PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
<ConceptMap xmlns="http://hl7.org/fhir">
<id value="microbiology-lm-to-fhir"/>
<text>
<status value="additional"/>
<div xmlns="http://www.w3.org/1999/xhtml"><table class="grid"><tr><td><b>DM field</b></td><td><b>Target profile</b></td><td><b>FHIR element</b></td><td><b>Relationship</b></td><td><b>Comment</b></td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.microbiologyId">microbiology_id</a></td><td>microbiology-report</td><td><a href="StructureDefinition-microbiology-report.html#s-DiagnosticReport.identifier">DiagnosticReport.identifier</a></td><td>equivalent</td><td>identifier</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.visitId">visit_id</a></td><td>microbiology-report</td><td><a href="StructureDefinition-microbiology-report.html#s-DiagnosticReport.encounter">DiagnosticReport.encounter</a></td><td>equivalent</td><td>encounter. The recipient's Visit, also for donor results</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.donorId">donor_id</a></td><td>microbiology-report</td><td><a href="StructureDefinition-microbiology-report.html#s-DiagnosticReport.subject">DiagnosticReport.subject</a></td><td>equivalent</td><td>subject. Reference(Donor) for donor results; otherwise Reference(PatientTransplant)</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.otherPositivity">other_positivity</a></td><td>microbiology-report</td><td><a href="StructureDefinition-microbiology-report.html#s-DiagnosticReport.conclusion">DiagnosticReport.conclusion</a></td><td>equivalent</td><td>conclusion (free text) Kidney only</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvDna">ebv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href="StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 5002-1 — Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvDna">cmv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href="StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 4996-5 — Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19Dna">parvovirus_b19_dna</a></td><td>microbiology-nucleic-acid</td><td><a href="StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 50348-2 — Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected. Alternatives: 75543-9</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodAdenovirusDna">blood_adenovirus_dna</a></td><td>microbiology-nucleic-acid</td><td><a href="StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 86511-3 — Adenovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodBkvDna">blood_bkv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href="StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 63475-8 — BK virus DNA [Presence] in Blood. Detected / Not detected</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.urineBkvDna">urine_bkv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href="StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 33978-8 — BK virus DNA [Presence] in Urine by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bkvDnaKidneyBiopsy">bkv_dna_kidney_biopsy</a></td><td>microbiology-nucleic-acid</td><td><a href="StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 47251-4 — BK virus DNA [Presence] in Specimen by NAA with probe detection. Detected / Not detected. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue. Kidney only</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bkvFishKidneyBiopsy">bkv_fish_kidney_biopsy</a></td><td>microbiology-nucleic-acid</td><td><a href="StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>MicrobiologyCS#bkv-dna-ish-tissue — BK virus DNA [Presence] in Tissue by in situ hybridization. Detected / Not detected. LOINC has no in-situ hybridisation code for BK virus in tissue. Kidney only</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvDnaCopies">ebv_dna_copies</a></td><td>microbiology-viral-load</td><td><a href="StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 36923-1 — Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 93840-7, 47982-4, 43730-1</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvDnaCopies">cmv_dna_copies</a></td><td>microbiology-viral-load</td><td><a href="StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 29604-6 — Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 100675-8, 30247-1, 72493-0</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19DnaCopies">parvovirus_b19_dna_copies</a></td><td>microbiology-viral-load</td><td><a href="StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 49431-0 — Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49434-4, 74420-1</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodAdenovirusDnaCopies">blood_adenovirus_dna_copies</a></td><td>microbiology-viral-load</td><td><a href="StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 49341-1 — Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49334-6, 106727-1</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodBkvDnaCopies">blood_bkv_dna_copies</a></td><td>microbiology-viral-load</td><td><a href="StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 49345-2 — BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 101341-6, 41479-7, 32284-2</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIgmAntiEa">ebv_igm_anti_ea</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>MicrobiologyCS#ebv-ea-igm — EBV early antigen IgM Ab [Presence] in Serum. Positive / Negative. