PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
<ConceptMap xmlns="http://hl7.org/fhir">
<id value="dm-microbiology-to-omop"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ConceptMap dm-microbiology-to-omop</b></p><a name="dm-microbiology-to-omop"> </a><a name="hcdm-microbiology-to-omop"> </a><p>This mapping does not specify any particular context of use.</p><br/><p>Mapping from <a href="CodeSystem-dm-variable-cs.html">PROTECT-CHILD Data Model Variables</a> to <a href="http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html">OHDSI Standardized Vocabularies</a></p><table class="grid"><tr><td colspan="2"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan="2"><b>Target Concept Details</b></td><td><b>Comment</b></td></tr><tr><td colspan="2"><b>Codes</b> from <a href="CodeSystem-dm-variable-cs.html" title="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs">PROTECT-CHILD Data Model Variables</a></td><td/><td colspan="2"><b>Codes</b> from <a href="http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html" title="https://fhir-terminology.ohdsi.org">OHDSI Standardized Vocabularies</a></td><td/></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.ebv_dna</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.ebv_dna</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3012570</td><td style="border-left-width: 0px">Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.ebv_dna_copies</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.ebv_dna_copies</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3037329</td><td style="border-left-width: 0px">Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">8799</td><td style="border-left-width: 0px">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.ebv_igm_anti_ea</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.ebv_igm_anti_ea</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3033477</td><td style="border-left-width: 0px">Epstein Barr virus early Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.ebv_igm_anti_vca</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.ebv_igm_anti_vca</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3012732</td><td style="border-left-width: 0px">Epstein Barr virus nuclear IgM Ab [Presence] in Serum **(correction needed: this is EBNA IgM, LOINC 7884-0; the variable is VCA IgM, LOINC 30340-4)**</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.ebv_igg_anti_vca</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.ebv_igg_anti_vca</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3006585</td><td style="border-left-width: 0px">Epstein Barr virus capsid IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.ebv_igg_ebna</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.ebv_igg_ebna</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3021849</td><td style="border-left-width: 0px">Epstein Barr virus nuclear IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.cmv_dna</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.cmv_dna</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3021884</td><td style="border-left-width: 0px">Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.cmv_dna_copies</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.cmv_dna_copies</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3024974</td><td style="border-left-width: 0px">Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">8799</td><td style="border-left-width: 0px">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.cmv_igm</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.cmv_igm</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3013332</td><td style="border-left-width: 0px">Cytomegalovirus IgM Ab [Presence] in Serum or Plasma</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.cmv_igg</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.cmv_igg</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3012887</td><td style="border-left-width: 0px">Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.parvovirus_b19_dna</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.parvovirus_b19_dna</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3032435</td><td style="border-left-width: 0px">Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.parvovirus_b19_dna_copies</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.parvovirus_b19_dna_copies</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3032993</td><td style="border-left-width: 0px">Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">8799</td><td style="border-left-width: 0px">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.parvovirus_b19_igg</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.parvovirus_b19_igg</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3006410</td><td style="border-left-width: 0px">Parvovirus B19 IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.parvovirus_b19_igm</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.parvovirus_b19_igm</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3008321</td><td style="border-left-width: 0px">Parvovirus B19 IgM Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.hsv_igg</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.hsv_igg</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3020134</td><td style="border-left-width: 0px">Herpes simplex virus IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45880296</td><td style="border-left-width: 0px">Not detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45877985</td><td style="border-left-width: 0px">Detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.hsv_igm</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.hsv_igm</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3010761</td><td style="border-left-width: 0px">Herpes simplex virus IgM Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.adenovirus_igg</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.adenovirus_igg</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3040947</td><td style="border-left-width: 0px">Adenovirus IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.adenovirus_igm</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.adenovirus_igm</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3036242</td><td style="border-left-width: 0px">Adenovirus IgM Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.blood_adenovirus_dna</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.blood_adenovirus_dna</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">36203755</td><td style="border-left-width: 0px">Adenovirus DNA [Presence] in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.blood_adenovirus_dna_copies</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.blood_adenovirus_dna_copies</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3028979</td><td style="border-left-width: 0px">Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">8799</td><td style="border-left-width: 0px">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.vzv_igg</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.vzv_igg</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3022386</td><td style="border-left-width: 0px">Varicella zoster virus IgG Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.vzv_igm</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.vzv_igm</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3016065</td><td style="border-left-width: 0px">Varicella zoster virus IgM Ab [Presence] in Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.blood_bkv_dna</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.blood_bkv_dna</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">40766205</td><td style="border-left-width: 0px">BK virus DNA [Presence] in Blood</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45878583</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45884084</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.blood_bkv_dna_copies</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.blood_bkv_dna_copies</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3029226</td><td style="border-left-width: 0px">BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">8799</td><td style="border-left-width: 0px">copies per milliliter</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.urine_bkv_dna</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.urine_bkv_dna</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">3029173</td><td style="border-left-width: 0px">BK virus DNA [Presence] in Urine by NAA with probe detection</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45880296</td><td style="border-left-width: 0px">Not detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45877985</td><td style="border-left-width: 0px">Detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.bkv_dna_kidney_biopsy</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.bkv_dna_kidney_biopsy</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">1091792</td><td style="border-left-width: 0px">BK virus DNA [Presence] in Specimen</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45880296</td><td style="border-left-width: 0px">Not detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45877985</td><td style="border-left-width: 0px">Detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.bkv_fish_kidney_biopsy</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.bkv_fish_kidney_biopsy</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">1091792</td><td style="border-left-width: 0px">BK virus DNA [Presence] in Specimen</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45880296</td><td style="border-left-width: 0px">Not detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">45877985</td><td style="border-left-width: 0px">Detected</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">1073315</td><td style="border-left-width: 0px">Fluorescence in situ hybridization technique</td><td>OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.blood_colture</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.blood_colture</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">4107893</td><td style="border-left-width: 0px">Blood culture</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">9189</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">9191</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.</td></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">microbiology.urine_colture</td><td style="border-left-width: 0px; border-bottom-style: none">microbiology.urine_colture</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">4024509</td><td style="border-left-width: 0px">Urine culture</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">9189</td><td style="border-left-width: 0px">Negative</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.</td></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">9191</td><td style="border-left-width: 0px">Positive</td><td>OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.</td></tr><tr><td style="border-right-width: 0px">microbiology.ebv_hepatitis_liver</td><td style="border-left-width: 0px">microbiology.ebv_hepatitis_liver</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">4119142</td><td style="border-left-width: 0px">Epstein-Barr virus hepatitis</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style="border-right-width: 0px">microbiology.evidence_bkvan</td><td style="border-left-width: 0px">microbiology.evidence_bkvan</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">37017585</td><td style="border-left-width: 0px">BK virus nephropathy</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr></table></div>
</text>
<url
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-microbiology-to-omop"/>
<version value="0.1.0-ci-build"/>
<name value="DmMicrobiologyToOmop"/>
<title value="DM microbiology → OMOP"/>
<status value="draft"/>
<experimental value="false"/>
<date value="2026-09-28T06:51:47+00:00"/>
<publisher value="Protect Child"/>
<contact>
<name value="Protect Child"/>
<telecom>
<system value="url"/>
<value value="https://protect-child.eu/"/>
</telecom>
</contact>
<description
value="The OMOP concepts for each column of the DMv1.2 microbiology table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary)."/>
<group>
<source
value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs"/>
<target value="https://fhir-terminology.ohdsi.org"/>
<element>
<code value="microbiology.ebv_dna"/>
<target>
<code value="3012570"/>
<display
value="Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.ebv_dna_copies"/>
<target>
<code value="3037329"/>
<display
value="Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="8799"/>
<display value="copies per milliliter"/>
<equivalence value="relatedto"/>
<comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/>
</target>
</element>
<element>
<code value="microbiology.ebv_igm_anti_ea"/>
<target>
<code value="3033477"/>
<display value="Epstein Barr virus early Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.ebv_igm_anti_vca"/>
<target>
<code value="3012732"/>
<display
value="Epstein Barr virus nuclear IgM Ab [Presence] in Serum **(correction needed: this is EBNA IgM, LOINC 7884-0; the variable is VCA IgM, LOINC 30340-4)**"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.ebv_igg_anti_vca"/>
<target>
