Example Microbiology record - TTL Representation - PROTECT-CHILD Pediatric Transplant Data Implementation Guide v0.1.0-ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
: Example Microbiology record - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Observation/microbiology-example-1> a fhir:Observation ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "microbiology-example-1"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology" ;
       fhir:index 0 ;
       fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation microbiology-example-1</b></p><a name=\"microbiology-example-1\"> </a><a name=\"hcmicrobiology-example-1\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-microbiology.html\">Microbiology</a></p></div><p><b>identifier</b>: <a href=\"NamingSystem-NsMicrobiologyId.html\" title=\"Identifier namespace for Microbiology (Observation) resources in PROTECT-CHILD.\">ProtectChildMicrobiologyId</a>/M0001</p><p><b>status</b>: Final</p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs microbiology-panel}\">Microbiology studies panel</span></p><p><b>subject</b>: <a href=\"Patient-ExamplePatientTransplant1.html\">Anonymous Patient Female, DoB Unknown ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ids/recipient#REC-001)</a></p><p><b>encounter</b>: <a href=\"Encounter-VisitExample1.html\">Encounter: identifier = https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/identifiers/visit#V000001; status = finished; class = ambulatory (ActCode#AMB); type = 1 month visit; period = 2023-09-15 --&gt; (ongoing)</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs ebv-dna}\">EBV-DNA (quantitative)</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs ebv-dna-copies}\">EBV-DNA copies/ml</span></p><p><b>value</b>: 2450 {copies}/mL<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM  code{copies}/mL = '{copies}/mL')</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs ebv-igm-anti-ea}\">EBV IgM anti-EA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs ebv-igm-anti-vca}\">EBV IgM anti-VCA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs ebv-igg-anti-vca}\">EBV IgG anti-VCA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs ebv-igg-ebna}\">EBV IgG EBNA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs cmv-dna}\">CMV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs cmv-igm}\">CMV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs cmv-igg}\">CMV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs parvovirus-b19-dna}\">Parvovirus B19 DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs parvovirus-b19-igg}\">Parvovirus B19 IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs parvovirus-b19-igm}\">Parvovirus B19 IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs hsv-igg}\">HSV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs hsv-igm}\">HSV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs adenovirus-igg}\">Adenovirus IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs adenovirus-igm}\">Adenovirus IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs vzv-igg}\">VZV IgG</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs vzv-igm}\">VZV IgM</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs blood-bkv-dna}\">Blood BKV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs urine-bkv-dna}\">Urine BKV-DNA</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs bkv-dna-kidney-biopsy}\">BKV-DNA on kidney biopsy</span></p><p><b>value</b>: false</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs bkv-fish-kidney-biopsy}\">BKV FISH on kidney biopsy</span></p><p><b>value</b>: false</p></blockquote></div>"
  ] ;
  fhir:Observation.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/microbiology-id" ] ;
     fhir:Identifier.value [ fhir:value "M0001" ]
  ] ;
  fhir:Observation.status [ fhir:value "final"] ;
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
       fhir:Coding.code [ fhir:value "microbiology-panel" ] ;
       fhir:Coding.display [ fhir:value "Microbiology studies panel" ]
     ]
  ] ;
  fhir:Observation.subject [
     fhir:link <http://hl7.org/fhir/Patient/ExamplePatientTransplant1> ;
     fhir:Reference.reference [ fhir:value "Patient/ExamplePatientTransplant1" ]
  ] ;
  fhir:Observation.encounter [
     fhir:link <http://hl7.org/fhir/Encounter/VisitExample1> ;
     fhir:Reference.reference [ fhir:value "Encounter/VisitExample1" ]
  ] ;
  fhir:Observation.component [
     fhir:index 0 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "ebv-dna" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 1 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "ebv-dna-copies" ]
       ]
     ] ;
     fhir:Observation.component.valueQuantity [
       fhir:Quantity.value [ fhir:value "2450"^^xsd:decimal ] ;
       fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ] ;
       fhir:Quantity.code [ fhir:value "{copies}/mL" ]
     ]
  ], [
     fhir:index 2 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "ebv-igm-anti-ea" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 3 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "ebv-igm-anti-vca" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 4 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "ebv-igg-anti-vca" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 5 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "ebv-igg-ebna" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 6 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "cmv-dna" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 7 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "cmv-igm" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 8 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "cmv-igg" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 9 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "parvovirus-b19-dna" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 10 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "parvovirus-b19-igg" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 11 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "parvovirus-b19-igm" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 12 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "hsv-igg" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 13 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "hsv-igm" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 14 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "adenovirus-igg" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 15 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "adenovirus-igm" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 16 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "vzv-igg" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 17 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "vzv-igm" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 18 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "blood-bkv-dna" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 19 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "urine-bkv-dna" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 20 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "bkv-dna-kidney-biopsy" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 21 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "bkv-fish-kidney-biopsy" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ] .

<http://hl7.org/fhir/Patient/ExamplePatientTransplant1> a fhir:Patient .

<http://hl7.org/fhir/Encounter/VisitExample1> a fhir:Encounter .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Observation/microbiology-example-1.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/Observation/microbiology-example-1.ttl> .