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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

Logical Model: PcBioSample - Detailed Descriptions

Draft as of 2026-09-28

Definitions for the pcBioSampleLm logical model.

Guidance on how to interpret the contents of this table can be foundhere

0. pcBioSampleLm
Definition

Logical model for the PROTECT-CHILD bio_sample table.

ShortBioSample logical model
Control0..*
Is Modifierfalse
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. pcBioSampleLm.bioSampleId
Definition

Bio sample ID.

Shortbio_sample_id
Control1..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
Obligations
    ObligationsActor
    SHALL:populateLiver transplant data source
    SHALL:populateKidney transplant data source
    4. pcBioSampleLm.visitId
    Definition

    FK to visit.

    Shortvisit_id
    Control1..1
    TypeReference(Visit logical model)
    Obligations
      ObligationsActor
      SHALL:populateLiver transplant data source
      SHALL:populateKidney transplant data source
      6. pcBioSampleLm.collectionDate
      Definition

      Sample collection date.

      Shortcollection_date
      Control0..1
      Typedate
      Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
      Obligations
        ObligationsActor
        SHOULD:populate-if-knownLiver transplant data source
        SHOULD:populate-if-knownKidney transplant data source
        8. pcBioSampleLm.sendIngemmDate
        Definition

        Date sample sent to INGEMM.

        Shortsend_ingemm_date
        Control0..1
        Typedate
        Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
        Obligations
          ObligationsActor
          SHOULD:populate-if-knownLiver transplant data source
          SHOULD:populate-if-knownKidney transplant data source
          10. pcBioSampleLm.genomicSample
          Definition

          Sample used for genomic analysis.

          Shortgenomic_sample
          Control0..1
          Typeboolean
          Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
          Obligations
            ObligationsActor
            SHOULD:populate-if-knownLiver transplant data source
            SHOULD:populate-if-knownKidney transplant data source
            12. pcBioSampleLm.epigenomicSample
            Definition

            Sample used for epigenomic analysis.

            Shortepigenomic_sample
            Control0..1
            Typeboolean
            Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
            Obligations
              ObligationsActor
              SHOULD:populate-if-knownLiver transplant data source
              SHOULD:populate-if-knownKidney transplant data source

              Guidance on how to interpret the contents of this table can be foundhere

              0. pcBioSampleLm
              Definition

              Logical model for the PROTECT-CHILD bio_sample table.

              ShortBioSample logical model
              Logical ModelInstances of this logical model are not marked to be the target of a Reference
              2. pcBioSampleLm.bioSampleId
              Definition

              Bio sample ID.

              Shortbio_sample_id
              Control1..1
              Typestring
              Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
              Obligations
                ObligationsActor
                SHALL:populateLiver transplant data source
                SHALL:populateKidney transplant data source
                4. pcBioSampleLm.visitId
                Definition

                FK to visit.

                Shortvisit_id
                Control1..1
                TypeReference(Visit logical model)
                Obligations
                  ObligationsActor
                  SHALL:populateLiver transplant data source
                  SHALL:populateKidney transplant data source
                  6. pcBioSampleLm.collectionDate
                  Definition

                  Sample collection date.

                  Shortcollection_date
                  Control0..1
                  Typedate
                  Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
                  Obligations
                    ObligationsActor
                    SHOULD:populate-if-knownLiver transplant data source
                    SHOULD:populate-if-knownKidney transplant data source
                    8. pcBioSampleLm.sendIngemmDate
                    Definition

                    Date sample sent to INGEMM.

                    Shortsend_ingemm_date
                    Control0..1
                    Typedate
                    Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
                    Obligations
                      ObligationsActor
                      SHOULD:populate-if-knownLiver transplant data source
                      SHOULD:populate-if-knownKidney transplant data source
                      10. pcBioSampleLm.genomicSample
                      Definition

                      Sample used for genomic analysis.

                      Shortgenomic_sample
                      Control0..1
                      Typeboolean
                      Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
                      Obligations
                        ObligationsActor
                        SHOULD:populate-if-knownLiver transplant data source
                        SHOULD:populate-if-knownKidney transplant data source
                        12. pcBioSampleLm.epigenomicSample
                        Definition

                        Sample used for epigenomic analysis.

                        Shortepigenomic_sample
                        Control0..1
                        Typeboolean
                        Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
                        Obligations
                          ObligationsActor
                          SHOULD:populate-if-knownLiver transplant data source
                          SHOULD:populate-if-knownKidney transplant data source

                          Guidance on how to interpret the contents of this table can be foundhere

                          0. pcBioSampleLm
                          Definition

                          Logical model for the PROTECT-CHILD bio_sample table.

                          ShortBioSample logical model
                          Control0..*
                          Is Modifierfalse
                          Logical ModelInstances of this logical model are not marked to be the target of a Reference
                          2. pcBioSampleLm.bioSampleId
                          Definition

                          Bio sample ID.

                          Shortbio_sample_id
                          Control1..1
                          Typestring
                          Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
                          Obligations
                            ObligationsActor
                            SHALL:populateLiver transplant data source
                            SHALL:populateKidney transplant data source
                            4. pcBioSampleLm.visitId
                            Definition

                            FK to visit.

                            Shortvisit_id
                            Control1..1
                            TypeReference(Visit logical model)
                            Obligations
                              ObligationsActor
                              SHALL:populateLiver transplant data source
                              SHALL:populateKidney transplant data source
                              6. pcBioSampleLm.collectionDate
                              Definition

                              Sample collection date.

                              Shortcollection_date
                              Control0..1
                              Typedate
                              Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
                              Obligations
                                ObligationsActor
                                SHOULD:populate-if-knownLiver transplant data source
                                SHOULD:populate-if-knownKidney transplant data source
                                8. pcBioSampleLm.sendIngemmDate
                                Definition

                                Date sample sent to INGEMM.

                                Shortsend_ingemm_date
                                Control0..1
                                Typedate
                                Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
                                Obligations
                                  ObligationsActor
                                  SHOULD:populate-if-knownLiver transplant data source
                                  SHOULD:populate-if-knownKidney transplant data source
                                  10. pcBioSampleLm.genomicSample
                                  Definition

                                  Sample used for genomic analysis.

                                  Shortgenomic_sample
                                  Control0..1
                                  Typeboolean
                                  Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
                                  Obligations
                                    ObligationsActor
                                    SHOULD:populate-if-knownLiver transplant data source
                                    SHOULD:populate-if-knownKidney transplant data source
                                    12. pcBioSampleLm.epigenomicSample
                                    Definition

                                    Sample used for epigenomic analysis.

                                    Shortepigenomic_sample
                                    Control0..1
                                    Typeboolean
                                    Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
                                    Obligations
                                      ObligationsActor
                                      SHOULD:populate-if-knownLiver transplant data source
                                      SHOULD:populate-if-knownKidney transplant data source