PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Official URL: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ValueSet/dm-microbiology-variable-vs | Version: 0.1.0-ci-build | |||
| Draft as of 2026-09-28 | Computable Name: DmMicrobiologyVariableVS | |||
The columns of the DMv1.2 microbiology table, as DmVariableCS codes. Source value set of ConceptMap DmMicrobiologyToFhir.
References
This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs version 📦0.1.0-ci-build| Code | Display | Definition | DM microbiology columns → FHIR test codes |
| microbiology.ebv_dna | microbiology.ebv_dna | DMv1.2 column microbiology.ebv_dna: EBV nucleic acid test result. | ~5002-1(MicrobiologyNucleicAcid.code) |
| microbiology.ebv_dna_copies | microbiology.ebv_dna_copies | DMv1.2 column microbiology.ebv_dna_copies: EBV-DNA (copies/ml). | ~36923-1(MicrobiologyViralLoad.code) |
| microbiology.ebv_igm_anti_ea | microbiology.ebv_igm_anti_ea | DMv1.2 column microbiology.ebv_igm_anti_ea: Presence of IgM antibodies against Epstein–Barr virus Early Antigen (EA). | ~ebv-ea-igm(MicrobiologySerology.code. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader.) |
| microbiology.ebv_igm_anti_vca | microbiology.ebv_igm_anti_vca | DMv1.2 column microbiology.ebv_igm_anti_vca: Presence of IgM antibodies against EBV Viral Capsid Antigen (VCA). | ~30340-4(MicrobiologySerology.code. The OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen.) |
| microbiology.ebv_igg_anti_vca | microbiology.ebv_igg_anti_vca | DMv1.2 column microbiology.ebv_igg_anti_vca: Presence of IgG antibodies against EBV Viral Capsid Antigen (VCA). | ~30339-6(MicrobiologySerology.code) |
| microbiology.ebv_igg_ebna | microbiology.ebv_igg_ebna | DMv1.2 column microbiology.ebv_igg_ebna: Presence of IgG antibodies against EBV Nuclear Antigen (EBNA). | ~7883-2(MicrobiologySerology.code) |
| microbiology.cmv_dna | microbiology.cmv_dna | DMv1.2 column microbiology.cmv_dna: CMV nucleic acid test result. | ~4996-5(MicrobiologyNucleicAcid.code) |
| microbiology.cmv_dna_copies | microbiology.cmv_dna_copies | DMv1.2 column microbiology.cmv_dna_copies: CMV-DNA (copies/ml). | ~29604-6(MicrobiologyViralLoad.code) |
| microbiology.cmv_igm | microbiology.cmv_igm | DMv1.2 column microbiology.cmv_igm: Presence of IgM antibodies against cytomegalovirus (CMV). | ~30325-5(MicrobiologySerology.code) |
| microbiology.cmv_igg | microbiology.cmv_igg | DMv1.2 column microbiology.cmv_igg: Presence of IgG antibodies against cytomegalovirus (CMV). | ~13949-3(MicrobiologySerology.code) |
| microbiology.parvovirus_b19_dna | microbiology.parvovirus_b19_dna | DMv1.2 column microbiology.parvovirus_b19_dna: Detection of parvovirus B19 DNA in the patient’s blood. | ~50348-2(MicrobiologyNucleicAcid.code) |
| microbiology.parvovirus_b19_dna_copies | microbiology.parvovirus_b19_dna_copies | DMv1.2 column microbiology.parvovirus_b19_dna_copies: Blood Parvovirus B19 DNA (copies/ml). | ~49431-0(MicrobiologyViralLoad.code) |
| microbiology.parvovirus_b19_igg | microbiology.parvovirus_b19_igg | DMv1.2 column microbiology.parvovirus_b19_igg: Presence of IgG antibodies to parvovirus B19. | ~29675-6(MicrobiologySerology.code) |
| microbiology.parvovirus_b19_igm | microbiology.parvovirus_b19_igm | DMv1.2 column microbiology.parvovirus_b19_igm: Presence of IgM antibodies to parvovirus B19. | ~7981-4(MicrobiologySerology.code) |
| microbiology.hsv_igg | microbiology.hsv_igg | DMv1.2 column microbiology.hsv_igg: Presence of IgG antibodies to herpes simplex virus (HSV). | ~19106-4(MicrobiologySerology.code) |
