PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Official URL: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-lab-test-to-omop | Version: 0.1.0-ci-build | |||
| Draft as of 2026-09-28 | Computable Name: DmLabTestToOmop | |||
The OMOP concepts for each column of the DMv1.2 lab_test table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. equivalent: the column's own concept; narrower: one of several concepts the column's values map to; relatedto: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).
This mapping does not specify any particular context of use.
Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies
| Source Concept Details | Relationship | Target Concept Details | Comment | ||
| Codes from PROTECT-CHILD Data Model Variables | Codes from OHDSI Standardized Vocabularies | ||||
| lab_test.name | lab_test.name | narrower | 3016723 | Creatinine [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| narrower | 3020564 | Creatinine [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3024561 | Albumin [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3034485 | Albumin/Creatinine [Mass Ratio] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 46236949 | Alanine aminotransferase [Enzymatic activity/volume] in Serum, Plasma or Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3023183 | Ammonium ion [Moles/volume] in Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3022592 | Ammonium ion [Moles/volume] in Arterial blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3013721 | Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3026217 | Bile acid [Mass/volume] in Serum | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3028110 | Bile acid [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3006916 | Magnesium [Mass/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3033836 | Magnesium [Moles/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3010421 | pH of Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3024232 | Phosphate [Mass/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3018913 | Phosphate [Moles/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3000620 | Complement C3 [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3017766 | Complement C4 [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3032503 | Calcium [Mass/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3005162 | Calcium [Moles/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3019900 | Cholesterol [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3027114 | Cholesterol [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3015185 | Cholinesterase [Enzymatic activity/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3022907 | Direct antiglobulin test.polyspecific reagent [Presence] on Red Blood Cells | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3029719 | Indirect antiglobulin test.unspecified reagent [Presence] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 46236952 | Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (MDRD)/1.73 sq M | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3030366 | Cystatin C [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3027597 | Bilirubin.direct [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3028638 | Bilirubin.direct [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3037110 | Fasting glucose [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3018251 | Fasting glucose [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 36304157 | Cystatin C and Glomerular filtration rate by Cystatin C-based formula panel - Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3026910 | Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3004501 | Glucose [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3013826 | Glucose [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3012336 | Haptoglobin [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3034639 | Hemoglobin A1c [Mass/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3004410 | Hemoglobin A1c/Hemoglobin.total in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3006576 | Bicarbonate [Moles/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3023314 | Hematocrit [Volume Fraction] of Blood by Automated count | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3000963 | Hemoglobin [Mass/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3007164 | IgA [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3005719 | IgG [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3028026 | IgM [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3007242 | Bilirubin.indirect [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3007359 | Bilirubin.indirect [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3022217 | INR in Platelet poor plasma by Coagulation assay | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 40762125 | Lactate [Mass/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3047181 | Lactate [Moles/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3016436 | Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3018095 | Leukocytes [#/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 4234268 | ANA measurement | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 4179789 | Smooth muscle antibody measurement | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 4015457 | Antibody to mitochondria measurement | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 37170564 | LKM 1 (liver-kidney microsomal 1) antibody arbitrary concentration in serum | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 44790054 | Anti liver cytosol type 1 antibody level | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 44790056 | Anti soluble liver antigen/liver-pancreas antibody level | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 2000000049 | Anti-gp210 antibody level | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. | ||
| narrower | 2000000050 | Anti-sp100 antibody level | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. | ||
| narrower | 4189395 | Perinuclear neutrophil cytoplasmic antibody level | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 3019198 | Lymphocytes [#/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 37399254 | Percentage lymphocytes | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 3017732 | Neutrophils [#/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 37398605 | Percentage neutrophils | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 3007090 | Glucose tolerance [Interpretation] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3007461 | Platelets [#/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3005456 | Potassium [Moles/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 21490733 | Potassium [Mass/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3045462 | Protein/Creatinine [Ratio] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3034426 | Prothrombin time (PT) | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 4141751 | Parathyroid hormone measurement | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 37170628 | Total protein mass concentration in urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 3026361 | Erythrocytes [#/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 37208985 | Schistocyte count in blood by automated count | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 3016293 | Bicarbonate [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3019550 | Sodium [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3000285 | Sodium [Moles/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3028833 | Bilirubin.total [Mass/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 40757494 | Bilirubin.total [Moles/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 4119650 | Total protein measurement | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||
| narrower | 3022038 | Triglyceride [Mass/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 42868692 | Triglyceride [Moles/volume] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 1469591 | Tubular cells [#/volume] in Urine sediment | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3034204 | Urea [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3020779 | Urea [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3037556 | Urate [Mass/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3026493 | Urate [Moles/volume] in Serum or Plasma | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3006661 | Calcium [Mass/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3018133 | Calcium [Moles/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3007733 | Chloride [Moles/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3017250 | Creatinine [Mass/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3009508 | Creatinine [Moles/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3026729 | Phosphate [Mass/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3022229 | Phosphate [Moles/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3016038 | Potassium [Moles/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3002582 | Erythrocytes [#/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 3003181 | Sodium [Moles/volume] in Urine | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. | ||
| narrower | 4308739 | Vitamin D measurement | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. | ||