PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: BioSample logical model → FHIR - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/ConceptMap/bio-sample-lm-to-fhir> a fhir:ConceptMap ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "bio-sample-lm-to-fhir"] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "additional" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><table class=\"grid\"><tr><td><b>DM field</b></td><td><b>Target profile</b></td><td><b>FHIR element</b></td><td><b>Relationship</b></td><td><b>Comment</b></td></tr><tr><td><a href=\"StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.bioSampleId\">bio_sample_id</a></td><td>biosample</td><td><a href=\"StructureDefinition-biosample.html#s-Specimen.identifier.value\">Specimen.identifier.value</a></td><td>equivalent</td><td/></tr><tr><td><a href=\"StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.visitId\">visit_id</a></td><td>biosample</td><td><a href=\"StructureDefinition-biosample.html#s-Specimen.extension:visit_id\">Specimen.extension:visit_id</a></td><td>equivalent</td><td>FHIR path: Specimen.extension[visit_id]. BioSampleVisitRef</td></tr><tr><td><a href=\"StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.collectionDate\">collection_date</a></td><td>biosample</td><td><a href=\"StructureDefinition-biosample.html#s-Specimen.collection.collected_x_\">Specimen.collection.collected[x]</a></td><td>equivalent</td><td>FHIR path: Specimen.collection.collectedDateTime.</td></tr><tr><td><a href=\"StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.sendIngemmDate\">send_ingemm_date</a></td><td>biosample</td><td><a href=\"StructureDefinition-biosample.html#s-Specimen.receivedTime\">Specimen.receivedTime</a></td><td>equivalent</td><td/></tr><tr><td><a href=\"StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.genomicSample\">genomic_sample</a></td><td>biosample-analysis-request</td><td><a href=\"StructureDefinition-biosample-analysis-request.html#s-ServiceRequest.code\">ServiceRequest.code</a></td><td>related to</td><td>BioSampleAnalysisRequest with specimen = Reference(BioSample); false → doNotPerform = true; blank → no ServiceRequest</td></tr><tr><td><a href=\"StructureDefinition-pcBioSampleLm.html#s-pcBioSampleLm.epigenomicSample\">epigenomic_sample</a></td><td>biosample-analysis-request</td><td><a href=\"StructureDefinition-biosample-analysis-request.html#s-ServiceRequest.code\">ServiceRequest.code</a></td><td>related to</td><td>BioSampleAnalysisRequest with specimen = Reference(BioSample); false → doNotPerform = true; blank → no ServiceRequest</td></tr></table></div>"
  ] ;
  fhir:ConceptMap.url [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/bio-sample-lm-to-fhir"] ;
  fhir:ConceptMap.version [ fhir:value "0.1.0-ci-build"] ;
  fhir:ConceptMap.name [ fhir:value "BioSampleLmToFhir"] ;
  fhir:ConceptMap.title [ fhir:value "BioSample logical model → FHIR"] ;
  fhir:ConceptMap.status [ fhir:value "draft"] ;
  fhir:ConceptMap.experimental [ fhir:value "false"^^xsd:boolean] ;
  fhir:ConceptMap.date [ fhir:value "2026-09-28T06:51:47+00:00"^^xsd:dateTime] ;
  fhir:ConceptMap.publisher [ fhir:value "Protect Child"] ;
  fhir:ConceptMap.contact [
     fhir:index 0 ;
     fhir:ContactDetail.name [ fhir:value "Protect Child" ] ;
     fhir:ContactDetail.telecom [
       fhir:index 0 ;
       fhir:ContactPoint.system [ fhir:value "url" ] ;
       fhir:ContactPoint.value [ fhir:value "https://protect-child.eu/" ]
     ]
  ] ;
  fhir:ConceptMap.description [ fhir:value "Where each field of the BioSample logical model lands in this guide's profiles. Generated from the model-map page; one group per target profile. Equivalence `relatedto` marks a field that is derived, split or recoded on the way."] ;
  fhir:ConceptMap.group [
     fhir:index 0 ;
     fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcBioSampleLm" ] ;
     fhir:ConceptMap.group.target [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample" ] ;
     fhir:ConceptMap.group.element [
       fhir:index 0 ;
       fhir:ConceptMap.group.element.code [ fhir:value "pcBioSampleLm.bioSampleId" ] ;
       fhir:ConceptMap.group.element.display [ fhir:value "bio_sample_id" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "Specimen.identifier.value" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ]
       ]
     ], [
       fhir:index 1 ;
       fhir:ConceptMap.group.element.code [ fhir:value "pcBioSampleLm.visitId" ] ;
       fhir:ConceptMap.group.element.display [ fhir:value "visit_id" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "Specimen.extension:visit_id" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "FHIR path: Specimen.extension[visit_id]. BioSampleVisitRef" ]
       ]
     ], [
       fhir:index 2 ;
       fhir:ConceptMap.group.element.code [ fhir:value "pcBioSampleLm.collectionDate" ] ;
       fhir:ConceptMap.group.element.display [ fhir:value "collection_date" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "Specimen.collection.collected[x]" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "FHIR path: Specimen.collection.collectedDateTime." ]
       ]
     ], [
       fhir:index 3 ;
       fhir:ConceptMap.group.element.code [ fhir:value "pcBioSampleLm.sendIngemmDate" ] ;
       fhir:ConceptMap.group.element.display [ fhir:value "send_ingemm_date" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "Specimen.receivedTime" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ]
       ]
     ]
  ], [
     fhir:index 1 ;
     fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pcBioSampleLm" ] ;
     fhir:ConceptMap.group.target [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/biosample-analysis-request" ] ;
     fhir:ConceptMap.group.element [
       fhir:index 0 ;
       fhir:ConceptMap.group.element.code [ fhir:value "pcBioSampleLm.genomicSample" ] ;
       fhir:ConceptMap.group.element.display [ fhir:value "genomic_sample" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "ServiceRequest.code" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "BioSampleAnalysisRequest with specimen = Reference(BioSample); false → doNotPerform = true; blank → no ServiceRequest" ]
       ]
     ], [
       fhir:index 1 ;
       fhir:ConceptMap.group.element.code [ fhir:value "pcBioSampleLm.epigenomicSample" ] ;
       fhir:ConceptMap.group.element.display [ fhir:value "epigenomic_sample" ] ;
       fhir:ConceptMap.group.element.target [
         fhir:index 0 ;
         fhir:ConceptMap.group.element.target.code [ fhir:value "ServiceRequest.code" ] ;
         fhir:ConceptMap.group.element.target.equivalence [ fhir:value "relatedto" ] ;
         fhir:ConceptMap.group.element.target.comment [ fhir:value "BioSampleAnalysisRequest with specimen = Reference(BioSample); false → doNotPerform = true; blank → no ServiceRequest" ]
       ]
     ]
  ] .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/ConceptMap/bio-sample-lm-to-fhir.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/ConceptMap/bio-sample-lm-to-fhir.ttl> .