PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
@prefix fhir: <http://hl7.org/fhir/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- <http://hl7.org/fhir/ConceptMap/dm-microbiology-to-fhir> a fhir:ConceptMap ; fhir:nodeRole fhir:treeRoot ; fhir:Resource.id [ fhir:value "dm-microbiology-to-fhir"] ; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ] ; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap dm-microbiology-to-fhir</b></p><a name=\"dm-microbiology-to-fhir\"> </a><a name=\"hcdm-microbiology-to-fhir\"> </a><p>Mapping from <a href=\"ValueSet-dm-microbiology-variable-vs.html\">PROTECT-CHILD DM microbiology variables</a> to (not specified)</p><br/><p><b>Group 1 </b>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-v3-loinc.html\">Logical Observation Identifiers, Names and Codes (LOINC)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>microbiology.ebv_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>5002-1 (Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection)</td><td>MicrobiologyNucleicAcid.code</td></tr><tr><td>microbiology.ebv_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>36923-1 (Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection)</td><td>MicrobiologyViralLoad.code</td></tr><tr><td>microbiology.ebv_igm_anti_vca</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>30340-4 (Epstein Barr virus capsid IgM Ab [Presence] in Serum)</td><td>MicrobiologySerology.code. The OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen.</td></tr><tr><td>microbiology.ebv_igg_anti_vca</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>30339-6 (Epstein Barr virus capsid IgG Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.ebv_igg_ebna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>7883-2 (Epstein Barr virus nuclear IgG Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.cmv_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>4996-5 (Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection)</td><td>MicrobiologyNucleicAcid.code</td></tr><tr><td>microbiology.cmv_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>29604-6 (Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection)</td><td>MicrobiologyViralLoad.code</td></tr><tr><td>microbiology.cmv_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>30325-5 (Cytomegalovirus IgM Ab [Presence] in Serum or Plasma)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.cmv_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>13949-3 (Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.parvovirus_b19_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>50348-2 (Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection)</td><td>MicrobiologyNucleicAcid.code</td></tr><tr><td>microbiology.parvovirus_b19_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>49431-0 (Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection)</td><td>MicrobiologyViralLoad.code</td></tr><tr><td>microbiology.parvovirus_b19_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>29675-6 (Parvovirus B19 IgG Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.parvovirus_b19_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>7981-4 (Parvovirus B19 IgM Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.hsv_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>19106-4 (Herpes simplex virus IgG Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.hsv_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>25435-9 (Herpes simplex virus IgM Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.adenovirus_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>41162-9 (Adenovirus IgG Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.adenovirus_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>21054-2 (Adenovirus IgM Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.blood_adenovirus_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>86511-3 (Adenovirus DNA [Presence] in Blood by NAA with probe detection)</td><td>MicrobiologyNucleicAcid.code</td></tr><tr><td>microbiology.blood_adenovirus_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>49341-1 (Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection)</td><td>MicrobiologyViralLoad.code</td></tr><tr><td>microbiology.vzv_igg</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>19162-7 (Varicella zoster virus IgG Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.vzv_igm</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>21597-0 (Varicella zoster virus IgM Ab [Presence] in Serum)</td><td>MicrobiologySerology.code</td></tr><tr><td>microbiology.blood_bkv_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>63475-8 (BK virus DNA [Presence] in Blood)</td><td>MicrobiologyNucleicAcid.code</td></tr><tr><td>microbiology.blood_bkv_dna_copies</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>49345-2 (BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection)</td><td>MicrobiologyViralLoad.code</td></tr><tr><td>microbiology.urine_bkv_dna</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>33978-8 (BK virus DNA [Presence] in Urine by NAA with probe detection)</td><td>MicrobiologyNucleicAcid.code</td></tr><tr><td>microbiology.bkv_dna_kidney_biopsy</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>47251-4 (BK virus DNA [Presence] in Specimen by NAA with probe detection)</td><td>MicrobiologyNucleicAcid.code. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue.</td></tr><tr><td>microbiology.blood_colture</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>600-7 (Bacteria identified in Blood by Culture)</td><td>MicrobiologyCulture.code</td></tr><tr><td>microbiology.urine_colture</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>630-4 (Bacteria identified in Urine by Culture)</td><td>MicrobiologyCulture.code</td></tr></table><hr/><p><b>Group 2 </b>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <a href=\"CodeSystem-microbiology-cs.html\">PROTECT-CHILD Microbiology Local Codes</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>microbiology.ebv_igm_anti_ea</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>ebv-ea-igm (EBV early antigen IgM Ab [Presence] in Serum)</td><td>MicrobiologySerology.code. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader.</td></tr><tr><td>microbiology.bkv_fish_kidney_biopsy</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>bkv-dna-ish-tissue (BK virus DNA [Presence] in Tissue by in situ hybridization)</td><td>MicrobiologyNucleicAcid.code. LOINC has no in-situ hybridisation code for BK virus in tissue.</td></tr><tr><td>microbiology.ebv_hepatitis_liver</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>ebv-hepatitis-liver (EBV Hepatitis on liver)</td><td>MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); false → the same Condition with verificationStatus #refuted; blank → no Condition.