PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
Definitions for the pcMicrobiologyLm logical model.
Guidance on how to interpret the contents of this table can be foundhere
| 0. pcMicrobiologyLm | |||||||
| Definition | Logical model for the PROTECT-CHILD microbiology table. Covers viral serology, DNA quantification, culture results, and BKVAN evidence. | ||||||
| Short | Microbiology logical model | ||||||
| Control | 0..* | ||||||
| Is Modifier | false | ||||||
| Logical Model | Instances of this logical model are not marked to be the target of a Reference | ||||||
| 2. pcMicrobiologyLm.microbiologyId | |||||||
| Definition | Microbiology record ID. | ||||||
| Short | microbiology_id | ||||||
| Control | 1..1 | ||||||
| Type | string | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 4. pcMicrobiologyLm.visitId | |||||||
| Definition | FK to visit (Mandatory). | ||||||
| Short | visit_id | ||||||
| Control | 1..1 | ||||||
| Type | Reference(Visit logical model) | ||||||
| Obligations |
| ||||||
| 6. pcMicrobiologyLm.donorId | |||||||
| Definition | FK to donor (Optional). | ||||||
| Short | donor_id | ||||||
| Control | 0..1 | ||||||
| Type | Reference(Donor logical model) | ||||||
| Obligations |
| ||||||
| 8. pcMicrobiologyLm.ebvDna | |||||||
| Definition | EBV-DNA result. | ||||||
| Short | ebv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 10. pcMicrobiologyLm.ebvDnaCopies | |||||||
| Definition | EBV-DNA copies/ml. | ||||||
| Short | ebv_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 12. pcMicrobiologyLm.ebvIgmAntiEa | |||||||
| Definition | EBV IgM anti-EA. | ||||||
| Short | ebv_igm_anti_ea | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 14. pcMicrobiologyLm.ebvIgmAntiVca | |||||||
| Definition | EBV IgM anti-VCA. | ||||||
| Short | ebv_igm_anti_vca | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 16. pcMicrobiologyLm.ebvIggAntiVca | |||||||
| Definition | EBV IgG anti-VCA. | ||||||
| Short | ebv_igg_anti_vca | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 18. pcMicrobiologyLm.ebvIggEbna | |||||||
| Definition | EBV IgG EBNA. | ||||||
| Short | ebv_igg_ebna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 20. pcMicrobiologyLm.cmvDna | |||||||
| Definition | CMV-DNA result. | ||||||
| Short | cmv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 22. pcMicrobiologyLm.cmvDnaCopies | |||||||
| Definition | CMV-DNA copies/ml. | ||||||
| Short | cmv_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 24. pcMicrobiologyLm.cmvIgm | |||||||
| Definition | CMV IgM. | ||||||
| Short | cmv_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 26. pcMicrobiologyLm.cmvIgg | |||||||
| Definition | CMV IgG. | ||||||
| Short | cmv_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 28. pcMicrobiologyLm.parvovirusB19Dna | |||||||
| Definition | Parvovirus B19 DNA. | ||||||
| Short | parvovirus_b19_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 30. pcMicrobiologyLm.parvovirusB19DnaCopies | |||||||
| Definition | Parvovirus B19 DNA copies/ml. | ||||||
| Short | parvovirus_b19_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 32. pcMicrobiologyLm.parvovirusB19Igg | |||||||
| Definition | Parvovirus B19 IgG. | ||||||
| Short | parvovirus_b19_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 34. pcMicrobiologyLm.parvovirusB19Igm | |||||||
| Definition | Parvovirus B19 IgM. | ||||||
| Short | parvovirus_b19_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 36. pcMicrobiologyLm.hsvIgg | |||||||
| Definition | HSV IgG. | ||||||
| Short | hsv_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 38. pcMicrobiologyLm.hsvIgm | |||||||
| Definition | HSV IgM. | ||||||
| Short | hsv_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 40. pcMicrobiologyLm.adenovirusIgg | |||||||
| Definition | Adenovirus IgG. | ||||||
| Short | adenovirus_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 42. pcMicrobiologyLm.adenovirusIgm | |||||||
