PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
{
"resourceType" : "ConceptMap",
"id" : "microbiology-lm-to-fhir",
"text" : {
"status" : "additional",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><table class=\"grid\"><tr><td><b>DM field</b></td><td><b>Target profile</b></td><td><b>FHIR element</b></td><td><b>Relationship</b></td><td><b>Comment</b></td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.microbiologyId\">microbiology_id</a></td><td>microbiology-report</td><td><a href=\"StructureDefinition-microbiology-report.html#s-DiagnosticReport.identifier\">DiagnosticReport.identifier</a></td><td>equivalent</td><td>identifier</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.visitId\">visit_id</a></td><td>microbiology-report</td><td><a href=\"StructureDefinition-microbiology-report.html#s-DiagnosticReport.encounter\">DiagnosticReport.encounter</a></td><td>equivalent</td><td>encounter. The recipient's Visit, also for donor results</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.donorId\">donor_id</a></td><td>microbiology-report</td><td><a href=\"StructureDefinition-microbiology-report.html#s-DiagnosticReport.subject\">DiagnosticReport.subject</a></td><td>equivalent</td><td>subject. Reference(Donor) for donor results; otherwise Reference(PatientTransplant)</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.otherPositivity\">other_positivity</a></td><td>microbiology-report</td><td><a href=\"StructureDefinition-microbiology-report.html#s-DiagnosticReport.conclusion\">DiagnosticReport.conclusion</a></td><td>equivalent</td><td>conclusion (free text) Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvDna\">ebv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 5002-1 — Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvDna\">cmv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 4996-5 — Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19Dna\">parvovirus_b19_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 50348-2 — Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected. Alternatives: 75543-9</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodAdenovirusDna\">blood_adenovirus_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 86511-3 — Adenovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodBkvDna\">blood_bkv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 63475-8 — BK virus DNA [Presence] in Blood. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.urineBkvDna\">urine_bkv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 33978-8 — BK virus DNA [Presence] in Urine by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bkvDnaKidneyBiopsy\">bkv_dna_kidney_biopsy</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 47251-4 — BK virus DNA [Presence] in Specimen by NAA with probe detection. Detected / Not detected. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue. Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bkvFishKidneyBiopsy\">bkv_fish_kidney_biopsy</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>MicrobiologyCS#bkv-dna-ish-tissue — BK virus DNA [Presence] in Tissue by in situ hybridization. Detected / Not detected. LOINC has no in-situ hybridisation code for BK virus in tissue. Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvDnaCopies\">ebv_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 36923-1 — Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 93840-7, 47982-4, 43730-1</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvDnaCopies\">cmv_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 29604-6 — Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 100675-8, 30247-1, 72493-0</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19DnaCopies\">parvovirus_b19_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 49431-0 — Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49434-4, 74420-1</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodAdenovirusDnaCopies\">blood_adenovirus_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 49341-1 — Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49334-6, 106727-1</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodBkvDnaCopies\">blood_bkv_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 49345-2 — BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 101341-6, 41479-7, 32284-2</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIgmAntiEa\">ebv_igm_anti_ea</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>MicrobiologyCS#ebv-ea-igm — EBV early antigen IgM Ab [Presence] in Serum. Positive / Negative. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader.</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIgmAntiVca\">ebv_igm_anti_vca</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 30340-4 — Epstein Barr virus capsid IgM Ab [Presence] in Serum. Positive / Negative. Alternatives: 24115-8, 40751-0, 93714-4; the OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen.