PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
{
"resourceType" : "ConceptMap",
"id" : "dm-patient-to-omop",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap dm-patient-to-omop</b></p><a name=\"dm-patient-to-omop\"> </a><a name=\"hcdm-patient-to-omop\"> </a><p>This mapping does not specify any particular context of use.</p><br/><p>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\">OHDSI Standardized Vocabularies</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td><td><b>Comment</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-dm-variable-cs.html\" title=\"https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs\">PROTECT-CHILD Data Model Variables</a></td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\" title=\"https://fhir-terminology.ohdsi.org\">OHDSI Standardized Vocabularies</a></td><td/></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">patient.gender</td><td style=\"border-left-width: 0px; border-bottom-style: none\">patient.gender</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">8532</td><td style=\"border-left-width: 0px\">FEMALE</td><td>OMOP PERSON.gender_concept_id; vocabulary Gender.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">8507</td><td style=\"border-left-width: 0px\">MALE</td><td>OMOP PERSON.gender_concept_id; vocabulary Gender.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">patient.max_pra</td><td style=\"border-left-width: 0px; border-bottom-style: none\">patient.max_pra</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">21493706</td><td style=\"border-left-width: 0px\">Calculated panel reactive antibody - Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">8554</td><td style=\"border-left-width: 0px\">percent</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">patient.last_pra</td><td style=\"border-left-width: 0px; border-bottom-style: none\">patient.last_pra</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">21493706</td><td style=\"border-left-width: 0px\">Calculated panel reactive antibody - Serum</td><td>OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">8554</td><td style=\"border-left-width: 0px\">percent</td><td>OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.</td></tr><tr><td style=\"border-right-width: 0px\">patient.date_histological_diag</td><td style=\"border-left-width: 0px\">patient.date_histological_diag</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">2000000042</td><td style=\"border-left-width: 0px\">Primary diagnosis confirmed by histology</td><td>OMOP OBSERVATION.observation_concept_id; vocabulary PROTECT-CHILD.</td></tr><tr><td style=\"border-right-width: 0px\">patient.diag_primary_disease</td><td style=\"border-left-width: 0px\">patient.diag_primary_disease</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">32902</td><td style=\"border-left-width: 0px\">Primary diagnosis</td><td>OMOP CONDITION_OCCURRENCE.condition_status_concept_id; vocabulary Condition Status.</td></tr></table></div>"
},
"url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-patient-to-omop",
"version" : "0.1.0-ci-build",
"name" : "DmPatientToOmop",
"title" : "DM patient → OMOP",
"status" : "draft",
"experimental" : false,
"date" : "2026-09-28T06:51:47+00:00",
"publisher" : "Protect Child",
"contact" : [
{
"name" : "Protect Child",
"telecom" : [
{
"system" : "url",
"value" : "https://protect-child.eu/"
}
]
}
],
"description" : "The OMOP concepts for each column of the DMv1.2 patient table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
"group" : [
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
"target" : "https://fhir-terminology.ohdsi.org",
"element" : [
{
"code" : "patient.gender",
"target" : [
{
"code" : "8532",
"display" : "FEMALE",
"equivalence" : "narrower",
"comment" : "OMOP PERSON.gender_concept_id; vocabulary Gender."
},
{
"code" : "8507",
"display" : "MALE",
"equivalence" : "narrower",
"comment" : "OMOP PERSON.gender_concept_id; vocabulary Gender."
}
]
},
{
"code" : "patient.max_pra",
"target" : [
{
"code" : "21493706",
"display" : "Calculated panel reactive antibody - Serum",
"equivalence" : "equivalent",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
},
{
"code" : "8554",
"display" : "percent",
"equivalence" : "relatedto",
"comment" : "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
}
]
},
{
"code" : "patient.last_pra",
"target" : [
{
"code" : "21493706",
"display" : "Calculated panel reactive antibody - Serum",
"equivalence" : "equivalent",
"comment" : "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
},
{
"code" : "8554",
"display" : "percent",
"equivalence" : "relatedto",
"comment" : "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
}
]
},
{
"code" : "patient.date_histological_diag",
"target" : [
{
"code" : "2000000042",
"display" : "Primary diagnosis confirmed by histology",
"equivalence" : "equivalent",
"comment" : "OMOP OBSERVATION.observation_concept_id; vocabulary PROTECT-CHILD."
}
]
},
{
"code" : "patient.diag_primary_disease",
"target" : [
{
"code" : "32902",
"display" : "Primary diagnosis",
"equivalence" : "relatedto",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_status_concept_id; vocabulary Condition Status."
}
]
}
]
}
]
}