| Definition | Adenovirus IgM. | ||||||
| Short | adenovirus_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 44. pcMicrobiologyLm.bloodAdenovirusDna | |||||||
| Definition | Blood Adenovirus DNA. | ||||||
| Short | blood_adenovirus_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 46. pcMicrobiologyLm.bloodAdenovirusDnaCopies | |||||||
| Definition | Blood Adenovirus DNA copies/ml. | ||||||
| Short | blood_adenovirus_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 48. pcMicrobiologyLm.vzvIgg | |||||||
| Definition | VZV IgG. | ||||||
| Short | vzv_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 50. pcMicrobiologyLm.vzvIgm | |||||||
| Definition | VZV IgM. | ||||||
| Short | vzv_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 52. pcMicrobiologyLm.bloodBkvDna | |||||||
| Definition | Blood BKV-DNA. | ||||||
| Short | blood_bkv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 54. pcMicrobiologyLm.bloodBkvDnaCopies | |||||||
| Definition | Blood BKV-DNA copies/ml. | ||||||
| Short | blood_bkv_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 56. pcMicrobiologyLm.urineBkvDna | |||||||
| Definition | Urine BKV-DNA. | ||||||
| Short | urine_bkv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 58. pcMicrobiologyLm.bkvDnaKidneyBiopsy | |||||||
| Definition | BKV-DNA on kidney biopsy (Kidney). | ||||||
| Short | bkv_dna_kidney_biopsy | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 60. pcMicrobiologyLm.bkvFishKidneyBiopsy | |||||||
| Definition | BKV FISH on kidney biopsy (Kidney). | ||||||
| Short | bkv_fish_kidney_biopsy | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 62. pcMicrobiologyLm.bloodColture | |||||||
| Definition | Blood culture (Kidney). | ||||||
| Short | blood_colture | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 64. pcMicrobiologyLm.urineColture | |||||||
| Definition | Urine culture (Kidney). | ||||||
| Short | urine_colture | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 66. pcMicrobiologyLm.otherPositivity | |||||||
| Definition | Other positivity (free text, Kidney). | ||||||
| Short | other_positivity | ||||||
| Control | 0..1 | ||||||
| Type | string | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 68. pcMicrobiologyLm.ebvHepatitisLiver | |||||||
| Definition | EBV hepatitis on liver (Liver). | ||||||
| Short | ebv_hepatitis_liver | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 70. pcMicrobiologyLm.evidenceBkvan | |||||||
| Definition | Histological evidence of BKVAN (No/Yes/Unknown). | ||||||
| Short | evidence_bkvan | ||||||
| Control | 0..1 | ||||||
| Type | code | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
Guidance on how to interpret the contents of this table can be foundhere
| 0. pcMicrobiologyLm | |||||||
| Definition | Logical model for the PROTECT-CHILD microbiology table. Covers viral serology, DNA quantification, culture results, and BKVAN evidence. | ||||||
| Short | Microbiology logical model | ||||||
| Logical Model | Instances of this logical model are not marked to be the target of a Reference | ||||||
| 2. pcMicrobiologyLm.microbiologyId | |||||||
| Definition | Microbiology record ID. | ||||||
| Short | microbiology_id | ||||||
| Control | 1..1 | ||||||
| Type | string | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 4. pcMicrobiologyLm.visitId | |||||||
| Definition | FK to visit (Mandatory). | ||||||
| Short | visit_id | ||||||
| Control | 1..1 | ||||||
| Type | Reference(Visit logical model) | ||||||
| Obligations |
| ||||||
| 6. pcMicrobiologyLm.donorId | |||||||
| Definition | FK to donor (Optional). | ||||||
| Short | donor_id | ||||||
| Control | 0..1 | ||||||
| Type | Reference(Donor logical model) | ||||||
| Obligations |
| ||||||
| 8. pcMicrobiologyLm.ebvDna | |||||||
| Definition | EBV-DNA result. | ||||||
| Short | ebv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 10. pcMicrobiologyLm.ebvDnaCopies | |||||||
| Definition | EBV-DNA copies/ml. | ||||||
