PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
<http://hl7.org/fhir/ConceptMap/dm-clinical-event-to-omop> a fhir:ConceptMap ;
fhir:nodeRole fhir:treeRoot ;
fhir:Resource.id [ fhir:value "dm-clinical-event-to-omop"] ;
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ] ;
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap dm-clinical-event-to-omop</b></p><a name=\"dm-clinical-event-to-omop\"> </a><a name=\"hcdm-clinical-event-to-omop\"> </a><p>This mapping does not specify any particular context of use.</p><br/><p>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\">OHDSI Standardized Vocabularies</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td><td><b>Comment</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-dm-variable-cs.html\" title=\"https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs\">PROTECT-CHILD Data Model Variables</a></td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\" title=\"https://fhir-terminology.ohdsi.org\">OHDSI Standardized Vocabularies</a></td><td/></tr><tr><td style=\"border-right-width: 0px\">clinical_event.dgf</td><td style=\"border-left-width: 0px\">clinical_event.dgf</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">2000000032</td><td style=\"border-left-width: 0px\">Delayed graft function</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">clinical_event.vascular_complication_type</td><td style=\"border-left-width: 0px; border-bottom-style: none\">clinical_event.vascular_complication_type</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4223098</td><td style=\"border-left-width: 0px\">Hepatic artery thrombosis</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">317003</td><td style=\"border-left-width: 0px\">Compression of vein</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">199837</td><td style=\"border-left-width: 0px\">Portal vein thrombosis</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px\">clinical_event.episodes_aki_after_ltx</td><td style=\"border-left-width: 0px\">clinical_event.episodes_aki_after_ltx</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">197320</td><td style=\"border-left-width: 0px\">Acute kidney injury</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px\">clinical_event.histologic_evidence_cni_toxicity</td><td style=\"border-left-width: 0px\">clinical_event.histologic_evidence_cni_toxicity</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">2000000035</td><td style=\"border-left-width: 0px\">Histological evidence of CNI toxicity</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.</td></tr><tr><td style=\"border-right-width: 0px\">clinical_event.hypoxic_ischemic_event_pltx</td><td style=\"border-left-width: 0px\">clinical_event.hypoxic_ischemic_event_pltx</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">2000000026</td><td style=\"border-left-width: 0px\">Hypoxic ischemic event</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">clinical_event.dialysis_type</td><td style=\"border-left-width: 0px; border-bottom-style: none\">clinical_event.dialysis_type</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4120120</td><td style=\"border-left-width: 0px\">Hemodialysis</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4324124</td><td style=\"border-left-width: 0px\">Peritoneal dialysis</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">clinical_event.treatment_adherence</td><td style=\"border-left-width: 0px; border-bottom-style: none\">clinical_event.treatment_adherence</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">36031908</td><td style=\"border-left-width: 0px\">Adherence to treatment</td><td>OMOP OBSERVATION.observation_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">36032717</td><td style=\"border-left-width: 0px\">Adherent to treatment</td><td>OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">36032471</td><td style=\"border-left-width: 0px\">Not adherent to treatment</td><td>OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px\">clinical_event.date_entry_transplant_list</td><td style=\"border-left-width: 0px\">clinical_event.date_entry_transplant_list</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">43020581</td><td style=\"border-left-width: 0px\">On waiting list for organ transplant</td><td>OMOP OBSERVATION.observation_concept_id; vocabulary —.</td></tr></table></div>"
] ;
fhir:ConceptMap.url [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-clinical-event-to-omop"] ;
fhir:ConceptMap.version [ fhir:value "0.1.0-ci-build"] ;
fhir:ConceptMap.name [ fhir:value "DmClinicalEventToOmop"] ;
fhir:ConceptMap.title [ fhir:value "DM clinical_event → OMOP"] ;
fhir:ConceptMap.status [ fhir:value "draft"] ;
fhir:ConceptMap.experimental [ fhir:value "false"^^xsd:boolean] ;
fhir:ConceptMap.date [ fhir:value "2026-09-28T06:51:47+00:00"^^xsd:dateTime] ;
fhir:ConceptMap.publisher [ fhir:value "Protect Child"] ;
fhir:ConceptMap.contact [
fhir:index 0 ;
fhir:ContactDetail.name [ fhir:value "Protect Child" ] ;
fhir:ContactDetail.telecom [
fhir:index 0 ;
fhir:ContactPoint.system [ fhir:value "url" ] ;
