PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
@prefix fhir: <http://hl7.org/fhir/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- <http://hl7.org/fhir/ConceptMap/microbiology-lm-to-fhir> a fhir:ConceptMap ; fhir:nodeRole fhir:treeRoot ; fhir:Resource.id [ fhir:value "microbiology-lm-to-fhir"] ; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "additional" ] ; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><table class=\"grid\"><tr><td><b>DM field</b></td><td><b>Target profile</b></td><td><b>FHIR element</b></td><td><b>Relationship</b></td><td><b>Comment</b></td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.microbiologyId\">microbiology_id</a></td><td>microbiology-report</td><td><a href=\"StructureDefinition-microbiology-report.html#s-DiagnosticReport.identifier\">DiagnosticReport.identifier</a></td><td>equivalent</td><td>identifier</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.visitId\">visit_id</a></td><td>microbiology-report</td><td><a href=\"StructureDefinition-microbiology-report.html#s-DiagnosticReport.encounter\">DiagnosticReport.encounter</a></td><td>equivalent</td><td>encounter. The recipient's Visit, also for donor results</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.donorId\">donor_id</a></td><td>microbiology-report</td><td><a href=\"StructureDefinition-microbiology-report.html#s-DiagnosticReport.subject\">DiagnosticReport.subject</a></td><td>equivalent</td><td>subject. Reference(Donor) for donor results; otherwise Reference(PatientTransplant)</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.otherPositivity\">other_positivity</a></td><td>microbiology-report</td><td><a href=\"StructureDefinition-microbiology-report.html#s-DiagnosticReport.conclusion\">DiagnosticReport.conclusion</a></td><td>equivalent</td><td>conclusion (free text) Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvDna\">ebv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 5002-1 — Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvDna\">cmv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 4996-5 — Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19Dna\">parvovirus_b19_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 50348-2 — Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected. Alternatives: 75543-9</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodAdenovirusDna\">blood_adenovirus_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 86511-3 — Adenovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodBkvDna\">blood_bkv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 63475-8 — BK virus DNA [Presence] in Blood. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.urineBkvDna\">urine_bkv_dna</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 33978-8 — BK virus DNA [Presence] in Urine by NAA with probe detection. Detected / Not detected</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bkvDnaKidneyBiopsy\">bkv_dna_kidney_biopsy</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 47251-4 — BK virus DNA [Presence] in Specimen by NAA with probe detection. Detected / Not detected. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue. Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bkvFishKidneyBiopsy\">bkv_fish_kidney_biopsy</a></td><td>microbiology-nucleic-acid</td><td><a href=\"StructureDefinition-microbiology-nucleic-acid.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>MicrobiologyCS#bkv-dna-ish-tissue — BK virus DNA [Presence] in Tissue by in situ hybridization. Detected / Not detected. LOINC has no in-situ hybridisation code for BK virus in tissue. Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvDnaCopies\">ebv_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 36923-1 — Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 93840-7, 47982-4, 43730-1</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvDnaCopies\">cmv_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 29604-6 — Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 100675-8, 30247-1, 72493-0</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19DnaCopies\">parvovirus_b19_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 49431-0 — Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49434-4, 74420-1</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodAdenovirusDnaCopies\">blood_adenovirus_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 49341-1 — Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49334-6, 106727-1</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodBkvDnaCopies\">blood_bkv_dna_copies</a></td><td>microbiology-viral-load</td><td><a href=\"StructureDefinition-microbiology-viral-load.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 49345-2 — BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 101341-6, 41479-7, 32284-2</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIgmAntiEa\">ebv_igm_anti_ea</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>MicrobiologyCS#ebv-ea-igm — EBV early antigen IgM Ab [Presence] in Serum. Positive / Negative. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader.</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIgmAntiVca\">ebv_igm_anti_vca</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 30340-4 — Epstein Barr virus capsid IgM Ab [Presence] in Serum. Positive / Negative. Alternatives: 24115-8, 40751-0, 93714-4; the OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen.</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIggAntiVca\">ebv_igg_anti_vca</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 30339-6 — Epstein Barr virus capsid IgG Ab [Presence] in Serum. Positive / Negative. Alternatives: 93713-6</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvIggEbna\">ebv_igg_ebna</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 7883-2 — Epstein Barr virus nuclear IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvIgm\">cmv_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 30325-5 — Cytomegalovirus IgM Ab [Presence] in Serum or Plasma. Positive / Negative. Alternatives: 87725-8</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.cmvIgg\">cmv_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 13949-3 — Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay. Positive / Negative. Alternatives: 22244-8, 87726-6</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19Igg\">parvovirus_b19_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 29675-6 — Parvovirus B19 IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.parvovirusB19Igm\">parvovirus_b19_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 7981-4 — Parvovirus B19 IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.hsvIgg\">hsv_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 19106-4 — Herpes simplex virus IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.hsvIgm\">hsv_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 25435-9 — Herpes simplex virus IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.adenovirusIgg\">adenovirus_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 41162-9 — Adenovirus IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.adenovirusIgm\">adenovirus_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 21054-2 — Adenovirus IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.vzvIgg\">vzv_igg</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 19162-7 — Varicella zoster virus IgG Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.vzvIgm\">vzv_igm</a></td><td>microbiology-serology</td><td><a href=\"StructureDefinition-microbiology-serology.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 21597-0 — Varicella zoster virus IgM Ab [Presence] in Serum. Positive / Negative</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.bloodColture\">blood_colture</a></td><td>microbiology-culture</td><td><a href=\"StructureDefinition-microbiology-culture.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 600-7 — Bacteria identified in Blood by Culture. Organism, or Positive / Negative. Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.urineColture\">urine_colture</a></td><td>microbiology-culture</td><td><a href=\"StructureDefinition-microbiology-culture.html#s-Observation.value_x_\">Observation.value[x]</a></td><td>equivalent</td><td>LOINC 630-4 — Bacteria identified in Urine by Culture. Organism, or Positive / Negative. Kidney only</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.ebvHepatitisLiver\">ebv_hepatitis_liver</a></td><td>microbiology-diagnosis</td><td><a href=\"StructureDefinition-microbiology-diagnosis.html#s-Condition.code\">Condition.code</a></td><td>related to</td><td>SNOMED 302919001 Epstein-Barr virus hepatitis. presence = positive. Liver only. MicrobiologyDiagnosis (Condition). false → the same Condition with verificationStatus = #refuted; blank → no Condition.</td></tr><tr><td><a href=\"StructureDefinition-pcMicrobiologyLm.html#s-pcMicrobiologyLm.evidenceBkvan\">evidence_bkvan</a></td><td>microbiology-diagnosis</td><td><a href=\"StructureDefinition-microbiology-diagnosis.html#s-Condition.code\">Condition.code</a></td><td>related to</td><td>SNOMED 713886006 BK virus nephropathy. presence = positive. MicrobiologyDiagnosis (Condition). No → the same Condition with verificationStatus = #refuted; Unknown or blank → no Condition.</td></tr></table></div>" ] ; fhir:ConceptMap.url [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/microbiology-lm-to-fhir"] ; fhir:ConceptMap.version [ fhir:value "0.1.0-ci-build"] ; fhir:ConceptMap.name [ fhir:value "MicrobiologyLmToFhir"] ; fhir:ConceptMap.title [ fhir:value "Microbiology logical model → FHIR"] ; fhir:ConceptMap.status [ fhir:value "draft"] ; fhir:ConceptMap.experimental [ fhir:value "false"^^xsd:boolean] ; fhir:ConceptMap.date [ fhir:value "2026-09-28T06:51:47+00:00"^^xsd:dateTime] ; fhir:ConceptMap.publisher [ fhir:value "Protect Child"] ; fhir:ConceptMap.contact [ fhir:index 0 ; fhir:ContactDetail.name [ fhir:value "Protect Child" ] ; fhir:ContactDetail.telecom [ fhir:index 0 ; fhir:ContactPoint.system [ fhir:value "url" ] ; fhir:ContactPoint.value [ fhir:value "https://protect-child.eu/" ] ] ] ; fhir:ConceptMap.description [ fhir:value "Where each field of the Microbiology logical model lands in this guide's profiles. Generated from the model-map page; one group per target profile. Equivalence `relatedto` marks a field that is derived, split or recoded on the way."] ; fhir:ConceptMap.group [ fhir:index 0 ; fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm" ] ; fhir:ConceptMap.group.target [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-report" ] ; fhir:ConceptMap.group.element [ fhir:index 0 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.microbiologyId" ] ; fhir:ConceptMap.group.element.display [ fhir:value "microbiology_id" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "DiagnosticReport.identifier" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "identifier" ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.visitId" ] ; fhir:ConceptMap.group.element.display [ fhir:value "visit_id" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "DiagnosticReport.encounter" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "encounter. The recipient's Visit, also for donor results" ] ] ], [ fhir:index 2 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.donorId" ] ; fhir:ConceptMap.group.element.display [ fhir:value "donor_id" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "DiagnosticReport.subject" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "subject. Reference(Donor) for donor results; otherwise Reference(PatientTransplant)" ] ] ], [ fhir:index 3 