| microbiology.hsv_igm | microbiology.hsv_igm | DMv1.2 column microbiology.hsv_igm: Presence of IgM antibodies to HSV. | ~25435-9(MicrobiologySerology.code) |
| microbiology.adenovirus_igg | microbiology.adenovirus_igg | DMv1.2 column microbiology.adenovirus_igg: Presence of IgG antibodies to adenovirus. | ~41162-9(MicrobiologySerology.code) |
| microbiology.adenovirus_igm | microbiology.adenovirus_igm | DMv1.2 column microbiology.adenovirus_igm: Presence of IgM antibodies to adenovirus. | ~21054-2(MicrobiologySerology.code) |
| microbiology.blood_adenovirus_dna | microbiology.blood_adenovirus_dna | DMv1.2 column microbiology.blood_adenovirus_dna: Blood Adenovirus DNA Result. | ~86511-3(MicrobiologyNucleicAcid.code) |
| microbiology.blood_adenovirus_dna_copies | microbiology.blood_adenovirus_dna_copies | DMv1.2 column microbiology.blood_adenovirus_dna_copies: Blood Adenovirus DNA (copies/ml). | ~49341-1(MicrobiologyViralLoad.code) |
| microbiology.vzv_igg | microbiology.vzv_igg | DMv1.2 column microbiology.vzv_igg: Presence of IgG antibodies to varicella–zoster virus. | ~19162-7(MicrobiologySerology.code) |
| microbiology.vzv_igm | microbiology.vzv_igm | DMv1.2 column microbiology.vzv_igm: Presence of IgM antibodies to varicella–zoster virus. | ~21597-0(MicrobiologySerology.code) |
| microbiology.blood_bkv_dna | microbiology.blood_bkv_dna | DMv1.2 column microbiology.blood_bkv_dna: Blood BKV-DNA. | ~63475-8(MicrobiologyNucleicAcid.code) |
| microbiology.blood_bkv_dna_copies | microbiology.blood_bkv_dna_copies | DMv1.2 column microbiology.blood_bkv_dna_copies: Blood BKV-DNA (copies/ml). | ~49345-2(MicrobiologyViralLoad.code) |
| microbiology.urine_bkv_dna | microbiology.urine_bkv_dna | DMv1.2 column microbiology.urine_bkv_dna: Urine BKV-DNA. | ~33978-8(MicrobiologyNucleicAcid.code) |
| microbiology.bkv_dna_kidney_biopsy | microbiology.bkv_dna_kidney_biopsy | DMv1.2 column microbiology.bkv_dna_kidney_biopsy: BKV-DNA on kidney biopsy. | ~47251-4(MicrobiologyNucleicAcid.code. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue.) |
| microbiology.bkv_fish_kidney_biopsy | microbiology.bkv_fish_kidney_biopsy | DMv1.2 column microbiology.bkv_fish_kidney_biopsy: BKV FISH on kidney biopsy. | ~bkv-dna-ish-tissue(MicrobiologyNucleicAcid.code. LOINC has no in-situ hybridisation code for BK virus in tissue.) |
| microbiology.blood_colture | microbiology.blood_colture | DMv1.2 column microbiology.blood_colture: Blood colture. | ~600-7(MicrobiologyCulture.code) |
| microbiology.urine_colture | microbiology.urine_colture | DMv1.2 column microbiology.urine_colture: Urine colture. | ~630-4(MicrobiologyCulture.code) |
| microbiology.other_positivity | microbiology.other_positivity | DMv1.2 column microbiology.other_positivity: Other positivity. | |
| microbiology.ebv_hepatitis_liver | microbiology.ebv_hepatitis_liver | DMv1.2 column microbiology.ebv_hepatitis_liver: EBV-Hepatitis on liver. | ~ebv-hepatitis-liver(MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); false → the same Condition with verificationStatus #refuted; blank → no Condition.) |
| microbiology.evidence_bkvan | microbiology.evidence_bkvan | DMv1.2 column microbiology.evidence_bkvan: Histological evidence of BKVAN. | ~evidence-bkvan(MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); No → the same Condition with verificationStatus #refuted; Unknown or blank → no Condition.) |
Expansion performed internally based on codesystem PROTECT-CHILD Data Model Variables v0.1.0-ci-build (CodeSystem)
This value set contains 32 concepts
| System | Code | Display (en) | Definition | DM microbiology columns → FHIR test codes | JSON | XML |
