DM imm_pat → OMOP - TTL Representation - PROTECT-CHILD Pediatric Transplant Data Implementation Guide v0.1.0-ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
: DM imm_pat → OMOP - TTL Representation

Draft as of 2026-09-28
Raw ttl | Download

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/ConceptMap/dm-imm-pat-to-omop> a fhir:ConceptMap ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "dm-imm-pat-to-omop"] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap dm-imm-pat-to-omop</b></p><a name=\"dm-imm-pat-to-omop\"> </a><a name=\"hcdm-imm-pat-to-omop\"> </a><p>This mapping does not specify any particular context of use.</p><br/><p>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\">OHDSI Standardized Vocabularies</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td><td><b>Comment</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-dm-variable-cs.html\" title=\"https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs\">PROTECT-CHILD Data Model Variables</a></td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\" title=\"https://fhir-terminology.ohdsi.org\">OHDSI Standardized Vocabularies</a></td><td/></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">imm_pat.phase</td><td style=\"border-left-width: 0px; border-bottom-style: none\">imm_pat.phase</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">905623</td><td style=\"border-left-width: 0px\">Induction</td><td>OMOP OBSERVATION.qualifier_concept_id; vocabulary HemOnc.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">763393</td><td style=\"border-left-width: 0px\">Maintenance dose</td><td>OMOP OBSERVATION.qualifier_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px\">imm_pat.dose</td><td style=\"border-left-width: 0px\">imm_pat.dose</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">4162374</td><td style=\"border-left-width: 0px\">Drug dose</td><td>OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">imm_pat.pre_dose_level</td><td style=\"border-left-width: 0px; border-bottom-style: none\">imm_pat.pre_dose_level</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">46236053</td><td style=\"border-left-width: 0px\">Tacrolimus [Mass/volume] in Blood --trough</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">3042505</td><td style=\"border-left-width: 0px\">cycloSPORINE [Mass/volume] in Blood --trough</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">46236054</td><td style=\"border-left-width: 0px\">Everolimus [Mass/volume] in Blood by LC/MS/MS --trough</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">43055501</td><td style=\"border-left-width: 0px\">Mycophenolate [Mass/volume] in Serum or Plasma --trough</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px\">imm_pat.csa_2h_post_dose_level</td><td style=\"border-left-width: 0px\">imm_pat.csa_2h_post_dose_level</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">3046333</td><td style=\"border-left-width: 0px\">cycloSPORINE [Mass/volume] in Blood --2 hours post dose</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">imm_pat.auc</td><td style=\"border-left-width: 0px; border-bottom-style: none\">imm_pat.auc</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">37020458</td><td style=\"border-left-width: 0px\">Tacrolimus [AUC] in Blood</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">1989318</td><td style=\"border-left-width: 0px\">cycloSPORINE [AUC] in Blood</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">2000000022</td><td style=\"border-left-width: 0px\">Measured AUC for [drug]</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">imm_pat.unit</td><td style=\"border-left-width: 0px; border-bottom-style: none\">imm_pat.unit</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">9562</td><td style=\"border-left-width: 0px\">milligram per kilogram</td><td>OMOP OBSERVATION.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">9563</td><td style=\"border-left-width: 0px\">milligram per square meter</td><td>OMOP OBSERVATION.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">8576</td><td style=\"border-left-width: 0px\">milligram</td><td>OMOP OBSERVATION.unit_concept_id; vocabulary UCUM.</td></tr></table></div>"
  ] ;
  fhir:ConceptMap.url [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-imm-pat-to-omop"] ;
  fhir:ConceptMap.version [ fhir:value "0.1.0-ci-build"] ;
  fhir:ConceptMap.name [ fhir:value "DmImmPatToOmop"] ;
  fhir:ConceptMap.title [ fhir:value "DM imm_pat → OMOP"] ;
  fhir:ConceptMap.status [ fhir:value "draft"] ;
  fhir:ConceptMap.experimental [ fhir:value "false"^^xsd:boolean] ;
  fhir:ConceptMap.date [ fhir:value "2026-09-28T06:51:47+00:00"^^xsd:dateTime] ;
  fhir:ConceptMap.publisher [ fhir:value "Protect Child"] ;
  fhir:ConceptMap.contact [
     fhir:index 0 ;
     fhir:ContactDetail.name [ fhir:value "Protect Child" ] ;
     fhir:ContactDetail.telecom [
       fhir:index 0 ;
       fhir:ContactPoint.system [ fhir:value "url" ] ;