| Short | ebv_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 12. pcMicrobiologyLm.ebvIgmAntiEa | |||||||
| Definition | EBV IgM anti-EA. | ||||||
| Short | ebv_igm_anti_ea | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 14. pcMicrobiologyLm.ebvIgmAntiVca | |||||||
| Definition | EBV IgM anti-VCA. | ||||||
| Short | ebv_igm_anti_vca | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 16. pcMicrobiologyLm.ebvIggAntiVca | |||||||
| Definition | EBV IgG anti-VCA. | ||||||
| Short | ebv_igg_anti_vca | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 18. pcMicrobiologyLm.ebvIggEbna | |||||||
| Definition | EBV IgG EBNA. | ||||||
| Short | ebv_igg_ebna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 20. pcMicrobiologyLm.cmvDna | |||||||
| Definition | CMV-DNA result. | ||||||
| Short | cmv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 22. pcMicrobiologyLm.cmvDnaCopies | |||||||
| Definition | CMV-DNA copies/ml. | ||||||
| Short | cmv_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 24. pcMicrobiologyLm.cmvIgm | |||||||
| Definition | CMV IgM. | ||||||
| Short | cmv_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 26. pcMicrobiologyLm.cmvIgg | |||||||
| Definition | CMV IgG. | ||||||
| Short | cmv_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 28. pcMicrobiologyLm.parvovirusB19Dna | |||||||
| Definition | Parvovirus B19 DNA. | ||||||
| Short | parvovirus_b19_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 30. pcMicrobiologyLm.parvovirusB19DnaCopies | |||||||
| Definition | Parvovirus B19 DNA copies/ml. | ||||||
| Short | parvovirus_b19_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 32. pcMicrobiologyLm.parvovirusB19Igg | |||||||
| Definition | Parvovirus B19 IgG. | ||||||
| Short | parvovirus_b19_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 34. pcMicrobiologyLm.parvovirusB19Igm | |||||||
| Definition | Parvovirus B19 IgM. | ||||||
| Short | parvovirus_b19_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 36. pcMicrobiologyLm.hsvIgg | |||||||
| Definition | HSV IgG. | ||||||
| Short | hsv_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 38. pcMicrobiologyLm.hsvIgm | |||||||
| Definition | HSV IgM. | ||||||
| Short | hsv_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 40. pcMicrobiologyLm.adenovirusIgg | |||||||
| Definition | Adenovirus IgG. | ||||||
| Short | adenovirus_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 42. pcMicrobiologyLm.adenovirusIgm | |||||||
| Definition | Adenovirus IgM. | ||||||
| Short | adenovirus_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 44. pcMicrobiologyLm.bloodAdenovirusDna | |||||||
| Definition | Blood Adenovirus DNA. | ||||||
| Short | blood_adenovirus_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 46. pcMicrobiologyLm.bloodAdenovirusDnaCopies | |||||||
| Definition | Blood Adenovirus DNA copies/ml. | ||||||
| Short | blood_adenovirus_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 48. pcMicrobiologyLm.vzvIgg | |||||||
| Definition | VZV IgG. | ||||||
| Short | vzv_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 50. pcMicrobiologyLm.vzvIgm | |||||||
| Definition | VZV IgM. | ||||||
| Short | vzv_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 52. pcMicrobiologyLm.bloodBkvDna | |||||||
| Definition | Blood BKV-DNA. | ||||||
| Short | blood_bkv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 54. pcMicrobiologyLm.bloodBkvDnaCopies | |||||||
| Definition | Blood BKV-DNA copies/ml. | ||||||
| Short | blood_bkv_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 56. pcMicrobiologyLm.urineBkvDna | |||||||
| Definition | Urine BKV-DNA. | ||||||
| Short | urine_bkv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 58. pcMicrobiologyLm.bkvDnaKidneyBiopsy | |||||||
| Definition | BKV-DNA on kidney biopsy (Kidney). | ||||||
| Short | bkv_dna_kidney_biopsy | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 60. pcMicrobiologyLm.bkvFishKidneyBiopsy | |||||||