</td></tr><tr><td>microbiology.evidence_bkvan</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent\" title=\"equivalent\">is equivalent to</a></td><td>evidence-bkvan (Histological evidence of BKVAN)</td><td>MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); No → the same Condition with verificationStatus #refuted; Unknown or blank → no Condition.</td></tr></table><hr/><p><b>Group 3 </b>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <code>unspecified code system</code></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>microbiology.other_positivity</td><td colspan=\"2\" style=\"background-color: #efefef\">(not mapped)</td><td style=\"background-color: #efefef\">MicrobiologyReport.conclusion. DiagnosticReport.conclusion (free text, no code)</td></tr></table></div>" ] ; fhir:ConceptMap.url [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-microbiology-to-fhir"] ; fhir:ConceptMap.version [ fhir:value "0.1.0-ci-build"] ; fhir:ConceptMap.name [ fhir:value "DmMicrobiologyToFhir"] ; fhir:ConceptMap.title [ fhir:value "DM microbiology columns → FHIR test codes"] ; fhir:ConceptMap.status [ fhir:value "draft"] ; fhir:ConceptMap.experimental [ fhir:value "true"^^xsd:boolean] ; fhir:ConceptMap.date [ fhir:value "2026-09-28T06:51:47+00:00"^^xsd:dateTime] ; fhir:ConceptMap.publisher [ fhir:value "Protect Child"] ; fhir:ConceptMap.contact [ fhir:index 0 ; fhir:ContactDetail.name [ fhir:value "Protect Child" ] ; fhir:ContactDetail.telecom [ fhir:index 0 ; fhir:ContactPoint.system [ fhir:value "url" ] ; fhir:ContactPoint.value [ fhir:value "https://protect-child.eu/" ] ] ] ; fhir:ConceptMap.description [ fhir:value "Maps each column of the DMv1.2 microbiology table to the code of the Observation (or Condition) it becomes. Targets are the default codes; MicrobiologySerologyVS, MicrobiologyNucleicAcidVS and MicrobiologyViralLoadVS list accepted specimen-, method- and donor-specific alternatives. other_positivity has no code: it maps to MicrobiologyReport.conclusion."] ; fhir:ConceptMap.sourceCanonical [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ValueSet/dm-microbiology-variable-vs" ; fhir:link <https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ValueSet/dm-microbiology-variable-vs> ] ; fhir:ConceptMap.group [ fhir:index 0 ; fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs" ] ; fhir:ConceptMap.group.target [ fhir:value "http://loinc.org" ] ; fhir:ConceptMap.group.element [ fhir:index 0 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.ebv_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "5002-1" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Epstein Barr virus DNA [Presence] in Blood by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyNucleicAcid.code" ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.ebv_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "36923-1" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Epstein Barr virus DNA [#/volume] (viral load) in Blood by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyViralLoad.code" ] ] ], [ fhir:index 2 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.ebv_igm_anti_vca" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "30340-4" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Epstein Barr virus capsid IgM Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code. The OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen." ] ] ], [ fhir:index 3 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.ebv_igg_anti_vca" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "30339-6" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Epstein Barr virus capsid IgG Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 4 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.ebv_igg_ebna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "7883-2" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Epstein Barr virus nuclear IgG Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 5 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.cmv_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "4996-5" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Cytomegalovirus DNA [Presence] in Blood by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyNucleicAcid.code" ] ] ], [ fhir:index 6 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.cmv_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "29604-6" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Cytomegalovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyViralLoad.code" ] ] ], [ fhir:index 7 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.cmv_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "30325-5" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Cytomegalovirus IgM Ab [Presence] in Serum or Plasma" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 8 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.cmv_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "13949-3" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Cytomegalovirus IgG Ab [Presence] in Serum or Plasma by Immunoassay" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 9 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.parvovirus_b19_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "50348-2" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Parvovirus B19 DNA [Presence] in Blood by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyNucleicAcid.code" ] ] ], [ fhir:index 10 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.parvovirus_b19_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "49431-0" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Parvovirus B19 DNA [#/volume] (viral load) in Blood by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyViralLoad.code" ] ] ], [ fhir:index 11 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.parvovirus_b19_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "29675-6" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Parvovirus B19 IgG Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 12 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.parvovirus_b19_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "7981-4" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Parvovirus B19 IgM Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 13 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.hsv_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "19106-4" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Herpes simplex virus IgG Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 14 