PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
{
"resourceType" : "ConceptMap",
"id" : "dm-clinical-event-to-omop",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap dm-clinical-event-to-omop</b></p><a name=\"dm-clinical-event-to-omop\"> </a><a name=\"hcdm-clinical-event-to-omop\"> </a><p>This mapping does not specify any particular context of use.</p><br/><p>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\">OHDSI Standardized Vocabularies</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td><td><b>Comment</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-dm-variable-cs.html\" title=\"https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs\">PROTECT-CHILD Data Model Variables</a></td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\" title=\"https://fhir-terminology.ohdsi.org\">OHDSI Standardized Vocabularies</a></td><td/></tr><tr><td style=\"border-right-width: 0px\">clinical_event.dgf</td><td style=\"border-left-width: 0px\">clinical_event.dgf</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">2000000032</td><td style=\"border-left-width: 0px\">Delayed graft function</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">clinical_event.vascular_complication_type</td><td style=\"border-left-width: 0px; border-bottom-style: none\">clinical_event.vascular_complication_type</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4223098</td><td style=\"border-left-width: 0px\">Hepatic artery thrombosis</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">317003</td><td style=\"border-left-width: 0px\">Compression of vein</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">199837</td><td style=\"border-left-width: 0px\">Portal vein thrombosis</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px\">clinical_event.episodes_aki_after_ltx</td><td style=\"border-left-width: 0px\">clinical_event.episodes_aki_after_ltx</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">197320</td><td style=\"border-left-width: 0px\">Acute kidney injury</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px\">clinical_event.histologic_evidence_cni_toxicity</td><td style=\"border-left-width: 0px\">clinical_event.histologic_evidence_cni_toxicity</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">2000000035</td><td style=\"border-left-width: 0px\">Histological evidence of CNI toxicity</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.</td></tr><tr><td style=\"border-right-width: 0px\">clinical_event.hypoxic_ischemic_event_pltx</td><td style=\"border-left-width: 0px\">clinical_event.hypoxic_ischemic_event_pltx</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">2000000026</td><td style=\"border-left-width: 0px\">Hypoxic ischemic event</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">clinical_event.dialysis_type</td><td style=\"border-left-width: 0px; border-bottom-style: none\">clinical_event.dialysis_type</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4120120</td><td style=\"border-left-width: 0px\">Hemodialysis</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4324124</td><td style=\"border-left-width: 0px\">Peritoneal dialysis</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">clinical_event.treatment_adherence</td><td style=\"border-left-width: 0px; border-bottom-style: none\">clinical_event.treatment_adherence</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">36031908</td><td style=\"border-left-width: 0px\">Adherence to treatment</td><td>OMOP OBSERVATION.observation_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">36032717</td><td style=\"border-left-width: 0px\">Adherent to treatment</td><td>OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">36032471</td><td style=\"border-left-width: 0px\">Not adherent to treatment</td><td>OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px\">clinical_event.date_entry_transplant_list</td><td style=\"border-left-width: 0px\">clinical_event.date_entry_transplant_list</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">43020581</td><td style=\"border-left-width: 0px\">On waiting list for organ transplant</td><td>OMOP OBSERVATION.observation_concept_id; vocabulary —.</td></tr></table></div>"
},
"url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-clinical-event-to-omop",
"version" : "0.1.0-ci-build",
"name" : "DmClinicalEventToOmop",
"title" : "DM clinical_event → OMOP",
"status" : "draft",
"experimental" : false,
"date" : "2026-09-28T06:51:47+00:00",
"publisher" : "Protect Child",
"contact" : [
{
"name" : "Protect Child",
"telecom" : [
{
"system" : "url",
"value" : "https://protect-child.eu/"
}
]
}
],
"description" : "The OMOP concepts for each column of the DMv1.2 clinical_event table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
"group" : [
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
"target" : "https://fhir-terminology.ohdsi.org",
"element" : [
{
"code" : "clinical_event.dgf",
"target" : [
{
"code" : "2000000032",
"display" : "Delayed graft function",
"equivalence" : "equivalent",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
}
]
},
{
"code" : "clinical_event.vascular_complication_type",
"target" : [
{
"code" : "4223098",
"display" : "Hepatic artery thrombosis",
"equivalence" : "narrower",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
},
{
"code" : "317003",
"display" : "Compression of vein",
"equivalence" : "narrower",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
},
{
"code" : "199837",
"display" : "Portal vein thrombosis",
"equivalence" : "narrower",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
}
]
},
{
"code" : "clinical_event.episodes_aki_after_ltx",
"target" : [
{
"code" : "197320",
"display" : "Acute kidney injury",
"equivalence" : "equivalent",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
}
]
},
{
"code" : "clinical_event.histologic_evidence_cni_toxicity",
"target" : [
{
"code" : "2000000035",
"display" : "Histological evidence of CNI toxicity",
"equivalence" : "equivalent",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
}
]
},
{
"code" : "clinical_event.hypoxic_ischemic_event_pltx",
"target" : [
{
"code" : "2000000026",
"display" : "Hypoxic ischemic event",
"equivalence" : "equivalent",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
}
]
},
{
"code" : "clinical_event.dialysis_type",
"target" : [
{
"code" : "4120120",
"display" : "Hemodialysis",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4324124",
"display" : "Peritoneal dialysis",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
}
]
},
{
"code" : "clinical_event.treatment_adherence",
"target" : [
{
"code" : "36031908",
"display" : "Adherence to treatment",
"equivalence" : "equivalent",
"comment" : "OMOP OBSERVATION.observation_concept_id; vocabulary LOINC."
},
{
"code" : "36032717",
"display" : "Adherent to treatment",
"equivalence" : "relatedto",
"comment" : "OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC."
},
{
"code" : "36032471",
"display" : "Not adherent to treatment",
"equivalence" : "relatedto",
"comment" : "OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC."
}
]
},
{
"code" : "clinical_event.date_entry_transplant_list",
"target" : [
{
"code" : "43020581",
"display" : "On waiting list for organ transplant",
"equivalence" : "equivalent",
"comment" : "OMOP OBSERVATION.observation_concept_id; vocabulary —."
}
]
}
]
}
]
}