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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

: Example Microbiology record - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="microbiology-example-1"/>
  <meta>
    <profile
             value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Observation microbiology-example-1</b></p><a name="microbiology-example-1"> </a><a name="hcmicrobiology-example-1"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-microbiology.html">Microbiology</a></p></div><p><b>identifier</b>: <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id</code>/M0001</p><p><b>status</b>: Final</p><p><b>code</b>: <span title="Codes:{http://loinc.org 24323-8}">Microbiology studies (set)</span></p><p><b>subject</b>: <a href="Patient-ExamplePatientTransplant1.html">Anonymous Patient Female, DoB Unknown ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ids/recipient#REC-001)</a></p><p><b>encounter</b>: <a href="Encounter-VisitExample1.html">Encounter: identifier = https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/identifiers/visit#V000001; status = finished; class = ambulatory (v3 Code System ActCode#AMB); type = 1 month visit; period = 2023-09-15 --&gt; (ongoing)</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-dna}">EBV-DNA (quantitative)</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-dna-copies}">EBV-DNA copies/ml</span></p><p><b>value</b>: 2450 {copies}/mL<span style="background: LightGoldenRodYellow"> (Details: UCUM  code{copies}/mL = '{copies}/mL')</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igm-anti-ea}">EBV IgM anti-EA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igm-anti-vca}">EBV IgM anti-VCA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igg-anti-vca}">EBV IgG anti-VCA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igg-ebna}">EBV IgG EBNA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology cmv-dna}">CMV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology cmv-igm}">CMV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology cmv-igg}">CMV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology parvovirus-b19-dna}">Parvovirus B19 DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology parvovirus-b19-igg}">Parvovirus B19 IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology parvovirus-b19-igm}">Parvovirus B19 IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology hsv-igg}">HSV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology hsv-igm}">HSV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology adenovirus-igg}">Adenovirus IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology adenovirus-igm}">Adenovirus IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology vzv-igg}">VZV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology vzv-igm}">VZV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology blood-bkv-dna}">Blood BKV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology urine-bkv-dna}">Urine BKV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology bkv-dna-kidney-biopsy}">BKV-DNA on kidney biopsy</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology bkv-fish-kidney-biopsy}">BKV FISH on kidney biopsy</span></p><p><b>value</b>: false</p></blockquote></div>
  </text>
  <identifier>
    <system
            value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id"/>
    <value value="M0001"/>
  </identifier>
  <status value="final"/>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="24323-8"/>
      <display value="Microbiology studies (set)"/>
    </coding>
  </code>
  <subject>🔗 
    <reference value="Patient/ExamplePatientTransplant1"/>
  </subject>
  <encounter>🔗 
    <reference value="Encounter/VisitExample1"/>
  </encounter>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="ebv-dna"/>
      </coding>
    </code>
    <valueBoolean value="true"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="ebv-dna-copies"/>
      </coding>
    </code>
    <valueQuantity>
      <value value="2450"/>
      <system value="http://unitsofmeasure.org"/>
      <code value="{copies}/mL"/>
    </valueQuantity>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="ebv-igm-anti-ea"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="ebv-igm-anti-vca"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="ebv-igg-anti-vca"/>
      </coding>
    </code>
    <valueBoolean value="true"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="ebv-igg-ebna"/>
      </coding>
    </code>
    <valueBoolean value="true"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="cmv-dna"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="cmv-igm"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="cmv-igg"/>
      </coding>
    </code>
    <valueBoolean value="true"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="parvovirus-b19-dna"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="parvovirus-b19-igg"/>
      </coding>
    </code>
    <valueBoolean value="true"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="parvovirus-b19-igm"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="hsv-igg"/>
      </coding>
    </code>
    <valueBoolean value="true"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="hsv-igm"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="adenovirus-igg"/>
      </coding>
    </code>
    <valueBoolean value="true"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="adenovirus-igm"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="vzv-igg"/>
      </coding>
    </code>
    <valueBoolean value="true"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="vzv-igm"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="blood-bkv-dna"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="urine-bkv-dna"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="bkv-dna-kidney-biopsy"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
  <component>
    <code>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"/>
        <code value="bkv-fish-kidney-biopsy"/>
      </coding>
    </code>
    <valueBoolean value="false"/>
  </component>
</Observation>