PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
: Example Biological Sample - TTL Representation
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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:Specimen ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "biosample-example-1"] ; #
fhir:meta [
( fhir:profile [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample> ] )
] ; #
fhir:text [
fhir:status [ fhir:v "extensions" ] ;
fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Specimen biosample-example-1</b></p><a name=\"biosample-example-1\"> </a><a name=\"hcbiosample-example-1\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-biosample.html\">Biological Sample</a></p></div><p><b>Sample send to INGEMM date</b>: 2025-01-20</p><p><b>Genomic Test ID Relationship</b>: <a href=\"Basic-genomic-test-example-1.html\">Basic Exome sequencing</a></p><p><b>Epigenome Study ID Relationship</b>: <a href=\"Basic-epigenome-study-example-1.html\">Basic Methylation array epigenome study</a></p><p><b>Methylomic Study ID Relationship</b>: <a href=\"Basic-methylomic-study-example-1.html\">Basic Locus-level methylomic record</a></p><p><b>DNA concentration</b>: 35.2</p><p><b>identifier</b>: <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/biosample-id</code>/BS0001</p><p><b>type</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/biosample-tissue-type blood}\">Peripheral blood</span></p><p><b>subject</b>: <a href=\"Patient-ExamplePatientTransplant1.html\">Anonymous Patient Female, DoB: 2015-06-15 ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ids/recipient#REC-001)</a></p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collected[x]</b></td></tr><tr><td style=\"display: none\">*</td><td>2025-01-15</td></tr></table></div>"^^rdf:XMLLiteral ]
] ; #
fhir:extension ( [
fhir:url [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-send-ingemm-date"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-send-ingemm-date> ] ;
fhir:value [
a fhir:Date ;
fhir:v "2025-01-20"^^xsd:date ]
] [
fhir:url [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-genomic-test-ref"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-genomic-test-ref> ] ;
fhir:value [
a fhir:Reference ;
fhir:l fhir:Basic/genomic-test-example-1 ;
fhir:reference [ fhir:v "Basic/genomic-test-example-1" ] ]
] [
fhir:url [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-epigenome-study-ref"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-epigenome-study-ref> ] ;
fhir:value [
a fhir:Reference ;
fhir:l fhir:Basic/epigenome-study-example-1 ;
fhir:reference [ fhir:v "Basic/epigenome-study-example-1" ] ]
] [
fhir:url [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-methylomic-study-ref"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-methylomic-study-ref> ] ;
fhir:value [
a fhir:Reference ;
fhir:l fhir:Basic/methylomic-study-example-1 ;
fhir:reference [ fhir:v "Basic/methylomic-study-example-1" ] ]
] [
fhir:url [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-dna-concentration"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-dna-concentration> ] ;
fhir:value [
a fhir:Decimal ;
fhir:v 35.2 ]
] ) ; #
fhir:identifier ( [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/biosample-id"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/biosample-id> ] ;
fhir:value [ fhir:v "BS0001" ]
] ) ; #
fhir:type [
( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/biosample-tissue-type"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/biosample-tissue-type> ] ;
fhir:code [ fhir:v "blood" ] ;
fhir:display [ fhir:v "Blood" ] ] ) ;
fhir:text [ fhir:v "Peripheral blood" ]
] ; #
fhir:subject [
fhir:l fhir:Patient/ExamplePatientTransplant1 ;
fhir:reference [ fhir:v "Patient/ExamplePatientTransplant1" ]
] ; #
fhir:collection [
fhir:collected [
a fhir:DateTime ;
fhir:v "2025-01-15"^^xsd:date ]
] . #