fhir:ContactPoint.value [ fhir:value "https://protect-child.eu/" ]
]
] ;
fhir:ConceptMap.description [ fhir:value "The OMOP concepts for each column of the DMv1.2 clinical_event table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary)."] ;
fhir:ConceptMap.group [
fhir:index 0 ;
fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs" ] ;
fhir:ConceptMap.group.target [ fhir:value "https://fhir-terminology.ohdsi.org" ] ;
fhir:ConceptMap.group.element [
fhir:index 0 ;
fhir:ConceptMap.group.element.code [ fhir:value "clinical_event.dgf" ] ;
fhir:ConceptMap.group.element.target [
fhir:index 0 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "2000000032" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Delayed graft function" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD." ]
]
], [
fhir:index 1 ;
fhir:ConceptMap.group.element.code [ fhir:value "clinical_event.vascular_complication_type" ] ;
fhir:ConceptMap.group.element.target [
fhir:index 0 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "4223098" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Hepatic artery thrombosis" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED." ]
], [
fhir:index 1 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "317003" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Compression of vein" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED." ]
], [
fhir:index 2 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "199837" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Portal vein thrombosis" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED." ]
]
], [
fhir:index 2 ;
fhir:ConceptMap.group.element.code [ fhir:value "clinical_event.episodes_aki_after_ltx" ] ;
fhir:ConceptMap.group.element.target [
fhir:index 0 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "197320" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Acute kidney injury" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED." ]
]
], [
fhir:index 3 ;
fhir:ConceptMap.group.element.code [ fhir:value "clinical_event.histologic_evidence_cni_toxicity" ] ;
fhir:ConceptMap.group.element.target [
fhir:index 0 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "2000000035" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Histological evidence of CNI toxicity" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD." ]
]
], [
fhir:index 4 ;
fhir:ConceptMap.group.element.code [ fhir:value "clinical_event.hypoxic_ischemic_event_pltx" ] ;
fhir:ConceptMap.group.element.target [
fhir:index 0 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "2000000026" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Hypoxic ischemic event" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD." ]
]
], [
fhir:index 5 ;
fhir:ConceptMap.group.element.code [ fhir:value "clinical_event.dialysis_type" ] ;
fhir:ConceptMap.group.element.target [
fhir:index 0 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "4120120" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Hemodialysis" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED." ]
], [
fhir:index 1 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "4324124" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Peritoneal dialysis" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "narrower" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED." ]
]
], [
fhir:index 6 ;
fhir:ConceptMap.group.element.code [ fhir:value "clinical_event.treatment_adherence" ] ;
fhir:ConceptMap.group.element.target [
fhir:index 0 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "36031908" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Adherence to treatment" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.observation_concept_id; vocabulary LOINC." ]
], [
fhir:index 1 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "36032717" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Adherent to treatment" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC." ]
], [
fhir:index 2 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "36032471" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "Not adherent to treatment" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC." ]
]
], [
fhir:index 7 ;
fhir:ConceptMap.group.element.code [ fhir:value "clinical_event.date_entry_transplant_list" ] ;
fhir:ConceptMap.group.element.target [
fhir:index 0 ;
fhir:ConceptMap.group.element.target.code [ fhir:value "43020581" ] ;
fhir:ConceptMap.group.element.target.display [ fhir:value "On waiting list for organ transplant" ] ;
fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
fhir:ConceptMap.group.element.target.comment [ fhir:value "OMOP OBSERVATION.observation_concept_id; vocabulary —." ]
]
]
] .
# - ontology header ------------------------------------------------------------
<http://hl7.org/fhir/ConceptMap/dm-clinical-event-to-omop.ttl> a owl:Ontology ;
owl:imports fhir:fhir.ttl ;
owl:versionIRI <http://build.fhir.org/ConceptMap/dm-clinical-event-to-omop.ttl> .
IG © 2025 Protect Child. Package hl7.eu.fhir.protect-child#0.1.0-ci-build based on FHIR 4.0.1. Generated 2026-09-28
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