</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIggAntiVca\">ebv_igg_anti_vca</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 30339-6 — Epstein Barr virus capsid IgG Ab [Presence] in Serum. Positive / Negative. Alternatives: 93713-6</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIggEbna\">ebv_igg_ebna</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 7883-2 — Epstein Barr virus nuclear IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvIgm\">cmv_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 30325-5 — Cytomegalovirus IgM Ab [Presence] in Serum or Plasma. Positive / Negative. Alternatives: 87725-8</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvIgg\">cmv_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 13949-3 — Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay. Positive / Negative. Alternatives: 22244-8, 87726-6</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19Igg\">parvovirus_b19_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 29675-6 — Parvovirus B19 IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19Igm\">parvovirus_b19_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 7981-4 — Parvovirus B19 IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.hsvIgg\">hsv_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 19106-4 — Herpes simplex virus IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.hsvIgm\">hsv_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 25435-9 — Herpes simplex virus IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.adenovirusIgg\">adenovirus_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 41162-9 — Adenovirus IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.adenovirusIgm\">adenovirus_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 21054-2 — Adenovirus IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.vzvIgg\">vzv_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 19162-7 — Varicella zoster virus IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.vzvIgm\">vzv_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 21597-0 — Varicella zoster virus IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodColture\">blood_colture</a></td><td>microbiology-culture</td><td><a href=\"StructureDefinition-microbiology-culture.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 600-7 — Bacteria identified in Blood by Culture. Organism, or Positive / Negative. Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.urineColture\">urine_colture</a></td><td>microbiology-culture</td><td><a href=\"StructureDefinition-microbiology-culture.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 630-4 — Bacteria identified in Urine by Culture. Organism, or Positive / Negative. Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvHepatitisLiver\">ebv_hepatitis_liver</a></td><td>microbiology-diagnosis</td><td><a href=\"StructureDefinition-microbiology-diagnosis.html#s-Condition.code\">Condition.code</a></td><td>related to</td><td>SNOMED 302919001 Epstein-Barr virus hepatitis. presence = positive. Liver only. MicrobiologyDiagnosis (Condition). false → the same Condition with verificationStatus = #refuted; blank → no Condition.</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.evidenceBkvan\">evidence_bkvan</a></td><td>microbiology-diagnosis</td><td><a href=\"StructureDefinition-microbiology-diagnosis.html#s-Condition.code\">Condition.code</a></td><td>related to</td><td>SNOMED 713886006 BK virus nephropathy. presence = positive. MicrobiologyDiagnosis (Condition). No → the same Condition with verificationStatus = #refuted; Unknown or blank → no Condition.</td></tr></table></div>"
},
"url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/microbiology-lm-to-fhir",
"version" : "0.1.0-ci-build",
"name" : "MicrobiologyLmToFhir",
"title" : "Microbiology logical model → FHIR",
"status" : "draft",
"experimental" : false,
"date" : "2026-09-28T06:51:47+00:00",
"publisher" : "Protect Child",
"contact" : [
{
"name" : "Protect Child",
"telecom" : [
{
"system" : "url",
"value" : "https://protect-child.eu/"
}
]
}
],
"description" : "Where each field of the Microbiology logical model lands in this guide's profiles. Generated from the model-map page; one group per target profile. Equivalence `relatedto` marks a field that is derived, split or recoded on the way.",
"group" : [
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm",
"target" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-report",
"element" : [
{
"code" : "pcMicrobiologyLm.microbiologyId",
"display" : "microbiology_id",
"target" : [
{
"code" : "DiagnosticReport.identifier",
"equivalence" : "equivalent",
"comment" : "identifier"
}
]
},
{
