PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Official URL: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-immunological-data-to-omop | Version: 0.1.0-ci-build | |||
| Draft as of 2026-09-28 | Computable Name: DmImmunologicalDataToOmop | |||
The OMOP concepts for each column of the DMv1.2 immunological_data table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. equivalent: the column's own concept; narrower: one of several concepts the column's values map to; relatedto: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).
This mapping does not specify any particular context of use.
Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies
| Source Concept Details | Relationship | Target Concept Details | Comment | ||
| Codes from PROTECT-CHILD Data Model Variables | Codes from OHDSI Standardized Vocabularies | ||||
| immunological_data.blood_group | immunological_data.blood_group | is equivalent to | 3002529 | ABO group [Type] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| is related to | 36308333 | Group A | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||
| is related to | 36309587 | Group B | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||
| is related to | 36311267 | Group AB | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||
| is related to | 36309715 | Group O | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||
| immunological_data.rh_factor | immunological_data.rh_factor | is equivalent to | 3003310 | Rh [Type] in Blood | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| is related to | 45884084 | Positive | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||
| is related to | 45878583 | Negative | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||
| immunological_data.hla_a_1 | immunological_data.hla_a_1 | is equivalent to | 3024471 | HLA-A [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_a_2 | immunological_data.hla_a_2 | is equivalent to | 3024471 | HLA-A [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_b_1 | immunological_data.hla_b_1 | is equivalent to | 3025311 | HLA-B [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_b_2 | immunological_data.hla_b_2 | is equivalent to | 3025311 | HLA-B [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_c_1 | immunological_data.hla_c_1 | is equivalent to | 3026777 | HLA-C [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_c_2 | immunological_data.hla_c_2 | is equivalent to | 3026777 | HLA-C [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_drb1_1 | immunological_data.hla_drb1_1 | is equivalent to | 40760417 | HLA-DRB1 [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_drb1_2 | immunological_data.hla_drb1_2 | is equivalent to | 40760417 | HLA-DRB1 [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_dp_1 | immunological_data.hla_dp_1 | is equivalent to | 3013862 | HLA-DP [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_dp_2 | immunological_data.hla_dp_2 | is equivalent to | 3013862 | HLA-DP [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_dqb1_1 | immunological_data.hla_dqb1_1 | is equivalent to | 3038881 | HLA-DQB1 [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.hla_dqb1_2 | immunological_data.hla_dqb1_2 | is equivalent to | 3038881 | HLA-DQB1 [Type] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| immunological_data.mfi | immunological_data.mfi | narrower | 2000000051 | MFI category: Weak Reaction (500-2k) | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. |
| narrower | 2000000052 | MFI category: Moderate Reaction (2k-4k) | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. | ||
| narrower | 2000000053 | MFI category: Strong Reaction (>4k) | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. | ||
| immunological_data.banff_category | immunological_data.banff_category | narrower | 2000000044 | Banff Classification of Allograft Pathology: Category 1 | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. |
| narrower | 2000000045 | Banff Classification of Allograft Pathology: Category 2 | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. | ||
| narrower | 2000000046 | Banff Classification of Allograft Pathology: Category 3 | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. | ||
| narrower | 2000000047 | Banff Classification of Allograft Pathology: Category 4 | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. | ||
| narrower | 2000000048 | Banff Classification of Allograft Pathology: Category 5 | OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD. | ||
| immunological_data.ihc_if_c4d | immunological_data.ihc_if_c4d | is equivalent to | 4015468 | Complement C4d measurement | OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED. |
| is related to | 9189 | Negative | OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED. | ||
| is related to | 9191 | Positive | OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED. | ||
| immunological_data.anca | immunological_data.anca | is equivalent to | 3009628 | Neutrophil cytoplasmic Ab [Presence] in Serum | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| is related to | 45884084 | Positive | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||
| is related to | 45878583 | Negative | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||
| immunological_data.anti_hla_antibodies | immunological_data.anti_hla_antibodies | is equivalent to | 3035516 | HLA Ab [Presence] | OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC. |
| is related to | 45884084 | Positive | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||
| is related to | 45878583 | Negative | OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC. | ||