| Definition | BKV FISH on kidney biopsy (Kidney). | ||||||
| Short | bkv_fish_kidney_biopsy | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 62. pcMicrobiologyLm.bloodColture | |||||||
| Definition | Blood culture (Kidney). | ||||||
| Short | blood_colture | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 64. pcMicrobiologyLm.urineColture | |||||||
| Definition | Urine culture (Kidney). | ||||||
| Short | urine_colture | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 66. pcMicrobiologyLm.otherPositivity | |||||||
| Definition | Other positivity (free text, Kidney). | ||||||
| Short | other_positivity | ||||||
| Control | 0..1 | ||||||
| Type | string | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 68. pcMicrobiologyLm.ebvHepatitisLiver | |||||||
| Definition | EBV hepatitis on liver (Liver). | ||||||
| Short | ebv_hepatitis_liver | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 70. pcMicrobiologyLm.evidenceBkvan | |||||||
| Definition | Histological evidence of BKVAN (No/Yes/Unknown). | ||||||
| Short | evidence_bkvan | ||||||
| Control | 0..1 | ||||||
| Type | code | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
Guidance on how to interpret the contents of this table can be foundhere
| 0. pcMicrobiologyLm | |||||||
| Definition | Logical model for the PROTECT-CHILD microbiology table. Covers viral serology, DNA quantification, culture results, and BKVAN evidence. | ||||||
| Short | Microbiology logical model | ||||||
| Control | 0..* | ||||||
| Is Modifier | false | ||||||
| Logical Model | Instances of this logical model are not marked to be the target of a Reference | ||||||
| 2. pcMicrobiologyLm.microbiologyId | |||||||
| Definition | Microbiology record ID. | ||||||
| Short | microbiology_id | ||||||
| Control | 1..1 | ||||||
| Type | string | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 4. pcMicrobiologyLm.visitId | |||||||
| Definition | FK to visit (Mandatory). | ||||||
| Short | visit_id | ||||||
| Control | 1..1 | ||||||
| Type | Reference(Visit logical model) | ||||||
| Obligations |
| ||||||
| 6. pcMicrobiologyLm.donorId | |||||||
| Definition | FK to donor (Optional). | ||||||
| Short | donor_id | ||||||
| Control | 0..1 | ||||||
| Type | Reference(Donor logical model) | ||||||
| Obligations |
| ||||||
| 8. pcMicrobiologyLm.ebvDna | |||||||
| Definition | EBV-DNA result. | ||||||
| Short | ebv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 10. pcMicrobiologyLm.ebvDnaCopies | |||||||
| Definition | EBV-DNA copies/ml. | ||||||
| Short | ebv_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 12. pcMicrobiologyLm.ebvIgmAntiEa | |||||||
| Definition | EBV IgM anti-EA. | ||||||
| Short | ebv_igm_anti_ea | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 14. pcMicrobiologyLm.ebvIgmAntiVca | |||||||
| Definition | EBV IgM anti-VCA. | ||||||
| Short | ebv_igm_anti_vca | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 16. pcMicrobiologyLm.ebvIggAntiVca | |||||||
| Definition | EBV IgG anti-VCA. | ||||||
| Short | ebv_igg_anti_vca | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 18. pcMicrobiologyLm.ebvIggEbna | |||||||
| Definition | EBV IgG EBNA. | ||||||
| Short | ebv_igg_ebna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 20. pcMicrobiologyLm.cmvDna | |||||||
| Definition | CMV-DNA result. | ||||||
| Short | cmv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 22. pcMicrobiologyLm.cmvDnaCopies | |||||||
| Definition | CMV-DNA copies/ml. | ||||||
| Short | cmv_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 24. pcMicrobiologyLm.cmvIgm | |||||||
| Definition | CMV IgM. | ||||||
| Short | cmv_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 26. pcMicrobiologyLm.cmvIgg | |||||||
| Definition | CMV IgG. | ||||||
| Short | cmv_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 28. pcMicrobiologyLm.parvovirusB19Dna | |||||||
| Definition | Parvovirus B19 DNA. | ||||||