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader.</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIgmAntiVca">ebv_igm_anti_vca</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 30340-4 — Epstein Barr virus capsid IgM Ab [Presence] in Serum. Positive / Negative. Alternatives: 24115-8, 40751-0, 93714-4; the OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen.</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIggAntiVca">ebv_igg_anti_vca</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 30339-6 — Epstein Barr virus capsid IgG Ab [Presence] in Serum. Positive / Negative. Alternatives: 93713-6</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIggEbna">ebv_igg_ebna</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 7883-2 — Epstein Barr virus nuclear IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvIgm">cmv_igm</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 30325-5 — Cytomegalovirus IgM Ab [Presence] in Serum or Plasma. Positive / Negative. Alternatives: 87725-8</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvIgg">cmv_igg</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 13949-3 — Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay. Positive / Negative. Alternatives: 22244-8, 87726-6</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19Igg">parvovirus_b19_igg</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 29675-6 — Parvovirus B19 IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19Igm">parvovirus_b19_igm</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 7981-4 — Parvovirus B19 IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.hsvIgg">hsv_igg</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 19106-4 — Herpes simplex virus IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.hsvIgm">hsv_igm</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 25435-9 — Herpes simplex virus IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.adenovirusIgg">adenovirus_igg</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 41162-9 — Adenovirus IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.adenovirusIgm">adenovirus_igm</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 21054-2 — Adenovirus IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.vzvIgg">vzv_igg</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 19162-7 — Varicella zoster virus IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.vzvIgm">vzv_igm</a></td><td>microbiology-serology</td><td><a href="StructureDefinition-microbiology-serology.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 21597-0 — Varicella zoster virus IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodColture">blood_colture</a></td><td>microbiology-culture</td><td><a href="StructureDefinition-microbiology-culture.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 600-7 — Bacteria identified in Blood by Culture. Organism, or Positive / Negative. Kidney only</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.urineColture">urine_colture</a></td><td>microbiology-culture</td><td><a href="StructureDefinition-microbiology-culture.html#s-Observation.value_x_">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 630-4 — Bacteria identified in Urine by Culture. Organism, or Positive / Negative. Kidney only</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvHepatitisLiver">ebv_hepatitis_liver</a></td><td>microbiology-diagnosis</td><td><a href="StructureDefinition-microbiology-diagnosis.html#s-Condition.code">Condition.code</a></td><td>related to</td><td>SNOMED 302919001 Epstein-Barr virus hepatitis. presence = positive. Liver only. MicrobiologyDiagnosis (Condition). false → the same Condition with verificationStatus = #refuted; blank → no Condition.</td></tr><tr><td><a href="StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.evidenceBkvan">evidence_bkvan</a></td><td>microbiology-diagnosis</td><td><a href="StructureDefinition-microbiology-diagnosis.html#s-Condition.code">Condition.code</a></td><td>related to</td><td>SNOMED 713886006 BK virus nephropathy. presence = positive. MicrobiologyDiagnosis (Condition). No → the same Condition with verificationStatus = #refuted; Unknown or blank → no Condition.</td></tr></table></div>
</text>
<url
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/microbiology-lm-to-fhir"/>
<version value="0.1.0-ci-build"/>
<name value="MicrobiologyLmToFhir"/>
<title value="Microbiology logical model → FHIR"/>
<status value="draft"/>
<experimental value="false"/>
<date value="2026-09-28T06:51:47+00:00"/>
<publisher value="Protect Child"/>
<contact>
<name value="Protect Child"/>
<telecom>
<system value="url"/>
<value value="https://protect-child.eu/"/>
</telecom>
</contact>
<description
