Generated Narrative: ConceptMap dm-microbiology-to-omop

This mapping does not specify any particular context of use.


Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies

Source Concept DetailsRelationshipTarget Concept DetailsComment
Codes from PROTECT-CHILD Data Model VariablesCodes from OHDSI Standardized Vocabularies
microbiology.ebv_dnamicrobiology.ebv_dnais equivalent to3012570Epstein Barr virus DNA [Presence] in Blood by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.ebv_dna_copiesmicrobiology.ebv_dna_copiesis equivalent to3037329Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to8799copies per milliliterOMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.
microbiology.ebv_igm_anti_eamicrobiology.ebv_igm_anti_eais equivalent to3033477Epstein Barr virus early Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.ebv_igm_anti_vcamicrobiology.ebv_igm_anti_vcais equivalent to3012732Epstein Barr virus nuclear IgM Ab [Presence] in Serum **(correction needed: this is EBNA IgM, LOINC 7884-0; the variable is VCA IgM, LOINC 30340-4)**OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.ebv_igg_anti_vcamicrobiology.ebv_igg_anti_vcais equivalent to3006585Epstein Barr virus capsid IgG Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.ebv_igg_ebnamicrobiology.ebv_igg_ebnais equivalent to3021849Epstein Barr virus nuclear IgG Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.cmv_dnamicrobiology.cmv_dnais equivalent to3021884Cytomegalovirus DNA [Presence] in Blood by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.cmv_dna_copiesmicrobiology.cmv_dna_copiesis equivalent to3024974Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to8799copies per milliliterOMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.
microbiology.cmv_igmmicrobiology.cmv_igmis equivalent to3013332Cytomegalovirus IgM Ab [Presence] in Serum or PlasmaOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.cmv_iggmicrobiology.cmv_iggis equivalent to3012887Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by ImmunoassayOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.parvovirus_b19_dnamicrobiology.parvovirus_b19_dnais equivalent to3032435Parvovirus B19 DNA [Presence] in Blood by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.parvovirus_b19_dna_copiesmicrobiology.parvovirus_b19_dna_copiesis equivalent to3032993Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to8799copies per milliliterOMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.
microbiology.parvovirus_b19_iggmicrobiology.parvovirus_b19_iggis equivalent to3006410Parvovirus B19 IgG Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.parvovirus_b19_igmmicrobiology.parvovirus_b19_igmis equivalent to3008321Parvovirus B19 IgM Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.hsv_iggmicrobiology.hsv_iggis equivalent to3020134Herpes simplex virus IgG Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45880296Not detectedOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45877985DetectedOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.hsv_igmmicrobiology.hsv_igmis equivalent to3010761Herpes simplex virus IgM Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.adenovirus_iggmicrobiology.adenovirus_iggis equivalent to3040947Adenovirus IgG Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.adenovirus_igmmicrobiology.adenovirus_igmis equivalent to3036242Adenovirus IgM Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.blood_adenovirus_dnamicrobiology.blood_adenovirus_dnais equivalent to36203755Adenovirus DNA [Presence] in Blood by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.blood_adenovirus_dna_copiesmicrobiology.blood_adenovirus_dna_copiesis equivalent to3028979Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to8799copies per milliliterOMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.
microbiology.vzv_iggmicrobiology.vzv_iggis equivalent to3022386Varicella zoster virus IgG Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.vzv_igmmicrobiology.vzv_igmis equivalent to3016065Varicella zoster virus IgM Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.blood_bkv_dnamicrobiology.blood_bkv_dnais equivalent to40766205BK virus DNA [Presence] in BloodOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.blood_bkv_dna_copiesmicrobiology.blood_bkv_dna_copiesis equivalent to3029226BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to8799copies per milliliterOMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.
microbiology.urine_bkv_dnamicrobiology.urine_bkv_dnais equivalent to3029173BK virus DNA [Presence] in Urine by NAA with probe detectionOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45880296Not detectedOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45877985DetectedOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.bkv_dna_kidney_biopsymicrobiology.bkv_dna_kidney_biopsyis equivalent to1091792BK virus DNA [Presence] in SpecimenOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45880296Not detectedOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45877985DetectedOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
microbiology.bkv_fish_kidney_biopsymicrobiology.bkv_fish_kidney_biopsyis equivalent to1091792BK virus DNA [Presence] in SpecimenOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45880296Not detectedOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45877985DetectedOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is equivalent to1073315Fluorescence in situ hybridization techniqueOMOP OBSERVATION.observation_concept_id; vocabulary SNOMED.
microbiology.blood_colturemicrobiology.blood_coltureis equivalent to4107893Blood cultureOMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED.
is related to9189NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.
is related to9191PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.
microbiology.urine_colturemicrobiology.urine_coltureis equivalent to4024509Urine cultureOMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED.
is related to9189NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.
is related to9191PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.
microbiology.ebv_hepatitis_livermicrobiology.ebv_hepatitis_liveris equivalent to4119142Epstein-Barr virus hepatitisOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
