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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

Logical Model: PcMicrobiology - Mappings

Draft as of 2026-09-28

Mappings for the pcMicrobiologyLm logical model.

Mappings to Structures in this Implementation Guide

NameMicrobiologyLmToFhirMicrobiologyLmToFhirMicrobiologyLmToFhirMicrobiologyLmToFhirMicrobiologyLmToFhirMicrobiologyLmToFhirdoco
.. pcMicrobiologyLm
... microbiologyId
... visitId
Equivalent To DiagnosticReport.encounter (encounter. The recipient's Visit, also for donor results)
... donorId
Equivalent To DiagnosticReport.subject (subject. Reference(Donor) for donor results; otherwise Reference(PatientTransplant))
... ebvDna
​Equivalent To Observation.value[x] (LOINC 5002-1 — Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected)
... ebvDnaCopies
​Equivalent To Observation.value[x] (LOINC 36923-1 — Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 93840-7, 47982-4, 43730-1)
... ebvIgmAntiEa
​Equivalent To Observation.value[x] (MicrobiologyCS#ebv-ea-igm — EBV early antigen IgM Ab [Presence] in Serum. Positive / Negative. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader.)
... ebvIgmAntiVca
​Equivalent To Observation.value[x] (LOINC 30340-4 — Epstein Barr virus capsid IgM Ab [Presence] in Serum. Positive / Negative. Alternatives: 24115-8, 40751-0, 93714-4; the OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen.)
... ebvIggAntiVca
​Equivalent To Observation.value[x] (LOINC 30339-6 — Epstein Barr virus capsid IgG Ab [Presence] in Serum. Positive / Negative. Alternatives: 93713-6)
... ebvIggEbna
​Equivalent To Observation.value[x] (LOINC 7883-2 — Epstein Barr virus nuclear IgG Ab [Presence] in Serum. Positive / Negative)
... cmvDna
​Equivalent To Observation.value[x] (LOINC 4996-5 — Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected)
... cmvDnaCopies
​Equivalent To Observation.value[x] (LOINC 29604-6 — Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 100675-8, 30247-1, 72493-0)
... cmvIgm
​Equivalent To Observation.value[x] (LOINC 30325-5 — Cytomegalovirus IgM Ab [Presence] in Serum or Plasma. Positive / Negative. Alternatives: 87725-8)
... cmvIgg
​Equivalent To Observation.value[x] (LOINC 13949-3 — Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay. Positive / Negative. Alternatives: 22244-8, 87726-6)
... parvovirusB19Dna
​Equivalent To Observation.value[x] (LOINC 50348-2 — Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected. Alternatives: 75543-9)
... parvovirusB19DnaCopies
​Equivalent To Observation.value[x] (LOINC 49431-0 — Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49434-4, 74420-1)
... parvovirusB19Igg
​Equivalent To Observation.value[x] (LOINC 29675-6 — Parvovirus B19 IgG Ab [Presence] in Serum. Positive / Negative)
... parvovirusB19Igm
​Equivalent To Observation.value[x] (LOINC 7981-4 — Parvovirus B19 IgM Ab [Presence] in Serum. Positive / Negative)
... hsvIgg
​Equivalent To Observation.value[x] (LOINC 19106-4 — Herpes simplex virus IgG Ab [Presence] in Serum. Positive / Negative)
... hsvIgm
​Equivalent To Observation.value[x] (LOINC 25435-9 — Herpes simplex virus IgM Ab [Presence] in Serum. Positive / Negative)
... adenovirusIgg
​Equivalent To Observation.value[x] (LOINC 41162-9 — Adenovirus IgG Ab [Presence] in Serum. Positive / Negative)
... adenovirusIgm
​Equivalent To Observation.value[x] (LOINC 21054-2 — Adenovirus IgM Ab [Presence] in Serum. Positive / Negative)
... bloodAdenovirusDna
​Equivalent To Observation.value[x] (LOINC 86511-3 — Adenovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected)
... bloodAdenovirusDnaCopies
​Equivalent To Observation.value[x] (LOINC 49341-1 — Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49334-6, 106727-1)
... vzvIgg
​Equivalent To Observation.value[x] (LOINC 19162-7 — Varicella zoster virus IgG Ab [Presence] in Serum. Positive / Negative)
... vzvIgm
​Equivalent To Observation.value[x] (LOINC 21597-0 — Varicella zoster virus IgM Ab [Presence] in Serum. Positive / Negative)
... bloodBkvDna
​Equivalent To Observation.value[x] (LOINC 63475-8 — BK virus DNA [Presence] in Blood. Detected / Not detected)
... bloodBkvDnaCopies
​Equivalent To Observation.value[x] (LOINC 49345-2 — BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 101341-6, 41479-7, 32284-2)
... urineBkvDna
​Equivalent To Observation.value[x] (LOINC 33978-8 — BK virus DNA [Presence] in Urine by NAA with probe detection. Detected / Not detected)
... bkvDnaKidneyBiopsy
​Equivalent To Observation.value[x] (LOINC 47251-4 — BK virus DNA [Presence] in Specimen by NAA with probe detection. Detected / Not detected. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue. Kidney only)
... bkvFishKidneyBiopsy
​Equivalent To Observation.value[x] (MicrobiologyCS#bkv-dna-ish-tissue — BK virus DNA [Presence] in Tissue by in situ hybridization. Detected / Not detected. LOINC has no in-situ hybridisation code for BK virus in tissue. Kidney only)
... bloodColture
​Equivalent To Observation.value[x] (LOINC 600-7 — Bacteria identified in Blood by Culture. Organism, or Positive / Negative. Kidney only)
... urineColture
​Equivalent To Observation.value[x] (LOINC 630-4 — Bacteria identified in Urine by Culture. Organism, or Positive / Negative. Kidney only)
... otherPositivity
Equivalent To DiagnosticReport.conclusion (conclusion (free text) Kidney only)
... ebvHepatitisLiver
Related To Condition.code (SNOMED 302919001 Epstein-Barr virus hepatitis. presence = positive. Liver only. MicrobiologyDiagnosis (Condition). false → the same Condition with verificationStatus = #refuted; blank → no Condition.)
... evidenceBkvan
Related To Condition.code (SNOMED 713886006 BK virus nephropathy. presence = positive. MicrobiologyDiagnosis (Condition). No → the same Condition with verificationStatus = #refuted; Unknown or blank → no Condition.)

doco Documentation for this format

Mappings to other Structures

No Mappings Found

Other Mappings

No Mappings Found