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.hsv_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "25435-9" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Herpes simplex virus IgM Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 15 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.adenovirus_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "41162-9" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Adenovirus IgG Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 16 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.adenovirus_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "21054-2" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Adenovirus IgM Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 17 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.blood_adenovirus_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "86511-3" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Adenovirus DNA [Presence] in Blood by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyNucleicAcid.code" ] ] ], [ fhir:index 18 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.blood_adenovirus_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "49341-1" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Adenovirus DNA [#/volume] (viral load) in Blood by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyViralLoad.code" ] ] ], [ fhir:index 19 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.vzv_igg" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "19162-7" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Varicella zoster virus IgG Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 20 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.vzv_igm" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "21597-0" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Varicella zoster virus IgM Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code" ] ] ], [ fhir:index 21 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.blood_bkv_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "63475-8" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "BK virus DNA [Presence] in Blood" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyNucleicAcid.code" ] ] ], [ fhir:index 22 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.blood_bkv_dna_copies" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "49345-2" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "BK virus DNA [#/volume] (viral load) in Blood by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyViralLoad.code" ] ] ], [ fhir:index 23 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.urine_bkv_dna" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "33978-8" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "BK virus DNA [Presence] in Urine by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyNucleicAcid.code" ] ] ], [ fhir:index 24 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.bkv_dna_kidney_biopsy" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "47251-4" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "BK virus DNA [Presence] in Specimen by NAA with probe detection" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyNucleicAcid.code. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue." ] ] ], [ fhir:index 25 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.blood_colture" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "600-7" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Bacteria identified in Blood by Culture" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyCulture.code" ] ] ], [ fhir:index 26 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.urine_colture" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "630-4" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Bacteria identified in Urine by Culture" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyCulture.code" ] ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs" ] ; fhir:ConceptMap.group.target [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs" ] ; fhir:ConceptMap.group.element [ fhir:index 0 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.ebv_igm_anti_ea" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "ebv-ea-igm" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "EBV early antigen IgM Ab [Presence] in Serum" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologySerology.code. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader." ] ] ], [ fhir:index 1 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.bkv_fish_kidney_biopsy" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "bkv-dna-ish-tissue" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "BK virus DNA [Presence] in Tissue by in situ hybridization" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyNucleicAcid.code. LOINC has no in-situ hybridisation code for BK virus in tissue." ] ] ], [ fhir:index 2 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.ebv_hepatitis_liver" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "ebv-hepatitis-liver" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "EBV Hepatitis on liver" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); false → the same Condition with verificationStatus #refuted; blank → no Condition." ] ] ], [ fhir:index 3 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.evidence_bkvan" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.code [ fhir:value "evidence-bkvan" ] ; fhir:ConceptMap.group.element.target.display [ fhir:value "Histological evidence of BKVAN" ] ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "equivalent" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); No → the same Condition with verificationStatus #refuted; Unknown or blank → no Condition." ] ] ] ], [ fhir:index 2 ; fhir:ConceptMap.group.source [ fhir:value "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs" ] ; fhir:ConceptMap.group.element [ fhir:index 0 ; fhir:ConceptMap.group.element.code [ fhir:value "microbiology.other_positivity" ] ; fhir:ConceptMap.group.element.target [ fhir:index 0 ; fhir:ConceptMap.group.element.target.equivalence [ fhir:value "unmatched" ] ; fhir:ConceptMap.group.element.target.comment [ fhir:value "MicrobiologyReport.conclusion. DiagnosticReport.conclusion (free text, no code)" ] ] ] ] . # - ontology header ------------------------------------------------------------ <http://hl7.org/fhir/ConceptMap/dm-microbiology-to-fhir.ttl> a owl:Ontology ; owl:imports fhir:fhir.ttl ; owl:versionIRI <http://build.fhir.org/ConceptMap/dm-microbiology-to-fhir.ttl> .
IG © 2025 Protect Child. Package hl7.eu.fhir.protect-child#0.1.0-ci-build based on FHIR 4.0.1. Generated 2026-09-28
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