       fhir:ContactPoint.value [ fhir:value "https://protect-child.eu/" ]
     ]
  ] ;
  fhir:ConceptMap.description [ fhir:value "The OMOP concepts for each column of the DMv1.2 imm_pat table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary). Pending (not yet in Athena): pre_dose_level (115766-8); auc (115789-0)."] ;
  fhir:ConceptMap.group [
     fhir:index 0 ;
     fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs" ] ;
     fhir:ConceptMap.group.target [ fhir:value "https://fhir-terminology.ohdsi.org" ] ;
     fhir:ConceptMap.group.element [
       fhir:index 0 ;
       fhir:ConceptMap.group.element.code [ fhir:value "imm_pat.phase" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "905623" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "Induction" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.qualifier_concept_id; vocabulary HemOnc." ]
       ], [
         fhir:index 1 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "763393" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "Maintenance dose" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.qualifier_concept_id; vocabulary SNOMED." ]
       ]
     ], [
       fhir:index 1 ;
       fhir:ConceptMap.group.element.code [ fhir:value "imm_pat.dose" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "4162374" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "Drug dose" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED." ]
       ]
     ], [
       fhir:index 2 ;
       fhir:ConceptMap.group.element.code [ fhir:value "imm_pat.pre_dose_level" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "46236053" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "Tacrolimus [Mass/volume] in Blood --trough" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." ]
       ], [
         fhir:index 1 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "3042505" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "cycloSPORINE [Mass/volume] in Blood --trough" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." ]
       ], [
         fhir:index 2 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "46236054" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "Everolimus [Mass/volume] in Blood by LC/MS/MS --trough" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." ]
       ], [
         fhir:index 3 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "43055501" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "Mycophenolate [Mass/volume] in Serum or Plasma --trough" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." ]
       ]
     ], [
       fhir:index 3 ;
       fhir:ConceptMap.group.element.code [ fhir:value "imm_pat.csa_2h_post_dose_level" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "3046333" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "cycloSPORINE [Mass/volume] in Blood --2 hours post dose" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." ]
       ]
     ], [
       fhir:index 4 ;
       fhir:ConceptMap.group.element.code [ fhir:value "imm_pat.auc" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "37020458" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "Tacrolimus [AUC] in Blood" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." ]
       ], [
         fhir:index 1 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "1989318" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "cycloSPORINE [AUC] in Blood" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC." ]
       ], [
         fhir:index 2 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "2000000022" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "Measured AUC for [drug]" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD." ]
       ]
     ], [
       fhir:index 5 ;
       fhir:ConceptMap.group.element.code [ fhir:value "imm_pat.unit" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "9562" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "milligram per kilogram" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.unit_concept_id; vocabulary UCUM." ]
       ], [
         fhir:index 1 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "9563" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "milligram per square meter" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.unit_concept_id; vocabulary UCUM." ]
       ], [
         fhir:index 2 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "8576" ] ;
         fhir:ConceptMap.group.element.target.display [ fhir:value "milligram" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.unit_concept_id; vocabulary UCUM." ]
       ]
     ]
  ] .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/ConceptMap/dm-imm-pat-to-omop.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/ConceptMap/dm-imm-pat-to-omop.ttl> .
IG © 2025 Protect Child. Package hl7.eu.fhir.protect-child#0.1.0-ci-build based on FHIR 4.0.1. Generated 2026-09-28
Links: Table of Contents | QA Report