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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

: Kidney example — BK virus surveillance panel - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Observation/KidneyMicrobiology1> a fhir:Observation ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "KidneyMicrobiology1"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology" ;
       fhir:index 0 ;
       fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/microbiology>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation KidneyMicrobiology1</b></p><a name=\"KidneyMicrobiology1\"> </a><a name=\"hcKidneyMicrobiology1\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-microbiology.html\">Microbiology</a></p></div><p><b>Transplant type context</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/transplant-type-cs kidney}\">Kidney transplant</span></p><p><b>identifier</b>: <a href=\"NamingSystem-NsProtectChildId.html\" title=\"Single identifier namespace for PROTECT-CHILD record business identifiers (patient, donor, visit, transplant, and all per-visit clinical/lab/medication/specimen/event records). The resource type distinguishes the kind of record. Identifiers follow one convention: TOKEN-CENTRE-SEQUENCE, for example REC-1-0001 (patient, centre 1, sequence 1) or LBR-1-0006 (lab result); study-wide catalogue entries such as lab tests are not centre-qualified and use TOKEN-SEQUENCE, for example LBT-0001. Identifiers carry no clinical meaning.\">ProtectChildId</a>/MIC-2-0001</p><p><b>status</b>: Final</p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs microbiology-panel}\">Microbiology studies panel</span></p><p><b>subject</b>: <a href=\"Patient-KidneyRecipient1.html\">Anonymous Patient Male, DoB Unknown ( https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/protect-child-id#ProtectChildId#REC-2-0001)</a></p><p><b>encounter</b>: <a href=\"Encounter-KidneyVisitRejection1.html\">Encounter: identifier = https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/protect-child-id#ProtectChildId#VIS-2-0003; status = finished; class = ambulatory (ActCode#AMB); type = Clinical Event visit; period = 2024-06-20 --&gt; 2024-06-20</a></p><p><b>effective</b>: 2024-06-20</p><p><b>performer</b>: <a href=\"Organization-PCCenter2Padova.html\">Organization University of Padova</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs blood-bkv-dna}\">Blood BKV-DNA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs blood-bkv-dna-copies}\">Blood BKV-DNA copies/ml</span></p><p><b>value</b>: 42000 copies/mL<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM  code{copies}/mL = '{copies}/mL')</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs urine-bkv-dna}\">Urine BKV-DNA</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs bkv-dna-kidney-biopsy}\">BKV-DNA on kidney biopsy</span></p><p><b>value</b>: true</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs bkv-fish-kidney-biopsy}\">BKV FISH on kidney biopsy</span></p><p><b>value</b>: true</p></blockquote></div>"
  ] ;
  fhir:DomainResource.extension [
     fhir:index 0 ;
     fhir:Extension.url [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/transplant-type-ext" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/transplant-type-cs" ] ;
         fhir:Coding.code [ fhir:value "kidney" ] ;
         fhir:Coding.display [ fhir:value "Kidney transplant" ]
       ]
     ]
  ] ;
  fhir:Observation.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/protect-child-id" ] ;
     fhir:Identifier.value [ fhir:value "MIC-2-0001" ]
  ] ;
  fhir:Observation.status [ fhir:value "final"] ;
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
       fhir:Coding.code [ fhir:value "microbiology-panel" ] ;
       fhir:Coding.display [ fhir:value "Microbiology studies panel" ]
     ]
  ] ;
  fhir:Observation.subject [
     fhir:link <http://hl7.org/fhir/Patient/KidneyRecipient1> ;
     fhir:Reference.reference [ fhir:value "Patient/KidneyRecipient1" ]
  ] ;
  fhir:Observation.encounter [
     fhir:link <http://hl7.org/fhir/Encounter/KidneyVisitRejection1> ;
     fhir:Reference.reference [ fhir:value "Encounter/KidneyVisitRejection1" ]
  ] ;
  fhir:Observation.effectiveDateTime [ fhir:value "2024-06-20"^^xsd:date] ;
  fhir:Observation.performer [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/Organization/PCCenter2Padova> ;
     fhir:Reference.reference [ fhir:value "Organization/PCCenter2Padova" ]
  ] ;
  fhir:Observation.component [
     fhir:index 0 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "blood-bkv-dna" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 1 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "blood-bkv-dna-copies" ]
       ]
     ] ;
     fhir:Observation.component.valueQuantity [
       fhir:Quantity.value [ fhir:value "42000"^^xsd:decimal ] ;
       fhir:Quantity.unit [ fhir:value "copies/mL" ] ;
       fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ] ;
       fhir:Quantity.code [ fhir:value "{copies}/mL" ]
     ]
  ], [
     fhir:index 2 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "urine-bkv-dna" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 3 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "bkv-dna-kidney-biopsy" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ], [
     fhir:index 4 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ;
         fhir:Coding.code [ fhir:value "bkv-fish-kidney-biopsy" ]
       ]
     ] ;
     fhir:Observation.component.valueBoolean [ fhir:value "true"^^xsd:boolean ]
  ] .

<http://hl7.org/fhir/Patient/KidneyRecipient1> a fhir:Patient .

<http://hl7.org/fhir/Encounter/KidneyVisitRejection1> a fhir:Encounter .

<http://hl7.org/fhir/Organization/PCCenter2Padova> a fhir:Organization .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Observation/KidneyMicrobiology1.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/Observation/KidneyMicrobiology1.ttl> .