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.ebv_dna | microbiology.ebv_dna | DMv1.2 column microbiology.ebv_dna: EBV nucleic acid test result. | ~5002-1(MicrobiologyNucleicAcid.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.ebv_dna_copies | microbiology.ebv_dna_copies | DMv1.2 column microbiology.ebv_dna_copies: EBV-DNA (copies/ml). | ~36923-1(MicrobiologyViralLoad.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.ebv_igm_anti_ea | microbiology.ebv_igm_anti_ea | DMv1.2 column microbiology.ebv_igm_anti_ea: Presence of IgM antibodies against Epstein–Barr virus Early Antigen (EA). | ~ebv-ea-igm(MicrobiologySerology.code. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader.) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.ebv_igm_anti_vca | microbiology.ebv_igm_anti_vca | DMv1.2 column microbiology.ebv_igm_anti_vca: Presence of IgM antibodies against EBV Viral Capsid Antigen (VCA). | ~30340-4(MicrobiologySerology.code. The OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen.) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.ebv_igg_anti_vca | microbiology.ebv_igg_anti_vca | DMv1.2 column microbiology.ebv_igg_anti_vca: Presence of IgG antibodies against EBV Viral Capsid Antigen (VCA). | ~30339-6(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.ebv_igg_ebna | microbiology.ebv_igg_ebna | DMv1.2 column microbiology.ebv_igg_ebna: Presence of IgG antibodies against EBV Nuclear Antigen (EBNA). | ~7883-2(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.cmv_dna | microbiology.cmv_dna | DMv1.2 column microbiology.cmv_dna: CMV nucleic acid test result. | ~4996-5(MicrobiologyNucleicAcid.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.cmv_dna_copies | microbiology.cmv_dna_copies | DMv1.2 column microbiology.cmv_dna_copies: CMV-DNA (copies/ml). | ~29604-6(MicrobiologyViralLoad.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.cmv_igm | microbiology.cmv_igm | DMv1.2 column microbiology.cmv_igm: Presence of IgM antibodies against cytomegalovirus (CMV). | ~30325-5(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.cmv_igg | microbiology.cmv_igg | DMv1.2 column microbiology.cmv_igg: Presence of IgG antibodies against cytomegalovirus (CMV). | ~13949-3(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.parvovirus_b19_dna | microbiology.parvovirus_b19_dna | DMv1.2 column microbiology.parvovirus_b19_dna: Detection of parvovirus B19 DNA in the patient’s blood. | ~50348-2(MicrobiologyNucleicAcid.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.parvovirus_b19_dna_copies | microbiology.parvovirus_b19_dna_copies | DMv1.2 column microbiology.parvovirus_b19_dna_copies: Blood Parvovirus B19 DNA (copies/ml). | ~49431-0(MicrobiologyViralLoad.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.parvovirus_b19_igg | microbiology.parvovirus_b19_igg | DMv1.2 column microbiology.parvovirus_b19_igg: Presence of IgG antibodies to parvovirus B19. | ~29675-6(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.parvovirus_b19_igm | microbiology.parvovirus_b19_igm | DMv1.2 column microbiology.parvovirus_b19_igm: Presence of IgM antibodies to parvovirus B19. | ~7981-4(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.hsv_igg | microbiology.hsv_igg | DMv1.2 column microbiology.hsv_igg: Presence of IgG antibodies to herpes simplex virus (HSV). | ~19106-4(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.hsv_igm | microbiology.hsv_igm | DMv1.2 column microbiology.hsv_igm: Presence of IgM antibodies to HSV. | ~25435-9(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.adenovirus_igg | microbiology.adenovirus_igg | DMv1.2 column microbiology.adenovirus_igg: Presence of IgG antibodies to adenovirus. | ~41162-9(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.adenovirus_igm | microbiology.adenovirus_igm | DMv1.2 column microbiology.adenovirus_igm: Presence of IgM antibodies to adenovirus. | ~21054-2(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.blood_adenovirus_dna | microbiology.blood_adenovirus_dna | DMv1.2 column microbiology.blood_adenovirus_dna: Blood Adenovirus DNA Result. | ~86511-3(MicrobiologyNucleicAcid.