Example Microbiology record - TTL Representation - PROTECT-CHILD Pediatric Transplant Data Implementation Guide v0.1.0-ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
: Example Microbiology record - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Observation ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "microbiology-example-1"] ; # 
  fhir:meta [
    ( fhir:profile [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology>     ] )
  ] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation microbiology-example-1</b></p><a name=\"microbiology-example-1\"> </a><a name=\"hcmicrobiology-example-1\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-microbiology.html\">Microbiology</a></p></div><p><b>identifier</b>: <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id</code>/M0001</p><p><b>status</b>: Final</p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 24323-8}\">Microbiology studies (set)</span></p><p><b>subject</b>: <a href=\"Patient-ExamplePatientTransplant1.html\">Anonymous Patient Female, DoB Unknown ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ids/recipient#REC-001)</a></p><p><b>encounter</b>: <a href=\"Encounter-VisitExample1.html\">Encounter: identifier = https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/identifiers/visit#V000001; status = finished; class = ambulatory (v3 Code System ActCode#AMB); type = 1 month visit; period = 2023-09-15 --&gt; (ongoing)</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-dna}\">EBV-DNA (quantitative)</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-dna-copies}\">EBV-DNA copies/ml</span></p><p><b>value</b>: 2450 {copies}/mL<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM  code{copies}/mL = '{copies}/mL')</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igm-anti-ea}\">EBV IgM anti-EA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igm-anti-vca}\">EBV IgM anti-VCA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igg-anti-vca}\">EBV IgG anti-VCA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology ebv-igg-ebna}\">EBV IgG EBNA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology cmv-dna}\">CMV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology cmv-igm}\">CMV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology cmv-igg}\">CMV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology parvovirus-b19-dna}\">Parvovirus B19 DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology parvovirus-b19-igg}\">Parvovirus B19 IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology parvovirus-b19-igm}\">Parvovirus B19 IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology hsv-igg}\">HSV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology hsv-igm}\">HSV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology adenovirus-igg}\">Adenovirus IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology adenovirus-igm}\">Adenovirus IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology vzv-igg}\">VZV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology vzv-igm}\">VZV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology blood-bkv-dna}\">Blood BKV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology urine-bkv-dna}\">Urine BKV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology bkv-dna-kidney-biopsy}\">BKV-DNA on kidney biopsy</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology bkv-fish-kidney-biopsy}\">BKV FISH on kidney biopsy</span></p><p><b>value</b>: false</p></blockquote></div>"^^rdf:XMLLiteral ]
  ] ; # 
  fhir:identifier ( [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id>     ] ;
fhir:value [ fhir:v "M0001" ]
  ] ) ; # 
  fhir:status [ fhir:v "final"] ; # 
  fhir:code [
    ( fhir:coding [
a loinc:24323-8 ;
fhir:system [
fhir:v "http://loinc.org"^^xsd:anyURI ;
fhir:l <http://loinc.org>       ] ;
fhir:code [ fhir:v "24323-8" ] ;
fhir:display [ fhir:v "Microbiology studies (set)" ]     ] )
  ] ; # 
  fhir:subject [
fhir:l fhir:Patient/ExamplePatientTransplant1 ;
fhir:reference [ fhir:v "Patient/ExamplePatientTransplant1" ]
  ] ; # 
  fhir:encounter [
fhir:l fhir:Encounter/VisitExample1 ;
fhir:reference [ fhir:v "Encounter/VisitExample1" ]
  ] ; # 
  fhir:component ( [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "ebv-dna" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v true     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "ebv-dna-copies" ]       ] )     ] ;
fhir:value [
a fhir:Quantity ;
fhir:value [ fhir:v "2450"^^xsd:decimal ] ;
fhir:system [
fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ;
fhir:l <http://unitsofmeasure.org>       ] ;
fhir:code [ fhir:v "{copies}/mL" ]     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "ebv-igm-anti-ea" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "ebv-igm-anti-vca" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "ebv-igg-anti-vca" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v true     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "ebv-igg-ebna" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v true     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "cmv-dna" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "cmv-igm" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "cmv-igg" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v true     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "parvovirus-b19-dna" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "parvovirus-b19-igg" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v true     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "parvovirus-b19-igm" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "hsv-igg" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v true     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "hsv-igm" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "adenovirus-igg" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v true     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "adenovirus-igm" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "vzv-igg" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v true     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "vzv-igm" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "blood-bkv-dna" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "urine-bkv-dna" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "bkv-dna-kidney-biopsy" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [
fhir:v "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology"^^xsd:anyURI ;
fhir:l <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology>         ] ;
fhir:code [ fhir:v "bkv-fish-kidney-biopsy" ]       ] )     ] ;
fhir:value [
a fhir:Boolean ;
fhir:v false     ]
  ] ) . #