<code value="3006585"/>
<display
value="Epstein Barr virus capsid IgG Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.ebv_igg_ebna"/>
<target>
<code value="3021849"/>
<display
value="Epstein Barr virus nuclear IgG Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.cmv_dna"/>
<target>
<code value="3021884"/>
<display
value="Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.cmv_dna_copies"/>
<target>
<code value="3024974"/>
<display
value="Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="8799"/>
<display value="copies per milliliter"/>
<equivalence value="relatedto"/>
<comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/>
</target>
</element>
<element>
<code value="microbiology.cmv_igm"/>
<target>
<code value="3013332"/>
<display
value="Cytomegalovirus IgM Ab [Presence] in Serum or Plasma"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.cmv_igg"/>
<target>
<code value="3012887"/>
<display
value="Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.parvovirus_b19_dna"/>
<target>
<code value="3032435"/>
<display
value="Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.parvovirus_b19_dna_copies"/>
<target>
<code value="3032993"/>
<display
value="Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="8799"/>
<display value="copies per milliliter"/>
<equivalence value="relatedto"/>
<comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/>
</target>
</element>
<element>
<code value="microbiology.parvovirus_b19_igg"/>
<target>
<code value="3006410"/>
<display value="Parvovirus B19 IgG Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.parvovirus_b19_igm"/>
<target>
<code value="3008321"/>
<display value="Parvovirus B19 IgM Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.hsv_igg"/>
<target>
<code value="3020134"/>
<display value="Herpes simplex virus IgG Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45880296"/>
<display value="Not detected"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45877985"/>
<display value="Detected"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.hsv_igm"/>
<target>
<code value="3010761"/>
<display value="Herpes simplex virus IgM Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.adenovirus_igg"/>
<target>
<code value="3040947"/>
<display value="Adenovirus IgG Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.adenovirus_igm"/>
<target>
<code value="3036242"/>
<display value="Adenovirus IgM Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.blood_adenovirus_dna"/>
<target>
<code value="36203755"/>
<display
value="Adenovirus DNA [Presence] in Blood by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.blood_adenovirus_dna_copies"/>
<target>
<code value="3028979"/>
<display
value="Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="8799"/>
<display value="copies per milliliter"/>
<equivalence value="relatedto"/>
<comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/>
</target>
</element>
<element>
<code value="microbiology.vzv_igg"/>
<target>
<code value="3022386"/>
<display value="Varicella zoster virus IgG Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.vzv_igm"/>
<target>
<code value="3016065"/>
<display value="Varicella zoster virus IgM Ab [Presence] in Serum"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.blood_bkv_dna"/>
<target>
<code value="40766205"/>
<display value="BK virus DNA [Presence] in Blood"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45878583"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45884084"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.blood_bkv_dna_copies"/>
<target>
<code value="3029226"/>
<display
value="BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="8799"/>
<display value="copies per milliliter"/>
<equivalence value="relatedto"/>
<comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/>
</target>
</element>
<element>
<code value="microbiology.urine_bkv_dna"/>
<target>
<code value="3029173"/>
<display
value="BK virus DNA [Presence] in Urine by NAA with probe detection"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45880296"/>
<display value="Not detected"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45877985"/>
<display value="Detected"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.bkv_dna_kidney_biopsy"/>
<target>
<code value="1091792"/>
<display value="BK virus DNA [Presence] in Specimen"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45880296"/>
<display value="Not detected"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45877985"/>
<display value="Detected"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
</element>
<element>
<code value="microbiology.bkv_fish_kidney_biopsy"/>
<target>
<code value="1091792"/>
<display value="BK virus DNA [Presence] in Specimen"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45880296"/>
<display value="Not detected"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="45877985"/>
<display value="Detected"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/>
</target>
<target>
<code value="1073315"/>
<display value="Fluorescence in situ hybridization technique"/>
<equivalence value="equivalent"/>
<comment
value="OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED."/>
</target>
</element>
<element>
<code value="microbiology.blood_colture"/>
<target>
<code value="4107893"/>
<display value="Blood culture"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."/>
</target>
<target>
<code value="9189"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."/>
</target>
<target>
<code value="9191"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."/>
</target>
</element>
<element>
<code value="microbiology.urine_colture"/>
<target>
<code value="4024509"/>
<display value="Urine culture"/>
<equivalence value="equivalent"/>
<comment
value="OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."/>
</target>
<target>
<code value="9189"/>
<display value="Negative"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."/>
</target>
<target>
<code value="9191"/>
<display value="Positive"/>
<equivalence value="relatedto"/>
<comment
value="OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."/>
</target>
</element>
<element>
<code value="microbiology.ebv_hepatitis_liver"/>
<target>
<code value="4119142"/>
<display value="Epstein-Barr virus hepatitis"/>
<equivalence value="equivalent"/>
<comment
value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/>
</target>
</element>
<element>
<code value="microbiology.evidence_bkvan"/>
<target>
<code value="37017585"/>
<display value="BK virus nephropathy"/>
<equivalence value="equivalent"/>
<comment
value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/>
</target>
</element>
</group>
</ConceptMap>