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.otherPositivity" ] ; fhir:ConceptMap.group.element.display [ fhir:value "other_positivity" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "DiagnosticReport.conclusion" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "conclusion (free text) Kidney only" ] ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm" ] ; fhir:ConceptMap.group.target [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-nucleic-acid" ] ; fhir:ConceptMap.group.element [ fhir:index 0 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.ebvDna" ] ; fhir:ConceptMap.group.element.display [ fhir:value "ebv_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 5002-1 — Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected" ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.cmvDna" ] ; fhir:ConceptMap.group.element.display [ fhir:value "cmv_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 4996-5 — Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected" ] ] ], [ fhir:index 2 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.parvovirusB19Dna" ] ; fhir:ConceptMap.group.element.display [ fhir:value "parvovirus_b19_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 50348-2 — Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected. Alternatives: 75543-9" ] ] ], [ fhir:index 3 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.bloodAdenovirusDna" ] ; fhir:ConceptMap.group.element.display [ fhir:value "blood_adenovirus_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 86511-3 — Adenovirus DNA [Presence] in Blood by NAA with probe detection. Detected / Not detected" ] ] ], [ fhir:index 4 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.bloodBkvDna" ] ; fhir:ConceptMap.group.element.display [ fhir:value "blood_bkv_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 63475-8 — BK virus DNA [Presence] in Blood. Detected / Not detected" ] ] ], [ fhir:index 5 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.urineBkvDna" ] ; fhir:ConceptMap.group.element.display [ fhir:value "urine_bkv_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 33978-8 — BK virus DNA [Presence] in Urine by NAA with probe detection. Detected / Not detected" ] ] ], [ fhir:index 6 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.bkvDnaKidneyBiopsy" ] ; fhir:ConceptMap.group.element.display [ fhir:value "bkv_dna_kidney_biopsy" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 47251-4 — BK virus DNA [Presence] in Specimen by NAA with probe detection. Detected / Not detected. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue. Kidney only" ] ] ], [ fhir:index 7 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.bkvFishKidneyBiopsy" ] ; fhir:ConceptMap.group.element.display [ fhir:value "bkv_fish_kidney_biopsy" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyCS#bkv-dna-ish-tissue — BK virus DNA [Presence] in Tissue by in situ hybridization. Detected / Not detected. LOINC has no in-situ hybridisation code for BK virus in tissue. Kidney only" ] ] ] ], [ fhir:index 2 ; fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm" ] ; fhir:ConceptMap.group.target [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-viral-load" ] ; fhir:ConceptMap.group.element [ fhir:index 0 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.ebvDnaCopies" ] ; fhir:ConceptMap.group.element.display [ fhir:value "ebv_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 36923-1 — Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 93840-7, 47982-4, 43730-1" ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.cmvDnaCopies" ] ; fhir:ConceptMap.group.element.display [ fhir:value "cmv_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 29604-6 — Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 100675-8, 30247-1, 72493-0" ] ] ], [ fhir:index 2 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.parvovirusB19DnaCopies" ] ; fhir:ConceptMap.group.element.display [ fhir:value "parvovirus_b19_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 49431-0 — Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49434-4, 74420-1" ] ] ], [ fhir:index 3 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.bloodAdenovirusDnaCopies" ] ; fhir:ConceptMap.group.element.display [ fhir:value "blood_adenovirus_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 49341-1 — Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 49334-6, 106727-1" ] ] ], [ fhir:index 4 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.bloodBkvDnaCopies" ] ; fhir:ConceptMap.group.element.display [ fhir:value "blood_bkv_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 49345-2 — BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection. Quantity. Alternatives: 101341-6, 41479-7, 32284-2" ] ] ] ], [ fhir:index 3 ; fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm" ] ; fhir:ConceptMap.group.target [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-serology" ] ; fhir:ConceptMap.group.element [ fhir:index 0 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.ebvIgmAntiEa" ] ; fhir:ConceptMap.group.element.display [ fhir:value "ebv_igm_anti_ea" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyCS#ebv-ea-igm — EBV early antigen IgM Ab [Presence] in Serum. Positive / Negative. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader." ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.ebvIgmAntiVca" ] ; fhir:ConceptMap.group.element.display [ fhir:value "ebv_igm_anti_vca" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 30340-4 — Epstein Barr virus capsid IgM Ab [Presence] in Serum. Positive / Negative. Alternatives: 24115-8, 40751-0, 93714-4; the OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen." ] ] ], [ fhir:index 2 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.ebvIggAntiVca" ] ; fhir:ConceptMap.group.element.display [ fhir:value "ebv_igg_anti_vca" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 30339-6 — Epstein Barr virus capsid IgG Ab [Presence] in Serum. Positive / Negative. Alternatives: 93713-6" ] ] ], [ fhir:index 3 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.ebvIggEbna" ] ; fhir:ConceptMap.group.element.display [ fhir:value "ebv_igg_ebna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 7883-2 — Epstein Barr virus nuclear IgG Ab [Presence] in Serum. Positive / Negative" ] ] ], [ fhir:index 4 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.cmvIgm" ] ; fhir:ConceptMap.group.element.display [ fhir:value "cmv_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 30325-5 — Cytomegalovirus IgM Ab [Presence] in Serum or Plasma. Positive / Negative. Alternatives: 87725-8" ] ] ], [ fhir:index 5 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.cmvIgg" ] ; fhir:ConceptMap.group.element.display [ fhir:value "cmv_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 13949-3 — Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay. Positive / Negative. Alternatives: 22244-8, 87726-6" ] ] ], [ fhir:index 6 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.parvovirusB19Igg" ] ; fhir:ConceptMap.group.element.display [ fhir:value "parvovirus_b19_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 29675-6 — Parvovirus B19 IgG Ab [Presence] in Serum. Positive / Negative" ] ] ], [ fhir:index 7 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.parvovirusB19Igm" ] ; fhir:ConceptMap.group.element.display [ fhir:value "parvovirus_b19_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 7981-4 — Parvovirus B19 IgM Ab [Presence] in Serum. Positive / Negative" ] ] ], [ fhir:index 8 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.hsvIgg" ] ; fhir:ConceptMap.group.element.display [ fhir:value "hsv_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 19106-4 — Herpes simplex virus IgG Ab [Presence] in Serum. Positive / Negative" ] ] ], [ fhir:index 9 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.hsvIgm" ] ; fhir:ConceptMap.group.element.display [ fhir:value "hsv_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 25435-9 — Herpes simplex virus IgM Ab [Presence] in Serum. Positive / Negative" ] ] ], [ fhir:index 10 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.adenovirusIgg" ] ; fhir:ConceptMap.group.element.display [ fhir:value "adenovirus_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 41162-9 — Adenovirus IgG Ab [Presence] in Serum. Positive / Negative" ] ] ], [ fhir:index 11 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.adenovirusIgm" ] ; fhir:ConceptMap.group.element.display [ fhir:value "adenovirus_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 21054-2 — Adenovirus IgM Ab [Presence] in Serum. Positive / Negative" ] ] ], [ fhir:index 12 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.vzvIgg" ] ; fhir:ConceptMap.group.element.display [ fhir:value "vzv_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 19162-7 — Varicella zoster virus IgG Ab [Presence] in Serum. Positive / Negative" ] ] ], [ fhir:index 13 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.vzvIgm" ] ; fhir:ConceptMap.group.element.display [ fhir:value "vzv_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 21597-0 — Varicella zoster virus IgM Ab [Presence] in Serum. Positive / Negative" ] ] ] ], [ fhir:index 4 ; fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm" ] ; fhir:ConceptMap.group.target [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-culture" ] ; fhir:ConceptMap.group.element [ fhir:index 0 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.bloodColture" ] ; fhir:ConceptMap.group.element.display [ fhir:value "blood_colture" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 600-7 — Bacteria identified in Blood by Culture. Organism, or Positive / Negative. Kidney only" ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.urineColture" ] ; fhir:ConceptMap.group.element.display [ fhir:value "urine_colture" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Observation.value[x]" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "LOINC 630-4 — Bacteria identified in Urine by Culture. Organism, or Positive / Negative. Kidney only" ] ] ] ], [ fhir:index 5 ; fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcMicrobiologyLm" ] ; fhir:ConceptMap.group.target [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology-diagnosis" ] ; fhir:ConceptMap.group.element [ fhir:index 0 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.ebvHepatitisLiver" ] ; fhir:ConceptMap.group.element.display [ fhir:value "ebv_hepatitis_liver" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Condition.code" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "SNOMED 302919001 Epstein-Barr virus hepatitis. presence = positive. Liver only. MicrobiologyDiagnosis (Condition). false → the same Condition with verificationStatus = #refuted; blank → no Condition." ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.element.code [ fhir:value "pcMicrobiologyLm.evidenceBkvan" ] ; fhir:ConceptMap.group.element.display [ fhir:value "evidence_bkvan" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "Condition.code" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "SNOMED 713886006 BK virus nephropathy. presence = positive. MicrobiologyDiagnosis (Condition). No → the same Condition with verificationStatus = #refuted; Unknown or blank → no Condition." ] ] ] ] . # - ontology header ------------------------------------------------------------ <http://hl7.org/fhir/ConceptMap/microbiology-lm-to-fhir.ttl> a owl:Ontology ; owl:imports fhir:fhir.ttl ; owl:versionIRI <http://build.fhir.org/ConceptMap/microbiology-lm-to-fhir.ttl> .
IG © 2025 Protect Child. Package hl7.eu.fhir.protect-child#0.1.0-ci-build based on FHIR 4.0.1. Generated 2026-09-28
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