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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

: Example Microbiology record - JSON Representation

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{
  "resourceType" : "Observation",
  "id" : "microbiology-example-1",
  "meta" : {
    "profile" : [
      🔗 "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation microbiology-example-1</b></p><a name=\"microbiology-example-1\"> </a><a name=\"hcmicrobiology-example-1\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-microbiology.html\">Microbiology</a></p></div><p><b>identifier</b>: <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id</code>/M0001</p><p><b>status</b>: Final</p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 24323-8}\">Microbiology studies (set)</span></p><p><b>subject</b>: <a href=\"Patient-ExamplePatientTransplant1.html\">Anonymous Patient Female, DoB Unknown ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ids/recipient#REC-001)</a></p><p><b>encounter</b>: <a href=\"Encounter-VisitExample1.html\">Encounter: identifier = https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/identifiers/visit#V000001; status = finished; class = ambulatory (v3 Code System ActCode#AMB); type = 1 month visit; period = 2023-09-15 --&gt; (ongoing)</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-dna}\">EBV-DNA (quantitative)</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-dna-copies}\">EBV-DNA copies/ml</span></p><p><b>value</b>: 2450 {copies}/mL<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM  code{copies}/mL = '{copies}/mL')</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igm-anti-ea}\">EBV IgM anti-EA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igm-anti-vca}\">EBV IgM anti-VCA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igg-anti-vca}\">EBV IgG anti-VCA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igg-ebna}\">EBV IgG EBNA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology cmv-dna}\">CMV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology cmv-igm}\">CMV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology cmv-igg}\">CMV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology parvovirus-b19-dna}\">Parvovirus B19 DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology parvovirus-b19-igg}\">Parvovirus B19 IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology parvovirus-b19-igm}\">Parvovirus B19 IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology hsv-igg}\">HSV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology hsv-igm}\">HSV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology adenovirus-igg}\">Adenovirus IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology adenovirus-igm}\">Adenovirus IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology vzv-igg}\">VZV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology vzv-igm}\">VZV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology blood-bkv-dna}\">Blood BKV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology urine-bkv-dna}\">Urine BKV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology bkv-dna-kidney-biopsy}\">BKV-DNA on kidney biopsy</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology bkv-fish-kidney-biopsy}\">BKV FISH on kidney biopsy</span></p><p><b>value</b>: false</p></blockquote></div>"
  },
  "identifier" : [
    {
      "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id",
      "value" : "M0001"
    }
  ],
  "status" : "final",
  "code" : {
    "coding" : [
      {
        "system" : "http://loinc.org",
        "code" : "24323-8",
        "display" : "Microbiology studies (set)"
      }
    ]
  },
  "subject" : {
    🔗 "reference" : "Patient/ExamplePatientTransplant1"
  },
  "encounter" : {
    🔗 "reference" : "Encounter/VisitExample1"
  },
  "component" : [
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "ebv-dna"
          }
        ]
      },
      "valueBoolean" : true
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "ebv-dna-copies"
          }
        ]
      },
      "valueQuantity" : {
        "value" : 2450,
        "system" : "http://unitsofmeasure.org",
        "code" : "{copies}/mL"
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "ebv-igm-anti-ea"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "ebv-igm-anti-vca"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "ebv-igg-anti-vca"
          }
        ]
      },
      "valueBoolean" : true
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "ebv-igg-ebna"
          }
        ]
      },
      "valueBoolean" : true
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "cmv-dna"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "cmv-igm"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "cmv-igg"
          }
        ]
      },
      "valueBoolean" : true
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "parvovirus-b19-dna"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "parvovirus-b19-igg"
          }
        ]
      },
      "valueBoolean" : true
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "parvovirus-b19-igm"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "hsv-igg"
          }
        ]
      },
      "valueBoolean" : true
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "hsv-igm"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "adenovirus-igg"
          }
        ]
      },
      "valueBoolean" : true
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "adenovirus-igm"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "vzv-igg"
          }
        ]
      },
      "valueBoolean" : true
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "vzv-igm"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "blood-bkv-dna"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "urine-bkv-dna"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "bkv-dna-kidney-biopsy"
          }
        ]
      },
      "valueBoolean" : false
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology",
            "code" : "bkv-fish-kidney-biopsy"
          }
        ]
      },
      "valueBoolean" : false
    }
  ]
}