PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
{
"resourceType" : "ConceptMap",
"id" : "dm-imm-pat-to-omop",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap dm-imm-pat-to-omop</b></p><a name=\"dm-imm-pat-to-omop\"> </a><a name=\"hcdm-imm-pat-to-omop\"> </a><p>This mapping does not specify any particular context of use.</p><br/><p>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\">OHDSI Standardized Vocabularies</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td><td><b>Comment</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-dm-variable-cs.html\" title=\"https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs\">PROTECT-CHILD Data Model Variables</a></td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\" title=\"https://fhir-terminology.ohdsi.org\">OHDSI Standardized Vocabularies</a></td><td/></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">imm_pat.phase</td><td style=\"border-left-width: 0px; border-bottom-style: none\">imm_pat.phase</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">905623</td><td style=\"border-left-width: 0px\">Induction</td><td>OMOP OBSERVATION.qualifier_concept_id; vocabulary HemOnc.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">763393</td><td style=\"border-left-width: 0px\">Maintenance dose</td><td>OMOP OBSERVATION.qualifier_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px\">imm_pat.dose</td><td style=\"border-left-width: 0px\">imm_pat.dose</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">4162374</td><td style=\"border-left-width: 0px\">Drug dose</td><td>OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">imm_pat.pre_dose_level</td><td style=\"border-left-width: 0px; border-bottom-style: none\">imm_pat.pre_dose_level</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">46236053</td><td style=\"border-left-width: 0px\">Tacrolimus [Mass/volume] in Blood --trough</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">3042505</td><td style=\"border-left-width: 0px\">cycloSPORINE [Mass/volume] in Blood --trough</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">46236054</td><td style=\"border-left-width: 0px\">Everolimus [Mass/volume] in Blood by LC/MS/MS --trough</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">43055501</td><td style=\"border-left-width: 0px\">Mycophenolate [Mass/volume] in Serum or Plasma --trough</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px\">imm_pat.csa_2h_post_dose_level</td><td style=\"border-left-width: 0px\">imm_pat.csa_2h_post_dose_level</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3046333</td><td style=\"border-left-width: 0px\">cycloSPORINE [Mass/volume] in Blood --2 hours post dose</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">imm_pat.auc</td><td style=\"border-left-width: 0px; border-bottom-style: none\">imm_pat.auc</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">37020458</td><td style=\"border-left-width: 0px\">Tacrolimus [AUC] in Blood</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">1989318</td><td style=\"border-left-width: 0px\">cycloSPORINE [AUC] in Blood</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">2000000022</td><td style=\"border-left-width: 0px\">Measured AUC for [drug]</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">imm_pat.unit</td><td style=\"border-left-width: 0px; border-bottom-style: none\">imm_pat.unit</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">9562</td><td style=\"border-left-width: 0px\">milligram per kilogram</td><td>OMOP OBSERVATION.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">9563</td><td style=\"border-left-width: 0px\">milligram per square meter</td><td>OMOP OBSERVATION.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">8576</td><td style=\"border-left-width: 0px\">milligram</td><td>OMOP OBSERVATION.unit_concept_id; vocabulary UCUM.</td></tr></table></div>"
},
"url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-imm-pat-to-omop",
"version" : "0.1.0-ci-build",
"name" : "DmImmPatToOmop",
"title" : "DM imm_pat → OMOP",
"status" : "draft",
"experimental" : false,
"date" : "2026-09-28T06:51:47+00:00",
"publisher" : "Protect Child",
"contact" : [
{
"name" : "Protect Child",
"telecom" : [
{
"system" : "url",
"value" : "https://protect-child.eu/"
}
]
}
],
"description" : "The OMOP concepts for each column of the DMv1.2 imm_pat table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary). Pending (not yet in Athena): pre_dose_level (115766-8); auc (115789-0).",
"group" : [
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
"target" : "https://fhir-terminology.ohdsi.org",
"element" : [
{
"code" : "imm_pat.phase",
"target" : [
{
"code" : "905623",
"display" : "Induction",
"equivalence" : "relatedto",
"comment" : "OMOP OBSERVATION.qualifier_concept_id; vocabulary HemOnc."
},
{
"code" : "763393",
"display" : "Maintenance dose",
"equivalence" : "relatedto",
"comment" : "OMOP OBSERVATION.qualifier_concept_id; vocabulary SNOMED."
}
]
},
{
"code" : "imm_pat.dose",
"target" : [
{
"code" : "4162374",
"display" : "Drug dose",
"equivalence" : "equivalent",
"comment" : "OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED."
}
]
},
{
"code" : "imm_pat.pre_dose_level",
"target" : [
{
"code" : "46236053",
"display" : "Tacrolimus [Mass/volume] in Blood --trough",
"equivalence" : "narrower",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
},
{
"code" : "3042505",
"display" : "cycloSPORINE [Mass/volume] in Blood --trough",
"equivalence" : "narrower",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
},
{
"code" : "46236054",
"display" : "Everolimus [Mass/volume] in Blood by LC/MS/MS --trough",
"equivalence" : "narrower",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
},
{
"code" : "43055501",
"display" : "Mycophenolate [Mass/volume] in Serum or Plasma --trough",
"equivalence" : "narrower",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
}
]
},
{
"code" : "imm_pat.csa_2h_post_dose_level",
"target" : [
{
"code" : "3046333",
"display" : "cycloSPORINE [Mass/volume] in Blood --2 hours post dose",
"equivalence" : "equivalent",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
}
]
},
{
"code" : "imm_pat.auc",
"target" : [
{
"code" : "37020458",
"display" : "Tacrolimus [AUC] in Blood",
"equivalence" : "narrower",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
},
{
"code" : "1989318",
"display" : "cycloSPORINE [AUC] in Blood",
"equivalence" : "narrower",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
},
{
"code" : "2000000022",
"display" : "Measured AUC for [drug]",
"equivalence" : "narrower",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
}
]
},
{
"code" : "imm_pat.unit",
"target" : [
{
"code" : "9562",
"display" : "milligram per kilogram",
"equivalence" : "relatedto",
"comment" : "OMOP OBSERVATION.unit_concept_id; vocabulary UCUM."
},
{
"code" : "9563",
"display" : "milligram per square meter",
"equivalence" : "relatedto",
"comment" : "OMOP OBSERVATION.unit_concept_id; vocabulary UCUM."
},
{
"code" : "8576",
"display" : "milligram",
"equivalence" : "relatedto",
"comment" : "OMOP OBSERVATION.unit_concept_id; vocabulary UCUM."
}
]
}
]
}
]
}