{ "resourceType" : "ConceptMap", "id" : "dm-imm-pat-to-omop", "text" : { "status" : "generated", "div" : "

Generated Narrative: ConceptMap dm-imm-pat-to-omop

This mapping does not specify any particular context of use.


Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies

Source Concept DetailsRelationshipTarget Concept DetailsComment
Codes from PROTECT-CHILD Data Model VariablesCodes from OHDSI Standardized Vocabularies
imm_pat.phaseimm_pat.phaseis related to905623InductionOMOP OBSERVATION.qualifier_concept_id; vocabulary HemOnc.
is related to763393Maintenance doseOMOP OBSERVATION.qualifier_concept_id; vocabulary SNOMED.
imm_pat.doseimm_pat.doseis equivalent to4162374Drug doseOMOP OBSERVATION.observation_concept_id; vocabulary SNOMED.
imm_pat.pre_dose_levelimm_pat.pre_dose_levelnarrower46236053Tacrolimus [Mass/volume] in Blood --troughOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
narrower3042505cycloSPORINE [Mass/volume] in Blood --troughOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
narrower46236054Everolimus [Mass/volume] in Blood by LC/MS/MS --troughOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
narrower43055501Mycophenolate [Mass/volume] in Serum or Plasma --troughOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
imm_pat.csa_2h_post_dose_levelimm_pat.csa_2h_post_dose_levelis equivalent to3046333cycloSPORINE [Mass/volume] in Blood --2 hours post doseOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
imm_pat.aucimm_pat.aucnarrower37020458Tacrolimus [AUC] in BloodOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
narrower1989318cycloSPORINE [AUC] in BloodOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
narrower2000000022Measured AUC for [drug]OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
imm_pat.unitimm_pat.unitis related to9562milligram per kilogramOMOP OBSERVATION.unit_concept_id; vocabulary UCUM.
is related to9563milligram per square meterOMOP OBSERVATION.unit_concept_id; vocabulary UCUM.
is related to8576milligramOMOP OBSERVATION.unit_concept_id; vocabulary UCUM.
" }, "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-imm-pat-to-omop", "version" : "0.1.0-ci-build", "name" : "DmImmPatToOmop", "title" : "DM imm_pat → OMOP", "status" : "draft", "experimental" : false, "date" : "2026-09-28T06:51:47+00:00", "publisher" : "Protect Child", "contact" : [{ "name" : "Protect Child", "telecom" : [{ "system" : "url", "value" : "https://protect-child.eu/" }] }], "description" : "The OMOP concepts for each column of the DMv1.2 imm_pat table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary). Pending (not yet in Athena): pre_dose_level (115766-8); auc (115789-0).", "group" : [{ "source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs", "target" : "https://fhir-terminology.ohdsi.org", "element" : [{ "code" : "imm_pat.phase", "target" : [{ "code" : "905623", "display" : "Induction", "equivalence" : "relatedto", "comment" : "OMOP OBSERVATION.qualifier_concept_id; vocabulary HemOnc." }, { "code" : "763393", "display" : "Maintenance dose", "equivalence" : "relatedto", "comment" : "OMOP OBSERVATION.qualifier_concept_id; vocabulary SNOMED." }] }, { "code" : "imm_pat.dose", "target" : [{ "code" : "4162374", "display" : "Drug dose", "equivalence" : "equivalent", "comment" : "OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED." }] }, { "code" : "imm_pat.pre_dose_level", "target" : [{ "code" : "46236053", "display" : "Tacrolimus [Mass/volume] in Blood --trough", "equivalence" : "narrower", "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." }, { "code" : "3042505", "display" : "cycloSPORINE [Mass/volume] in Blood --trough", "equivalence" : "narrower", "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." }, { "code" : "46236054", "display" : "Everolimus [Mass/volume] in Blood by LC/MS/MS --trough", "equivalence" : "narrower", "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." }, { "code" : "43055501", "display" : "Mycophenolate [Mass/volume] in Serum or Plasma --trough", "equivalence" : "narrower", "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." }] }, { "code" : "imm_pat.csa_2h_post_dose_level", "target" : [{ "code" : "3046333", "display" : "cycloSPORINE [Mass/volume] in Blood --2 hours post dose", "equivalence" : "equivalent", "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." }] }, { "code" : "imm_pat.auc", "target" : [{ "code" : "37020458", "display" : "Tacrolimus [AUC] in Blood", "equivalence" : "narrower", "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." }, { "code" : "1989318", "display" : "cycloSPORINE [AUC] in Blood", "equivalence" : "narrower", "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." }, { "code" : "2000000022", "display" : "Measured AUC for [drug]", "equivalence" : "narrower", "comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD." }] }, { "code" : "imm_pat.unit", "target" : [{ "code" : "9562", "display" : "milligram per kilogram", "equivalence" : "relatedto", "comment" : "OMOP OBSERVATION.unit_concept_id; vocabulary UCUM." }, { "code" : "9563", "display" : "milligram per square meter", "equivalence" : "relatedto", "comment" : "OMOP OBSERVATION.unit_concept_id; vocabulary UCUM." }, { "code" : "8576", "display" : "milligram", "equivalence" : "relatedto", "comment" : "OMOP OBSERVATION.unit_concept_id; vocabulary UCUM." }] }] }] }