"code" : "pcMicrobiologyLm.visitId",
"display" : "visit_id",
"target" : [
{
"code" : "DiagnosticReport.encounter",
"equivalence" : "equivalent",
"comment" : "encounter. The recipient's Visit, also for donor results"
}
]
},
{
"code" : "pcMicrobiologyLm.donorId",
"display" : "donor_id",
"target" : [
{
"code" : "DiagnosticReport.subject",
"equivalence" : "equivalent",
"comment" : "subject. Reference(Donor) for donor results; otherwise Reference(PatientTransplant)"
}
]
},
{
"code" : "pcMicrobiologyLm.otherPositivity",
"display" : "other_positivity",
"target" : [
{
"code" : "DiagnosticReport.conclusion",
"equivalence" : "equivalent",
"comment" : "conclusion (free text) Kidney only"
}
]
}
]
},
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm",
"target" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-nucleic-acid",
"element" : [
{
"code" : "pcMicrobiologyLm.ebvDna",
"display" : "ebv_dna",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 5002-1 — Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected"
}
]
},
{
"code" : "pcMicrobiologyLm.cmvDna",
"display" : "cmv_dna",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 4996-5 — Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected"
}
]
},
{
"code" : "pcMicrobiologyLm.parvovirusB19Dna",
"display" : "parvovirus_b19_dna",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 50348-2 — Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected. Alternatives: 75543-9"
}
]
},
{
"code" : "pcMicrobiologyLm.bloodAdenovirusDna",
"display" : "blood_adenovirus_dna",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 86511-3 — Adenovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected"
}
]
},
{
"code" : "pcMicrobiologyLm.bloodBkvDna",
"display" : "blood_bkv_dna",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 63475-8 — BK virus DNA [Presence] in Blood. Detected / Not detected"
}
]
},
{
"code" : "pcMicrobiologyLm.urineBkvDna",
"display" : "urine_bkv_dna",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 33978-8 — BK virus DNA [Presence] in Urine by NAA with probe detection. Detected / Not detected"
}
]
},
{
"code" : "pcMicrobiologyLm.bkvDnaKidneyBiopsy",
"display" : "bkv_dna_kidney_biopsy",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 47251-4 — BK virus DNA [Presence] in Specimen by NAA with probe detection. Detected / Not detected. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue. Kidney only"
}
]
},
{
"code" : "pcMicrobiologyLm.bkvFishKidneyBiopsy",
"display" : "bkv_fish_kidney_biopsy",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "MicrobiologyCS#bkv-dna-ish-tissue — BK virus DNA [Presence] in Tissue by in situ hybridization. Detected / Not detected. LOINC has no in-situ hybridisation code for BK virus in tissue. Kidney only"
}
]
}
]
},
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm",
"target" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-viral-load",
"element" : [
{
"code" : "pcMicrobiologyLm.ebvDnaCopies",
"display" : "ebv_dna_copies",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 36923-1 — Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 93840-7, 47982-4, 43730-1"
}
]
},
{
"code" : "pcMicrobiologyLm.cmvDnaCopies",
"display" : "cmv_dna_copies",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 29604-6 — Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 100675-8, 30247-1, 72493-0"
}
]
},
{
"code" : "pcMicrobiologyLm.parvovirusB19DnaCopies",
"display" : "parvovirus_b19_dna_copies",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 49431-0 — Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49434-4, 74420-1"
}
]
},
{
"code" : "pcMicrobiologyLm.bloodAdenovirusDnaCopies",
"display" : "blood_adenovirus_dna_copies",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 49341-1 — Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49334-6, 106727-1"
}
]
},
{
"code" : "pcMicrobiologyLm.bloodBkvDnaCopies",
"display" : "blood_bkv_dna_copies",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 49345-2 — BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 101341-6, 41479-7, 32284-2"
}
]
}
]
},
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm",
"target" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-serology",
"element" : [
{
"code" : "pcMicrobiologyLm.ebvIgmAntiEa",
"display" : "ebv_igm_anti_ea",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "MicrobiologyCS#ebv-ea-igm — EBV early antigen IgM Ab [Presence] in Serum. Positive / Negative. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader."
}
]
},
{
"code" : "pcMicrobiologyLm.ebvIgmAntiVca",
"display" : "ebv_igm_anti_vca",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 30340-4 — Epstein Barr virus capsid IgM Ab [Presence] in Serum. Positive / Negative. Alternatives: 24115-8, 40751-0, 93714-4; the OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen."