value="Where each field of the Microbiology logical model lands in this guide's profiles. Generated from the model-map page; one group per target profile. Equivalence `relatedto` marks a field that is derived, split or recoded on the way."/>
<group>
<source
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm"/>
<target
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-report"/>
<element>
<code value="pcMicrobiologyLm.microbiologyId"/>
<display value="microbiology_id"/>
<target>
<code value="DiagnosticReport.identifier"/>
<equivalence value="equivalent"/>
<comment value="identifier"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.visitId"/>
<display value="visit_id"/>
<target>
<code value="DiagnosticReport.encounter"/>
<equivalence value="equivalent"/>
<comment
value="encounter. The recipient's Visit, also for donor results"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.donorId"/>
<display value="donor_id"/>
<target>
<code value="DiagnosticReport.subject"/>
<equivalence value="equivalent"/>
<comment
value="subject. Reference(Donor) for donor results; otherwise Reference(PatientTransplant)"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.otherPositivity"/>
<display value="other_positivity"/>
<target>
<code value="DiagnosticReport.conclusion"/>
<equivalence value="equivalent"/>
<comment value="conclusion (free text) Kidney only"/>
</target>
</element>
</group>
<group>
<source
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm"/>
<target
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-nucleic-acid"/>
<element>
<code value="pcMicrobiologyLm.ebvDna"/>
<display value="ebv_dna"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 5002-1 — Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.cmvDna"/>
<display value="cmv_dna"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 4996-5 — Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.parvovirusB19Dna"/>
<display value="parvovirus_b19_dna"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 50348-2 — Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected. Alternatives: 75543-9"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.bloodAdenovirusDna"/>
<display value="blood_adenovirus_dna"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 86511-3 — Adenovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.bloodBkvDna"/>
<display value="blood_bkv_dna"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 63475-8 — BK virus DNA [Presence] in Blood. Detected / Not detected"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.urineBkvDna"/>
<display value="urine_bkv_dna"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 33978-8 — BK virus DNA [Presence] in Urine by NAA with probe detection. Detected / Not detected"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.bkvDnaKidneyBiopsy"/>
<display value="bkv_dna_kidney_biopsy"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 47251-4 — BK virus DNA [Presence] in Specimen by NAA with probe detection. Detected / Not detected. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue. Kidney only"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.bkvFishKidneyBiopsy"/>
<display value="bkv_fish_kidney_biopsy"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="MicrobiologyCS#bkv-dna-ish-tissue — BK virus DNA [Presence] in Tissue by in situ hybridization. Detected / Not detected. LOINC has no in-situ hybridisation code for BK virus in tissue. Kidney only"/>
</target>
</element>
</group>
<group>
<source
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm"/>
<target
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-viral-load"/>
<element>
<code value="pcMicrobiologyLm.ebvDnaCopies"/>
<display value="ebv_dna_copies"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 36923-1 — Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 93840-7, 47982-4, 43730-1"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.cmvDnaCopies"/>
<display value="cmv_dna_copies"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 29604-6 — Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 100675-8, 30247-1, 72493-0"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.parvovirusB19DnaCopies"/>
<display value="parvovirus_b19_dna_copies"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 49431-0 — Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49434-4, 74420-1"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.bloodAdenovirusDnaCopies"/>
<display value="blood_adenovirus_dna_copies"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 49341-1 — Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49334-6, 106727-1"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.bloodBkvDnaCopies"/>
<display value="blood_bkv_dna_copies"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 49345-2 — BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 101341-6, 41479-7, 32284-2"/>
</target>
</element>
</group>
<group>
<source
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm"/>
<target
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-serology"/>
<element>
<code value="pcMicrobiologyLm.ebvIgmAntiEa"/>