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.blood_adenovirus_dna_copies | microbiology.blood_adenovirus_dna_copies | DMv1.2 column microbiology.blood_adenovirus_dna_copies: Blood Adenovirus DNA (copies/ml). | ~49341-1(MicrobiologyViralLoad.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.vzv_igg | microbiology.vzv_igg | DMv1.2 column microbiology.vzv_igg: Presence of IgG antibodies to varicella–zoster virus. | ~19162-7(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.vzv_igm | microbiology.vzv_igm | DMv1.2 column microbiology.vzv_igm: Presence of IgM antibodies to varicella–zoster virus. | ~21597-0(MicrobiologySerology.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.blood_bkv_dna | microbiology.blood_bkv_dna | DMv1.2 column microbiology.blood_bkv_dna: Blood BKV-DNA. | ~63475-8(MicrobiologyNucleicAcid.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.blood_bkv_dna_copies | microbiology.blood_bkv_dna_copies | DMv1.2 column microbiology.blood_bkv_dna_copies: Blood BKV-DNA (copies/ml). | ~49345-2(MicrobiologyViralLoad.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.urine_bkv_dna | microbiology.urine_bkv_dna | DMv1.2 column microbiology.urine_bkv_dna: Urine BKV-DNA. | ~33978-8(MicrobiologyNucleicAcid.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.bkv_dna_kidney_biopsy | microbiology.bkv_dna_kidney_biopsy | DMv1.2 column microbiology.bkv_dna_kidney_biopsy: BKV-DNA on kidney biopsy. | ~47251-4(MicrobiologyNucleicAcid.code. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue.) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.bkv_fish_kidney_biopsy | microbiology.bkv_fish_kidney_biopsy | DMv1.2 column microbiology.bkv_fish_kidney_biopsy: BKV FISH on kidney biopsy. | ~bkv-dna-ish-tissue(MicrobiologyNucleicAcid.code. LOINC has no in-situ hybridisation code for BK virus in tissue.) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.blood_colture | microbiology.blood_colture | DMv1.2 column microbiology.blood_colture: Blood colture. | ~600-7(MicrobiologyCulture.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.urine_colture | microbiology.urine_colture | DMv1.2 column microbiology.urine_colture: Urine colture. | ~630-4(MicrobiologyCulture.code) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.other_positivity | microbiology.other_positivity | DMv1.2 column microbiology.other_positivity: Other positivity. | |||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.ebv_hepatitis_liver | microbiology.ebv_hepatitis_liver | DMv1.2 column microbiology.ebv_hepatitis_liver: EBV-Hepatitis on liver. | ~ebv-hepatitis-liver(MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); false → the same Condition with verificationStatus #refuted; blank → no Condition.) | ||
https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs | microbiology.evidence_bkvan | microbiology.evidence_bkvan | DMv1.2 column microbiology.evidence_bkvan: Histological evidence of BKVAN. | ~evidence-bkvan(MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); No → the same Condition with verificationStatus #refuted; Unknown or blank → no Condition.) |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |