boolean | hsv_igm
| ||||||
| adenovirusIgg |
O | 0..1 | boolean | adenovirus_igg
| ||||||
| adenovirusIgm |
O | 0..1 | boolean | adenovirus_igm
| ||||||
| bloodAdenovirusDna |
O | 0..1 | boolean | blood_adenovirus_dna
| ||||||
| bloodAdenovirusDnaCopies |
O | 0..1 | decimal | blood_adenovirus_dna_copies
| ||||||
| vzvIgg |
O | 0..1 | boolean | vzv_igg
| ||||||
| vzvIgm |
O | 0..1 | boolean | vzv_igm
| ||||||
| bloodBkvDna |
O | 0..1 | boolean | blood_bkv_dna
| ||||||
| bloodBkvDnaCopies |
O | 0..1 | decimal | blood_bkv_dna_copies
| ||||||
| urineBkvDna |
O | 0..1 | boolean | urine_bkv_dna
| ||||||
| bkvDnaKidneyBiopsy |
O | 0..1 | boolean | bkv_dna_kidney_biopsy
| ||||||
| bkvFishKidneyBiopsy |
O | 0..1 | boolean | bkv_fish_kidney_biopsy
| ||||||
| bloodColture |
O | 0..1 | boolean | blood_colture
| ||||||
| urineColture |
O | 0..1 | boolean | urine_colture
| ||||||
| otherPositivity |
O | 0..1 | string | other_positivity
| ||||||
| ebvHepatitisLiver |
O | 0..1 | boolean | ebv_hepatitis_liver
| ||||||
| evidenceBkvan |
O | 0..1 | code | evidence_bkvan
| ||||||
| Documentation for this format | ||||||||||
Snapshot View
| Name | Flags | Card. | Type | Description & Constraints Filter: | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| pcMicrobiologyLm |
0..* | Base | Microbiology logical model | |||||||
| microbiologyId |
O | 1..1 | string | microbiology_id
| ||||||
| visitId |
O | 1..1 | Reference(Visit logical model) | visit_id
| ||||||
| donorId |
O | 0..1 | Reference(Donor logical model) | donor_id
| ||||||
| ebvDna |
O | 0..1 | boolean | ebv_dna
| ||||||
| ebvDnaCopies |
O | 0..1 | decimal | ebv_dna_copies
| ||||||
| ebvIgmAntiEa |
O | 0..1 | boolean | ebv_igm_anti_ea
| ||||||
| ebvIgmAntiVca |
O | 0..1 | boolean | ebv_igm_anti_vca
| ||||||
| ebvIggAntiVca |
O | 0..1 | boolean | ebv_igg_anti_vca
| ||||||
| ebvIggEbna |
O | 0..1 | boolean | ebv_igg_ebna
| ||||||
| cmvDna |
O | 0..1 | boolean | cmv_dna
| ||||||
| cmvDnaCopies |
O | 0..1 | decimal | cmv_dna_copies
| ||||||
| cmvIgm |
O | 0..1 | boolean | cmv_igm
| ||||||
| cmvIgg |
O | 0..1 | boolean | cmv_igg
| ||||||
| parvovirusB19Dna |
O | 0..1 | boolean | parvovirus_b19_dna
| ||||||
| parvovirusB19DnaCopies |
O | 0..1 | decimal | parvovirus_b19_dna_copies
| ||||||
| parvovirusB19Igg |
O | 0..1 | boolean | parvovirus_b19_igg
| ||||||
| parvovirusB19Igm |
O | 0..1 | boolean | parvovirus_b19_igm
| ||||||
| hsvIgg |
O | 0..1 | boolean | hsv_igg
| ||||||
| hsvIgm |
O | 0..1 | boolean | hsv_igm
| ||||||
| adenovirusIgg |
O | 0..1 | boolean | adenovirus_igg
| ||||||
| adenovirusIgm |
O | 0..1 | boolean | adenovirus_igm
| ||||||
| bloodAdenovirusDna |
O | 0..1 | boolean | blood_adenovirus_dna
| ||||||
| bloodAdenovirusDnaCopies |
O | 0..1 | decimal | blood_adenovirus_dna_copies
| ||||||
| vzvIgg |
O | 0..1 | boolean | vzv_igg
| ||||||
| vzvIgm |
O | 0..1 | boolean | vzv_igm
| ||||||
| bloodBkvDna |
O | 0..1 | boolean | blood_bkv_dna
| ||||||
| bloodBkvDnaCopies |
O | 0..1 | decimal | blood_bkv_dna_copies
| ||||||
| urineBkvDna |
O | 0..1 | boolean | urine_bkv_dna
| ||||||
| bkvDnaKidneyBiopsy |
O | 0..1 | boolean | bkv_dna_kidney_biopsy
| ||||||
| bkvFishKidneyBiopsy |
O | 0..1 | boolean | bkv_fish_kidney_biopsy
| ||||||
| bloodColture |
O | 0..1 | boolean | blood_colture
| ||||||
| urineColture |
O | 0..1 | boolean | urine_colture
| ||||||
| otherPositivity |
O | 0..1 | string | other_positivity
| ||||||
| ebvHepatitisLiver |
O | 0..1 | boolean | ebv_hepatitis_liver
| ||||||
| evidenceBkvan |
O | 0..1 | code | evidence_bkvan
| ||||||
| Documentation for this format | ||||||||||
This structure is derived from Base