PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

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: BioSample logical model → FHIR - XML Representation

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<ConceptMap xmlns="http://hl7.org/fhir">
  <id value="bio-sample-lm-to-fhir"/>
  <text>
    <status value="additional"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><table class="grid"><tr><td><b>DM field</b></td><td><b>Target profile</b></td><td><b>FHIR element</b></td><td><b>Relationship</b></td><td><b>Comment</b></td></tr><tr><td><a href="StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.bioSampleId">bio_sample_id</a></td><td>biosample</td><td><a href="StructureDefinition-biosample.html#s-Specimen.identifier.value">Specimen.identifier.value</a></td><td>equivalent</td><td/></tr><tr><td><a href="StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.visitId">visit_id</a></td><td>biosample</td><td><a href="StructureDefinition-biosample.html#s-Specimen.extension:visit_id">Specimen.extension:visit_id</a></td><td>equivalent</td><td>FHIR path: Specimen.extension[visit_id]. BioSampleVisitRef</td></tr><tr><td><a href="StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.collectionDate">collection_date</a></td><td>biosample</td><td><a href="StructureDefinition-biosample.html#s-Specimen.collection.collected_x_">Specimen.collection.collected[x]</a></td><td>equivalent</td><td>FHIR path: Specimen.collection.collectedDateTime.</td></tr><tr><td><a href="StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.sendIngemmDate">send_ingemm_date</a></td><td>biosample</td><td><a href="StructureDefinition-biosample.html#s-Specimen.receivedTime">Specimen.receivedTime</a></td><td>equivalent</td><td/></tr><tr><td><a href="StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.genomicSample">genomic_sample</a></td><td>biosample-analysis-request</td><td><a href="StructureDefinition-biosample-analysis-request.html#s-ServiceRequest.code">ServiceRequest.code</a></td><td>related to</td><td>BioSampleAnalysisRequest with specimen = Reference(BioSample); false → doNotPerform = true; blank → no ServiceRequest</td></tr><tr><td><a href="StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.epigenomicSample">epigenomic_sample</a></td><td>biosample-analysis-request</td><td><a href="StructureDefinition-biosample-analysis-request.html#s-ServiceRequest.code">ServiceRequest.code</a></td><td>related to</td><td>BioSampleAnalysisRequest with specimen = Reference(BioSample); false → doNotPerform = true; blank → no ServiceRequest</td></tr></table></div>
  </text>
  <url
       value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/bio-sample-lm-to-fhir"/>
  <version value="0.1.0-ci-build"/>
  <name value="BioSampleLmToFhir"/>
  <title value="BioSample logical model → FHIR"/>
  <status value="draft"/>
  <experimental value="false"/>
  <date value="2026-09-28T06:51:47+00:00"/>
  <publisher value="Protect Child"/>
  <contact>
    <name value="Protect Child"/>
    <telecom>
      <system value="url"/>
      <value value="https://protect-child.eu/"/>
    </telecom>
  </contact>
  <description
               value="Where each field of the BioSample logical model lands in this guide's profiles. Generated from the model-map page; one group per target profile. Equivalence `relatedto` marks a field that is derived, split or recoded on the way."/>
  <group>
    <source
            value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcBioSampleLm"/>
    <target
            value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample"/>
    <element>
      <code value="pcBioSampleLm.bioSampleId"/>
      <display value="bio_sample_id"/>
      <target>
        <code value="Specimen.identifier.value"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
    <element>
      <code value="pcBioSampleLm.visitId"/>
      <display value="visit_id"/>
      <target>
        <code value="Specimen.extension:visit_id"/>
        <equivalence value="equivalent"/>
        <comment
                 value="FHIR path: Specimen.extension[visit_id]. BioSampleVisitRef"/>
      </target>
    </element>
    <element>
      <code value="pcBioSampleLm.collectionDate"/>
      <display value="collection_date"/>
      <target>
        <code value="Specimen.collection.collected[x]"/>
        <equivalence value="equivalent"/>
        <comment value="FHIR path: Specimen.collection.collectedDateTime."/>
      </target>
    </element>
    <element>
      <code value="pcBioSampleLm.sendIngemmDate"/>
      <display value="send_ingemm_date"/>
      <target>
        <code value="Specimen.receivedTime"/>
        <equivalence value="equivalent"/>
      </target>
    </element>
  </group>
  <group>
    <source
            value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcBioSampleLm"/>
    <target
            value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-analysis-request"/>
    <element>
      <code value="pcBioSampleLm.genomicSample"/>
      <display value="genomic_sample"/>
      <target>
        <code value="ServiceRequest.code"/>
        <equivalence value="relatedto"/>
        <comment
                 value="BioSampleAnalysisRequest with specimen = Reference(BioSample); false → doNotPerform = true; blank → no ServiceRequest"/>
      </target>
    </element>
    <element>
      <code value="pcBioSampleLm.epigenomicSample"/>
      <display value="epigenomic_sample"/>
      <target>
        <code value="ServiceRequest.code"/>
        <equivalence value="relatedto"/>
        <comment
                 value="BioSampleAnalysisRequest with specimen = Reference(BioSample); false → doNotPerform = true; blank → no ServiceRequest"/>
      </target>
    </element>
  </group>
</ConceptMap>