<display value="ebv_igm_anti_ea"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="MicrobiologyCS#ebv-ea-igm — EBV early antigen IgM Ab [Presence] in Serum. Positive / Negative. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader."/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.ebvIgmAntiVca"/>
<display value="ebv_igm_anti_vca"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 30340-4 — Epstein Barr virus capsid IgM Ab [Presence] in Serum. Positive / Negative. Alternatives: 24115-8, 40751-0, 93714-4; the OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen."/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.ebvIggAntiVca"/>
<display value="ebv_igg_anti_vca"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 30339-6 — Epstein Barr virus capsid IgG Ab [Presence] in Serum. Positive / Negative. Alternatives: 93713-6"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.ebvIggEbna"/>
<display value="ebv_igg_ebna"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 7883-2 — Epstein Barr virus nuclear IgG Ab [Presence] in Serum. Positive / Negative"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.cmvIgm"/>
<display value="cmv_igm"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 30325-5 — Cytomegalovirus IgM Ab [Presence] in Serum or Plasma. Positive / Negative. Alternatives: 87725-8"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.cmvIgg"/>
<display value="cmv_igg"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 13949-3 — Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay. Positive / Negative. Alternatives: 22244-8, 87726-6"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.parvovirusB19Igg"/>
<display value="parvovirus_b19_igg"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 29675-6 — Parvovirus B19 IgG Ab [Presence] in Serum. Positive / Negative"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.parvovirusB19Igm"/>
<display value="parvovirus_b19_igm"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 7981-4 — Parvovirus B19 IgM Ab [Presence] in Serum. Positive / Negative"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.hsvIgg"/>
<display value="hsv_igg"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 19106-4 — Herpes simplex virus IgG Ab [Presence] in Serum. Positive / Negative"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.hsvIgm"/>
<display value="hsv_igm"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 25435-9 — Herpes simplex virus IgM Ab [Presence] in Serum. Positive / Negative"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.adenovirusIgg"/>
<display value="adenovirus_igg"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 41162-9 — Adenovirus IgG Ab [Presence] in Serum. Positive / Negative"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.adenovirusIgm"/>
<display value="adenovirus_igm"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 21054-2 — Adenovirus IgM Ab [Presence] in Serum. Positive / Negative"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.vzvIgg"/>
<display value="vzv_igg"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 19162-7 — Varicella zoster virus IgG Ab [Presence] in Serum. Positive / Negative"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.vzvIgm"/>
<display value="vzv_igm"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 21597-0 — Varicella zoster virus IgM Ab [Presence] in Serum. Positive / Negative"/>
</target>
</element>
</group>
<group>
<source
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm"/>
<target
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-culture"/>
<element>
<code value="pcMicrobiologyLm.bloodColture"/>
<display value="blood_colture"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 600-7 — Bacteria identified in Blood by Culture. Organism, or Positive / Negative. Kidney only"/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.urineColture"/>
<display value="urine_colture"/>
<target>
<code value="Observation.value[x]"/>
<equivalence value="equivalent"/>
<comment
value="LOINC 630-4 — Bacteria identified in Urine by Culture. Organism, or Positive / Negative. Kidney only"/>
</target>
</element>
</group>
<group>
<source
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm"/>
<target
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-diagnosis"/>
<element>
<code value="pcMicrobiologyLm.ebvHepatitisLiver"/>
<display value="ebv_hepatitis_liver"/>
<target>
<code value="Condition.code"/>
<equivalence value="relatedto"/>
<comment
value="SNOMED 302919001 Epstein-Barr virus hepatitis. presence = positive. Liver only. MicrobiologyDiagnosis (Condition). false → the same Condition with verificationStatus = #refuted; blank → no Condition."/>
</target>
</element>
<element>
<code value="pcMicrobiologyLm.evidenceBkvan"/>
<display value="evidence_bkvan"/>
<target>
<code value="Condition.code"/>
<equivalence value="relatedto"/>
<comment
value="SNOMED 713886006 BK virus nephropathy. presence = positive. MicrobiologyDiagnosis (Condition). No → the same Condition with verificationStatus = #refuted; Unknown or blank → no Condition."/>
</target>
</element>
</group>
</ConceptMap>