| Short | parvovirus_b19_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 30. pcMicrobiologyLm.parvovirusB19DnaCopies | |||||||
| Definition | Parvovirus B19 DNA copies/ml. | ||||||
| Short | parvovirus_b19_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 32. pcMicrobiologyLm.parvovirusB19Igg | |||||||
| Definition | Parvovirus B19 IgG. | ||||||
| Short | parvovirus_b19_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 34. pcMicrobiologyLm.parvovirusB19Igm | |||||||
| Definition | Parvovirus B19 IgM. | ||||||
| Short | parvovirus_b19_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 36. pcMicrobiologyLm.hsvIgg | |||||||
| Definition | HSV IgG. | ||||||
| Short | hsv_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 38. pcMicrobiologyLm.hsvIgm | |||||||
| Definition | HSV IgM. | ||||||
| Short | hsv_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 40. pcMicrobiologyLm.adenovirusIgg | |||||||
| Definition | Adenovirus IgG. | ||||||
| Short | adenovirus_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 42. pcMicrobiologyLm.adenovirusIgm | |||||||
| Definition | Adenovirus IgM. | ||||||
| Short | adenovirus_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 44. pcMicrobiologyLm.bloodAdenovirusDna | |||||||
| Definition | Blood Adenovirus DNA. | ||||||
| Short | blood_adenovirus_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 46. pcMicrobiologyLm.bloodAdenovirusDnaCopies | |||||||
| Definition | Blood Adenovirus DNA copies/ml. | ||||||
| Short | blood_adenovirus_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 48. pcMicrobiologyLm.vzvIgg | |||||||
| Definition | VZV IgG. | ||||||
| Short | vzv_igg | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 50. pcMicrobiologyLm.vzvIgm | |||||||
| Definition | VZV IgM. | ||||||
| Short | vzv_igm | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 52. pcMicrobiologyLm.bloodBkvDna | |||||||
| Definition | Blood BKV-DNA. | ||||||
| Short | blood_bkv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 54. pcMicrobiologyLm.bloodBkvDnaCopies | |||||||
| Definition | Blood BKV-DNA copies/ml. | ||||||
| Short | blood_bkv_dna_copies | ||||||
| Control | 0..1 | ||||||
| Type | decimal | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 56. pcMicrobiologyLm.urineBkvDna | |||||||
| Definition | Urine BKV-DNA. | ||||||
| Short | urine_bkv_dna | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 58. pcMicrobiologyLm.bkvDnaKidneyBiopsy | |||||||
| Definition | BKV-DNA on kidney biopsy (Kidney). | ||||||
| Short | bkv_dna_kidney_biopsy | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 60. pcMicrobiologyLm.bkvFishKidneyBiopsy | |||||||
| Definition | BKV FISH on kidney biopsy (Kidney). | ||||||
| Short | bkv_fish_kidney_biopsy | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 62. pcMicrobiologyLm.bloodColture | |||||||
| Definition | Blood culture (Kidney). | ||||||
| Short | blood_colture | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 64. pcMicrobiologyLm.urineColture | |||||||
| Definition | Urine culture (Kidney). | ||||||
| Short | urine_colture | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 66. pcMicrobiologyLm.otherPositivity | |||||||
| Definition | Other positivity (free text, Kidney). | ||||||
| Short | other_positivity | ||||||
| Control | 0..1 | ||||||
| Type | string | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 68. pcMicrobiologyLm.ebvHepatitisLiver | |||||||
| Definition | EBV hepatitis on liver (Liver). | ||||||
| Short | ebv_hepatitis_liver | ||||||
| Control | 0..1 | ||||||
| Type | boolean | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||
| 70. pcMicrobiologyLm.evidenceBkvan | |||||||
| Definition | Histological evidence of BKVAN (No/Yes/Unknown). | ||||||
| Short | evidence_bkvan | ||||||
| Control | 0..1 | ||||||
| Type | code | ||||||
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension | ||||||
| Obligations |
| ||||||