}
]
},
{
"code" : "pcMicrobiologyLm.ebvIggAntiVca",
"display" : "ebv_igg_anti_vca",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 30339-6 — Epstein Barr virus capsid IgG Ab [Presence] in Serum. Positive / Negative. Alternatives: 93713-6"
}
]
},
{
"code" : "pcMicrobiologyLm.ebvIggEbna",
"display" : "ebv_igg_ebna",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 7883-2 — Epstein Barr virus nuclear IgG Ab [Presence] in Serum. Positive / Negative"
}
]
},
{
"code" : "pcMicrobiologyLm.cmvIgm",
"display" : "cmv_igm",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 30325-5 — Cytomegalovirus IgM Ab [Presence] in Serum or Plasma. Positive / Negative. Alternatives: 87725-8"
}
]
},
{
"code" : "pcMicrobiologyLm.cmvIgg",
"display" : "cmv_igg",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 13949-3 — Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay. Positive / Negative. Alternatives: 22244-8, 87726-6"
}
]
},
{
"code" : "pcMicrobiologyLm.parvovirusB19Igg",
"display" : "parvovirus_b19_igg",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 29675-6 — Parvovirus B19 IgG Ab [Presence] in Serum. Positive / Negative"
}
]
},
{
"code" : "pcMicrobiologyLm.parvovirusB19Igm",
"display" : "parvovirus_b19_igm",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 7981-4 — Parvovirus B19 IgM Ab [Presence] in Serum. Positive / Negative"
}
]
},
{
"code" : "pcMicrobiologyLm.hsvIgg",
"display" : "hsv_igg",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 19106-4 — Herpes simplex virus IgG Ab [Presence] in Serum. Positive / Negative"
}
]
},
{
"code" : "pcMicrobiologyLm.hsvIgm",
"display" : "hsv_igm",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 25435-9 — Herpes simplex virus IgM Ab [Presence] in Serum. Positive / Negative"
}
]
},
{
"code" : "pcMicrobiologyLm.adenovirusIgg",
"display" : "adenovirus_igg",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 41162-9 — Adenovirus IgG Ab [Presence] in Serum. Positive / Negative"
}
]
},
{
"code" : "pcMicrobiologyLm.adenovirusIgm",
"display" : "adenovirus_igm",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 21054-2 — Adenovirus IgM Ab [Presence] in Serum. Positive / Negative"
}
]
},
{
"code" : "pcMicrobiologyLm.vzvIgg",
"display" : "vzv_igg",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 19162-7 — Varicella zoster virus IgG Ab [Presence] in Serum. Positive / Negative"
}
]
},
{
"code" : "pcMicrobiologyLm.vzvIgm",
"display" : "vzv_igm",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 21597-0 — Varicella zoster virus IgM Ab [Presence] in Serum. Positive / Negative"
}
]
}
]
},
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm",
"target" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-culture",
"element" : [
{
"code" : "pcMicrobiologyLm.bloodColture",
"display" : "blood_colture",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 600-7 — Bacteria identified in Blood by Culture. Organism, or Positive / Negative. Kidney only"
}
]
},
{
"code" : "pcMicrobiologyLm.urineColture",
"display" : "urine_colture",
"target" : [
{
"code" : "Observation.value[x]",
"equivalence" : "equivalent",
"comment" : "LOINC 630-4 — Bacteria identified in Urine by Culture. Organism, or Positive / Negative. Kidney only"
}
]
}
]
},
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm",
"target" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-diagnosis",
"element" : [
{
"code" : "pcMicrobiologyLm.ebvHepatitisLiver",
"display" : "ebv_hepatitis_liver",
"target" : [
{
"code" : "Condition.code",
"equivalence" : "relatedto",
"comment" : "SNOMED 302919001 Epstein-Barr virus hepatitis. presence = positive. Liver only. MicrobiologyDiagnosis (Condition). false → the same Condition with verificationStatus = #refuted; blank → no Condition."
}
]
},
{
"code" : "pcMicrobiologyLm.evidenceBkvan",
"display" : "evidence_bkvan",
"target" : [
{
"code" : "Condition.code",
"equivalence" : "relatedto",
"comment" : "SNOMED 713886006 BK virus nephropathy. presence = positive. MicrobiologyDiagnosis (Condition). No → the same Condition with verificationStatus = #refuted; Unknown or blank → no Condition."
}
]
}
]
}
]
}