microbiology.evidence_bkvanmicrobiology.evidence_bkvanis equivalent to37017585BK virus nephropathyOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
 <status value="draft"/> <experimental value="false"/> <date value="2026-09-28T06:51:47+00:00"/> <publisher value="Protect Child"/> <contact> <name value="Protect Child"/> <telecom> <system value="url"/> <value value="https://protect-child.eu/"/> </telecom> </contact> <description value="The OMOP concepts for each column of the DMv1.2 microbiology table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary)."/> <group> <source value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs"/> <target value="https://fhir-terminology.ohdsi.org"/> <element> <code value="microbiology.ebv_dna"/> <target> <code value="3012570"/> <display value="Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.ebv_dna_copies"/> <target> <code value="3037329"/> <display value="Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="8799"/> <display value="copies per milliliter"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/> </target> </element> <element> <code value="microbiology.ebv_igm_anti_ea"/> <target> <code value="3033477"/> <display value="Epstein Barr virus early Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.ebv_igm_anti_vca"/> <target> <code value="3012732"/> <display value="Epstein Barr virus nuclear IgM Ab [Presence] in Serum **(correction needed: this is EBNA IgM, LOINC 7884-0; the variable is VCA IgM, LOINC 30340-4)**"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.ebv_igg_anti_vca"/> <target> <code value="3006585"/> <display value="Epstein Barr virus capsid IgG Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.ebv_igg_ebna"/> <target> <code value="3021849"/> <display value="Epstein Barr virus nuclear IgG Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.cmv_dna"/> <target> <code value="3021884"/> <display value="Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.cmv_dna_copies"/> <target> <code value="3024974"/> <display value="Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="8799"/> <display value="copies per milliliter"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/> </target> </element> <element> <code value="microbiology.cmv_igm"/> <target> <code value="3013332"/> <display value="Cytomegalovirus IgM Ab [Presence] in Serum or Plasma"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.cmv_igg"/> <target> <code value="3012887"/> <display value="Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.parvovirus_b19_dna"/> <target> <code value="3032435"/> <display value="Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.parvovirus_b19_dna_copies"/> <target> <code value="3032993"/> <display value="Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="8799"/> <display value="copies per milliliter"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/> </target> </element> <element> <code value="microbiology.parvovirus_b19_igg"/> <target> <code value="3006410"/> <display value="Parvovirus B19 IgG Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.parvovirus_b19_igm"/> <target> <code value="3008321"/> <display value="Parvovirus B19 IgM Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.hsv_igg"/> <target> <code value="3020134"/> <display value="Herpes simplex virus IgG Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45880296"/> <display value="Not detected"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45877985"/> <display value="Detected"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.hsv_igm"/> <target> <code value="3010761"/> <display value="Herpes simplex virus IgM Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.adenovirus_igg"/> <target> <code value="3040947"/> <display value="Adenovirus IgG Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.adenovirus_igm"/> <target> <code value="3036242"/> <display value="Adenovirus IgM Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.blood_adenovirus_dna"/> <target> <code value="36203755"/> <display value="Adenovirus DNA [Presence] in Blood by NAA with probe detection"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.blood_adenovirus_dna_copies"/> <target> <code value="3028979"/> <display value="Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="8799"/> <display value="copies per milliliter"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."/> </target> </element> <element> <code value="microbiology.vzv_igg"/> <target> <code value="3022386"/> <display value="Varicella zoster virus IgG Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.vzv_igm"/> <target> <code value="3016065"/> <display value="Varicella zoster virus IgM Ab [Presence] in Serum"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45884084"/> <display value="Positive"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> </element> <element> <code value="microbiology.blood_bkv_dna"/> <target> <code value="40766205"/> <display value="BK virus DNA [Presence] in Blood"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."/> </target> <target> <code value="45878583"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; 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vocabulary LOINC."/> </target> <target> <code value="45880296"/> <display value="Not detected"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="45877985"/> <display value="Detected"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."/> </target> <target> <code value="1073315"/> <display value="Fluorescence in situ hybridization technique"/> <equivalence value="equivalent"/> <comment value="OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED."/> </target> </element> <element> <code value="microbiology.blood_colture"/> <target> <code value="4107893"/> <display value="Blood culture"/> <equivalence value="equivalent"/> <comment value="OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."/> </target> <target> <code value="9189"/> <display value="Negative"/> <equivalence value="relatedto"/> <comment value="OMOP MEASUREMENT.value_as_concept_id; 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vocabulary SNOMED."/> </target> </element> <element> <code value="microbiology.evidence_bkvan"/> <target> <code value="37017585"/> <display value="BK virus nephropathy"/> <equivalence value="equivalent"/> <comment value="OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."/> </target> </element> </group> </ConceptMap>